View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810_low_1 (Length: 649)
Name: NF8810_low_1
Description: NF8810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 328 - 630
Target Start/End: Original strand, 52471832 - 52472134
Alignment:
| Q |
328 |
tggaccgtaaatgcaaaagagtcttctaatggttaccttttggtatcccataaattaaacaacgttgacagccaaggatctgtgttagaaatgaaggttc |
427 |
Q |
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| T |
52471832 |
tggaccgtaaatgcaaaagagtcttctaaaggttaccttttggtatcccataaattaaacaatgttgaaagccaaggatctgtgttagaaatgaaggaga |
52471931 |
T |
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| Q |
428 |
aggatatggtccaagtgttggattgaggcccttggaagcccaacattgggagagaatataggctgagtgtggtggtacagtgagacgtgttttgtgatct |
527 |
Q |
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| T |
52471932 |
acacaatggtccaagtgttggattgaggcccttggaagcccaacattgggagagaatataggctgagtgtggtggtacagtgagacgtgttttgtgatct |
52472031 |
T |
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| Q |
528 |
cttttaacaccgtatagtaactgtcatgtctgcttgctgctgtttagacagaaactcacccttcttttgttagccaatttaaaaccccatccttcttagt |
627 |
Q |
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| T |
52472032 |
cttttaacaccgtatagtaactgtcatgtctgcttgctgctgtttagacagaaactcacccttcttttgttagccaatttaaaaccccatccttcttagt |
52472131 |
T |
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| Q |
628 |
aac |
630 |
Q |
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| T |
52472132 |
aac |
52472134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 231
Target Start/End: Original strand, 41485478 - 41485559
Alignment:
| Q |
149 |
attgctgaaaaagttagtaaaagtacaacagcggaaggtaattgaagccattaatcaagttctagttcatgtaagacgttatt |
231 |
Q |
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| T |
41485478 |
attgctgaaaaagttagtaaaagtaacac-gggaaaggtaattgaatccattaattaaggtttagttcatataagactttatt |
41485559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 395
Target Start/End: Complemental strand, 38794036 - 38793987
Alignment:
| Q |
346 |
gagtcttctaatggttaccttttggtatcccataaattaaacaacgttga |
395 |
Q |
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| T |
38794036 |
gagtcctctaatggttaccttttggtatcgcataaatcaatcaatgttga |
38793987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 110
Target Start/End: Original strand, 41483324 - 41483361
Alignment:
| Q |
73 |
tattttacttttgtaggccattatgcatgatgtgattg |
110 |
Q |
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| T |
41483324 |
tattttacttttgtaggccgttttgcatgatgtgattg |
41483361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 133 - 209
Target Start/End: Complemental strand, 12024582 - 12024507
Alignment:
| Q |
133 |
tgaggatttggtgatgattgctgaaaaagttagtaaaagtacaacagcggaaggtaattgaagccattaatcaagtt |
209 |
Q |
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| T |
12024582 |
tgaggatttagtgatagttggtgaaaaagttagtaaaagta-acaagaggaaggtaattgaaaccattcatcaagtt |
12024507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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