View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8810_low_2 (Length: 541)
Name: NF8810_low_2
Description: NF8810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 16 - 417
Target Start/End: Original strand, 5278405 - 5278806
Alignment:
| Q |
16 |
ttattctgcggatccgggtaacattgtggatcattttcatcagtttggcacttcttcaggttacggaaaattaagatgctcacttatgcatttgatttgg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
5278405 |
ttattctgcggatccgggtaacattgtggatcattttcatcagtttggcacttcttcaggttacggaaaattaagatgctctcttaagcatttgatttgg |
5278504 |
T |
|
| Q |
116 |
tttgcaactgtatgggagatatggaaagaaaggaatgacaggatttttcgtggtcaagaacgttctcattatcaaatgttggaggctattaaatttctct |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
5278505 |
tttgcaactgtatgggagatatggaaagaaaggaatgacagaatttttcgtggtcaagaacgttctcattatcaaatgttggaggccattaaacttctct |
5278604 |
T |
|
| Q |
216 |
cgttttggtggtttaaggctaaatttactgtatttccttattgttttcatgattggtgcaaggccccgttcctttgtgcgggcattggttgatttttgtt |
315 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5278605 |
cgttttggtggtttaaggttaaatttactgtatttccttattgttttcatgattggtgctaggccccgttcctttgtgcgggcattagttgatttttgtt |
5278704 |
T |
|
| Q |
316 |
tgctctatctgaacttgtttgtaacttttgggcggtcttcaacggtacaccttatgccgtgaagattggctgtcgtttatattatatttcattttgattt |
415 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5278705 |
tgttctatctgaacttgtttgtaacttttgggcggtcttcagtggtacaccttgtgccgtgaagattggctgtcgtttatattatatttcattttgattt |
5278804 |
T |
|
| Q |
416 |
ct |
417 |
Q |
| |
|
|| |
|
|
| T |
5278805 |
ct |
5278806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 30651111 - 30651272
Alignment:
| Q |
16 |
ttattctgcggatccgggtaacattgtggatcattttcatcagtttggcacttcttcaggttacggaaaattaagatgctcacttatgcatttgatttgg |
115 |
Q |
| |
|
|||||| || ||||| ||||||||||| ||||||||| | ||||||||| |||| || |||| ||||||| || ||||||||||||||||| |
|
|
| T |
30651111 |
ttattccgctgatcccggtaacattgtagatcatttttaccagtttggctcttcgtcgagttatggaaaatcaa--------cttatgcatttgatttga |
30651202 |
T |
|
| Q |
116 |
tttgcaactgtatgggagatatggaaagaaaggaatgacaggatttttcgtggtcaagaacgttctcatt |
185 |
Q |
| |
|
||||| ||| | |||| | ||||||||||||||||||||| |||||| | ||||||||| ||||||||| |
|
|
| T |
30651203 |
tttgctactctgtgggtgttatggaaagaaaggaatgacatgattttccacggtcaagaatgttctcatt |
30651272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 12656852 - 12656892
Alignment:
| Q |
38 |
attgtggatcattttcatcagtttggcacttcttcaggtta |
78 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
12656852 |
attgtggatcattttcatcagtttggtacttcttcatgtta |
12656892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 147
Target Start/End: Complemental strand, 8397902 - 8397857
Alignment:
| Q |
102 |
tgcatttgatttggtttgcaactgtatgggagatatggaaagaaag |
147 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| ||||||||| |||| |
|
|
| T |
8397902 |
tgcatttgatttggtttgctactgtgtgggaaatatggaaataaag |
8397857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 162
Target Start/End: Complemental strand, 44889249 - 44889197
Alignment:
| Q |
110 |
atttggtttgcaactgtatgggagatatggaaagaaaggaatgacaggatttt |
162 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||||||||| ||| |||| ||||| |
|
|
| T |
44889249 |
atttggtttgctactgtttgggaaatatggaaagaaagaaataacagaatttt |
44889197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 16 - 417
Target Start/End: Complemental strand, 20848408 - 20848007
Alignment:
| Q |
