View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8810A_low_95 (Length: 323)

Name: NF8810A_low_95
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8810A_low_95
NF8810A_low_95
[»] chr7 (1 HSPs)
chr7 (10-300)||(49124883-49125173)


Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 10 - 300
Target Start/End: Complemental strand, 49125173 - 49124883
Alignment:
Q  10 atgatatgttctctcgttcatttttattaatcatattctactagagaatatcactaactttaccgattgtgattacgaattatacacaacgcatacattt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49125173 atgatatgttctctcgttcatttttattaatcatattctactagagaatatcactaactttaccgattgtgattacgaattatacacaacgcatacattt 49125074  T
Q  110 gcaaactttgtatcaaggaatactcaatgtcattgttataacacaaagtgagaaccatattcaaaaattggagtaaatcaacccaaattcaactggcttt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49125073 gcaaactttgtatcaaggaatactcaatgtcattgttataacacaaagtgagaaccatattcaaaaattggagtaaatcaacccaaattcaactggcttt 49124974  T
Q  210 ttgtttaagtagtcagtggtaggatatagttagaataaacagcactaatatgattaggggtgtaacggttccgtttgaaccggtttttgat 300  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49124973 ttgtctaagtagtcagtggtaggatatagttagaataaacagcactaatatgattaggggtgtaacggttccgtttgaaccggtttttgat 49124883  T

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