View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8810A_low_91 (Length: 328)
Name: NF8810A_low_91
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_91 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 5826983 - 5827291
Alignment:
| Q |
1 |
gaatatcaaaactttcaaactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgtgccaacatagct |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5826983 |
gaatatcaaaactttcaaactaagctggttgagacaacaaatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgtgccaacatagct |
5827082 |
T |
|
| Q |
101 |
tatggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataagctctcttccaggtggttacaata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5827083 |
tatggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaacttcataagctctcttccaggtggttacaata |
5827182 |
T |
|
| Q |
201 |
catcggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaatacttttacttga |
300 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5827183 |
cttcggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaatacttttacttga |
5827282 |
T |
|
| Q |
301 |
tgaggcaac |
309 |
Q |
| |
|
||||||||| |
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|
| T |
5827283 |
tgaggcaac |
5827291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 3 - 306
Target Start/End: Original strand, 5768532 - 5768835
Alignment:
| Q |
3 |
atatcaaaactttcaaactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgtgccaacatagctta |
102 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5768532 |
atataaaaactttcagactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgtgccaacatagctta |
5768631 |
T |
|
| Q |
103 |
tggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataagctctcttccaggtggttacaataca |
202 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||| |||||| | || |
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|
| T |
5768632 |
tggcaaagaaggaggtgctatggaggatgagataattgcagcagctaaagcagccaatgcacacaatttcataagctctcttccaaatggttatgacacc |
5768731 |
T |
|
| Q |
203 |
tcggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaatacttttacttgatg |
302 |
Q |
| |
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|| || || ||||||||||||||| ||||||| ||||| || || ||||| || ||||||||||| || |||||||||| | ||||||||| ||||| | |
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| T |
5768732 |
tctgtcggggaaagaggcacacagctatcaggaggacagaagcagcgtattgctattgcaagagccatgctgaaaaaccccaaaatacttttgcttgacg |
5768831 |
T |
|
| Q |
303 |
aggc |
306 |
Q |
| |
|
|||| |
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|
| T |
5768832 |
aggc |
5768835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 6 - 306
Target Start/End: Complemental strand, 5829913 - 5829613
Alignment:
| Q |
6 |
tcaaaactttcaaactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgtgccaacatagcttatgg |
105 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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|
| T |
5829913 |
tcaaaactttcagattaagctggttgagacaacaaatggggttggttggtcaagagcctattcttttcaacgaaagcattcgtgctaacataggttatgg |
5829814 |
T |
|
| Q |
106 |
caaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataagctctcttccaggtggttacaatacatcg |
205 |
Q |
| |
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|||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||||| ||| ||||| |||||||| ||| || | || || |
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|
| T |
5829813 |
aaaagaagggggtgctacagaggatgagatcattgcagcagctaacgcagcaaatgcacacagcttcataagtaatcttccagatggatatgacacgtct |
5829714 |
T |
|
| Q |
206 |
gtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaatacttttacttgatgagg |
305 |
Q |
| |
|
|| || ||||||||||| || | || || ||||| || || || || || ||||||||| | || | |||||||| | ||||||||| |||||||||| |
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| T |
5829713 |
gttggagaaagaggcacgcaactgtccggaggacagaagcagcgcattgctattgcaagaaccatgctaaaaaaccccaaaatacttttgcttgatgagg |
5829614 |
T |
|
| Q |
306 |
c |
306 |
Q |
| |
|
| |
|
|
| T |
5829613 |
c |
5829613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 211 - 309
Target Start/End: Original strand, 5794793 - 5794883
Alignment:
| Q |
211 |
cgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaatacttttacttgatgaggcaac |
309 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5794793 |
cgaaagaggcacacagttaccaggtggacaaaaacaatgt--------tgcaagagctatattgaaagaccctagaatacttttacttgatgaggcaac |
5794883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 3 - 309
Target Start/End: Complemental strand, 29327430 - 29327124
Alignment:
| Q |
3 |
atatcaaaactttcaaactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgtgccaacatagctta |
102 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
29327430 |
atatcaaaactttcagaataagctggttgagacaacaaatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgcgccaacatagctta |
29327331 |
T |
|
| Q |
103 |
tggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataagctctcttccaggtggttacaataca |
202 |
Q |
| |
|
||| ||||||| |||||||||||||||||||| || |||||||| ||||||||||||||||||||||| ||||| |||||||| | |||||| | || |
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|
| T |
29327330 |
tggtaaagaagatggtgctacggaggatgagatcatagcagcagcgaacgcagccaatgcacacaacttcataagttctcttcctgatggttatgacact |
29327231 |
T |
|
| Q |
203 |
tcggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaatacttttacttgatg |
302 |
Q |
| |
|
|| || ||||||||||||||||| |||| || ||||| || || || || || ||||||||||| || |||||||||||| ||||||||| ||||||| |
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|
| T |
29327230 |
tctgttggcgaaagaggcacacaactatctggaggacagaagcagcgcattgcgattgcaagagccatgctgaaaaaccctaaaatacttttgcttgatg |
29327131 |
T |
|
| Q |
303 |
aggcaac |
309 |
Q |
| |
|
||||||| |
|
|
| T |
29327130 |
aggcaac |
29327124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 279
Target Start/End: Complemental strand, 3431268 - 3431216
Alignment:
| Q |
227 |
ttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaa |
279 |
Q |
| |
|
||||| ||||||||||| ||| | || ||||||||||||||||| |||||||| |
|
|
| T |
3431268 |
ttatctggtggacaaaagcaaaggattgcaattgcaagagctatgttgaaaaa |
3431216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 261
Target Start/End: Complemental strand, 17872447 - 17872391
Alignment:
| Q |
205 |
ggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgc |
261 |
Q |
| |
|
|||||| |||||||| | || ||||||||||||||||||||| | ||||||||||| |
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|
| T |
17872447 |
ggtaggagaaagagggattcaattatcaggtggacaaaaacaaagaatagcaattgc |
17872391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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