16 |
ttattctgcggatccgggtaacattgtggatcattttcatcagtttggcacttcttcaggttacggaaaattaagatgctcacttatgcatttgatttgg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
20848408 |
ttattctgcggatccgggtaacattgtggatcattttcatcagtttggcacttcttcaggttacggaaaattaagatgttctcttatgcatttgatttgg |
20848309 |
T |
|
| Q |
116 |
tttgcaactgtatgggagatatggaaagaaaggaatgacaggatttttcgtggtcaagaacgttctcattatcaaatgttggaggctattaaatttctct |
215 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
20848308 |
tttgcaactgtatgggaaatatggaaagaaaggaatgacagaatttttcgtggtcaagaacgttctcattatcaaatgttggaggccattaaacttctct |
20848209 |
T |
|
| Q |
216 |
cgttttggtggtttaaggctaaatttactgtatttccttattgttttcatgattggtgcaaggccccgttcctttgtgcgggcattggttgatttttgtt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
20848208 |
cgttttggtggtttaaggctaaatttactgtatttccttattgttttcatgattggtgtcaggccccgttcctttgtgcgggcattagttgatttttgtt |
20848109 |
T |
|
| Q |
316 |
tgctctatctgaacttgtttgtaacttttgggcggtcttcaacggtacaccttatgccgtgaagattggctgtcgtttatattatatttcattttgattt |
415 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
20848108 |
tgttctatctgaacttgtttgtaacttttgggcggtcttcaatggtacaccttgtgccgtgaagattggttgtcgtttatattatatttcattttgattt |
20848009 |
T |
|
| Q |
416 |
ct |
417 |
Q |
| |
|
|| |
|
|
| T |
20848008 |
ct |
20848007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 117 - 418
Target Start/End: Complemental strand, 1118592 - 1118291
Alignment:
| Q |
117 |
ttgcaactgtatgggagatatggaaagaaaggaatgacaggatttttcgtggtcaagaacgttctcattatcaaatgttggaggctattaaatttctctc |
216 |
Q |
| |
|
||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
1118592 |
ttgcaacggtatgggagttatggaaagaaatgaatgacaggatttttcgtggtcaagaacgttctcattatcaaatgttggaggctattaaactttcctc |
1118493 |
T |
|
| Q |
217 |
gttttggtggtttaaggctaaatttactgtatttccttattgttttcatgattggtgcaaggccccgttcctttgtgcgggcattggttgatttttgttt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1118492 |
tttttggtggtttaaggctaaatttactgtatttccttattgttttcatgattggtgtcagaccccgttcctttgtgcgggcattggttgatttttgatt |
1118393 |
T |
|
| Q |
317 |
gctctatctgaacttgtttgtaacttttgggcggtcttcaacggtacaccttatgccgtgaagattggctgtcgtttatattatatttcattttgatttc |
416 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1118392 |
gctctgtttgaacttgtttgtaacttttgggcggtcttcaatggtacaccttgtgccgtgaagattggctgtcgtttatattatatttcattttgatttc |
1118293 |
T |
|
| Q |
417 |
tt |
418 |
Q |
| |
|
|| |
|
|
| T |
1118292 |
tt |
1118291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 35503837 - 35503900
Alignment:
| Q |
99 |
ttatgcatttgatttggtttgcaactgtatgggagatatggaaagaaaggaatgacaggatttt |
162 |
Q |
| |
|
|||||||||| ||||||||||| ||||| ||||| |||||||||||||| ||| |||||||||| |
|
|
| T |
35503837 |
ttatgcatttaatttggtttgctactgtttgggaaatatggaaagaaagaaataacaggatttt |
35503900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 38 - 120
Target Start/End: Complemental strand, 7516536 - 7516454
Alignment:
| Q |
38 |
attgtggatcattttcatcagtttggcacttcttcaggttacggaaaattaagatgctcacttatgcatttgatttggtttgc |
120 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||| || ||||||| |||| || ||||||||| ||||||||||||| |
|
|
| T |
7516536 |
attgtggatcatttctatcagtttggtacttcttcaggctatggaaaatctcgatgttcgcttatgcatctgatttggtttgc |
7516454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 159
Target Start/End: Original strand, 31050585 - 31050642
Alignment:
| Q |
102 |
