View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810_low_11 (Length: 252)
Name: NF8810_low_11
Description: NF8810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810_low_11 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 12 - 252
Target Start/End: Complemental strand, 26326001 - 26325761
Alignment:
| Q |
12 |
gatgaactacccgcttcaaagttattcattccaaatgaaacattattatttggctgaccaagttgattttgaaccattggaagagaaaatgtttcattag |
111 |
Q |
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| T |
26326001 |
gatgaactacccgcttcaaagttattcattccaaatgaaacattattatttggctgaccaagttgattttgaaccattggaagagaaaatgtttcattag |
26325902 |
T |
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| Q |
112 |
tagtaccatgttcatgttgaataccaggatgattttgttgtgacattgcatgggaaaatagatcattattaccatcctgcccttgctgaataccatagtc |
211 |
Q |
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| T |
26325901 |
tagtaccatgtccatgttgaataccaggatgattttgttgtgacattgcatgggaaaatagatcattattaccatcctgcccttgttgaataccatagtc |
26325802 |
T |
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| Q |
212 |
attttctggtgatattaaattgtaattgaatggatcataat |
252 |
Q |
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| T |
26325801 |
attttctggtgatattaaattgtaattgaatggatcataat |
26325761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 26325728 - 26325686
Alignment:
| Q |
210 |
tcattttctggtgatattaaattgtaattgaatggatcataat |
252 |
Q |
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| T |
26325728 |
tcattttcttgtgatactaaattgtaattgaatggatcataat |
26325686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 48320064 - 48320120
Alignment:
| Q |
74 |
ttgattttgaaccattggaagagaaaatgtttcattagtagtaccatgttcatgttg |
130 |
Q |
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| T |
48320064 |
ttgatcttgaaccattggaacagaaaatgtttcatttgtactaccatttccatgttg |
48320120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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