tgcatttgatttggtttgcaactgtatgggagatatggaaagaaaggaatgacaggat |
159 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| | ||||||||||| ||| ||||||| |
|
|
| T |
31050585 |
tgcatttgatttggtttgctactgtgtgggaaacctggaaagaaagaaataacaggat |
31050642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 44665658 - 44665577
Alignment:
| Q |
41 |
gtggatcattttcatcagtttggcacttcttcaggttacggaaaattaagatgctcacttatgcatttgatttggtttgcaa |
122 |
Q |
| |
|
||||||||||||| ||||||||| ||||| || ||| | |||| |||||||||| ||||||||| ||||||||||||| |
|
|
| T |
44665658 |
gtggatcattttcttcagtttggtacttcctcgggtcttgctaaatcaagatgctcatctatgcatttaatttggtttgcaa |
44665577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 202 - 274
Target Start/End: Complemental strand, 30406230 - 30406158
Alignment:
| Q |
202 |
tattaaatttctctcgttttggtggtttaaggctaaatttactgtatttccttattgttttcatgattggtgc |
274 |
Q |
| |
|
|||||||||||| || |||| ||||||||| ||||||||| ||| |||| |||| ||||||||||||||| |
|
|
| T |
30406230 |
tattaaatttctttccttttagtggtttaaagctaaatttgttgtttttcattataagtttcatgattggtgc |
30406158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 16 - 417
Target Start/End: Complemental strand, 26678709 - 26678308
Alignment:
| Q |
16 |
ttattctgcggatccgggtaacattgtggatcattttcatcagtttggcacttcttcaggttacggaaaattaagatgctcacttatgcatttgatttgg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
26678709 |
ttattctgcggatccgggtaacattgtggatcattttcatcagtttggcacttcttcaggttacggaaaattaagatgctctcttatacatttgatttgg |
26678610 |
T |
|
| Q |
116 |
tttgcaactgtatgggagatatggaaagaaaggaatgacaggatttttcgtggtcaagaacgttctcattatcaaatgttggaggctattaaatttctct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
26678609 |
tttgcaactgtatgggagatatggaaagaaaggaatgatagaacttttcgtggtcaagaacgttctcattatcaaatgttggaggccattaaacttctct |
26678510 |
T |
|
| Q |
216 |
cgttttggtggtttaaggctaaatttactgtatttccttattgttttcatgattggtgcaaggccccgttcctttgtgcgggcattggttgatttttgtt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26678509 |
cgttttggtggtttaaggctaaatttactgtatttccttattgttttcatgattggtgccaggccccgttcctttgtgcgggcattagttgatttttgtt |
26678410 |
T |
|
| Q |
316 |
tgctctatctgaacttgtttgtaacttttgggcggtcttcaacggtacaccttatgccgtgaagattggctgtcgtttatattatatttcattttgattt |
415 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26678409 |
tgttctatctgaacttgtttgtaacttttgggcggtcttcaatggtacaccttgtgccgtgaagattggctgtcgtttttattatatttcattttgattt |
26678310 |
T |
|
| Q |
416 |
ct |
417 |
Q |
| |
|
|| |
|
|
| T |
26678309 |
ct |
26678308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 16 - 418
Target Start/End: Original strand, 10290314 - 10290716
Alignment:
| Q |
16 |
ttattctgcggatccgggtaacattgtggatcattttcatcagtttggcacttcttcaggttacggaaaattaagatgctcacttatgcatttgatttgg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10290314 |
ttattctgcggatccgggtaacattgtggatcattttcatcaatttggcacttcttcaggttacggaaaatcaagatgctcacttatgcatttgatttgg |
10290413 |
T |
|
| Q |
116 |
tttgcaactgtatgggagatatggaaagaaaggaatgacaggatttttcgtggtcaagaacgttctcattatcaaatgttggaggctattaaatttctct |
215 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
10290414 |
tttgcaactgtatgggagttatggaaagaaaggaatgacatgatttttcatggtcaagaacgttctcattatcaaatgttggagactattaaacttctct |
10290513 |
T |
|
| Q |
216 |
cgttttggtggtttaaggctaaatttactgtatttccttattgttttcatgattggtgcaaggccccgttcctttgtgcgggcattggttgatttttgtt |
315 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
10290514 |
ctttttggtggtttaaggctaaatttactgtatttccttattgtttttatgattggtgccagaccctgttcctttgtgcgggcattggttgatttttgat |
10290613 |
T |
|
| Q |
316 |
tgctctatctgaacttgtttgtaacttttgggcggtcttcaacggtacaccttatgccgtgaagattggctgtcgtttatattatatttcattttgattt |
415 |
Q |
| |
|
|||||| | ||||||||||||||| ||||| ||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10290614 |
tgctctgtttgaacttgtttgtaatttttgagcggtcttcaatggtacaccttgtgccgtgaagattggttgtcgtttatattatatttcattttgattt |
10290713 |
T |
|
| Q |
416 |
ctt |
418 |
Q |
| |
|
||| |
|
|
| T |
10290714 |
ctt |
10290716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 156
Target Start/End: Original strand, 32991767 - 32991888
Alignment:
| Q |
35 |
aacattgtggatcattttcatcagtttggcacttcttcaggttacggaaaattaagatgctcacttatgcatttgatttggtttgcaactgtatgggaga |
134 |
Q |
| |
|
|||||||| |||||||||||||||||||| | || ||||||| || |||| | ||||||| || ||||||||||||||||||| | ||||| || |
|
|
| T |
32991767 |
aacattgttgatcattttcatcagtttggttcatcatcaggttttggcaaatcacgatgctctctattgcatttgatttggtttgcttcctcatgggtga |
32991866 |
T |
|
| Q |
135 |
tatggaaagaaaggaatgacag |
156 |
Q |
| |
|
||||||| ||||| |||||||| |
|
|
| T |
32991867 |
tatggaaggaaagaaatgacag |
32991888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 16 - 417
Target Start/End: Complemental strand, 6017963 - 6017562
Alignment:
| Q |
16 |
ttattctgcggatccgggtaacattgtggatcattttcatcagtttggcacttcttcaggttacggaaaattaagatgctcacttatgcatttgatttgg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6017963 |
ttattctgcggatccgggtaacattgtggatcatttttatcagtttggcacttcttcaggttacggaaaattaagatgctctcttatgcatttgatttgg |
6017864 |
T |
|
| Q |
116 |
tttgcaactgtatgggagatatggaaagaaaggaatgacaggatttttcgtggtcaagaacgttctcattatcaaatgttggaggctattaaatttctct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
6017863 |
tttgcaactgtatgggagatatggaaagaaaggaatgacaggatttttcgcgatcaagaacgttctcattatcaaatgttggaggccattaaacttctct |
6017764 |
T |
|
| Q |
216 |
cgttttggtggtttaaggctaaatttactgtatttccttattgttttcatgattggtgcaaggccccgttcctttgtgcgggcattggttgatttttgtt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
6017763 |
cgttttggtggtttaaggctaaatttactgtatttccttattgttttcatgattggtgtcaggccccgttcctttgtgtgggcattagttgatttttgtt |
6017664 |
T |
|
| Q |
316 |
tgctctatctgaacttgtttgtaacttttgggcggtcttcaacggtacaccttatgccgtgaagattggctgtcgtttatattatatttcattttgattt |
415 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6017663 |
tgttctatctgaacttgtttgtaacttttgggcggtcttcaatggtacaccttgtgccgtgaagattgcctgtcgtttatattatatttcattttgattt |
6017564 |
T |
|
| Q |
416 |
ct |
417 |
Q |
| |
|
|| |
|
|
| T |
6017563 |
ct |
6017562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 16 - 417
Target Start/End: Original strand, 5696600 - 5697001
Alignment:
| Q |
16 |
ttattctgcggatccgggtaacattgtggatcattttcatcagtttggcacttcttcaggttacggaaaattaagatgctcacttatgcatttgatttgg |
115 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
5696600 |
ttattatgcggatccgggtaacattgtggatcattttcatcagtttggcacttcttcaggttacggaaaattaagatgctctcttatgcatttgatttag |
5696699 |
T |
|
| Q |
116 |
tttgcaactgtatgggagatatggaaagaaaggaatgacaggatttttcgtggtcaagaacgttctcattatcaaatgttggaggctattaaatttctct |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
5696700 |
cttgcaactgtatgggagatatggaaagaaaggaatgacaggatttttcgtggtcaagaacgttctcattatcaaatgttggaggccattaaacttctct |
5696799 |
T |
|
| Q |
216 |
cgttttggtggtttaaggctaaatttactgtatttccttattgttttcatgattggtgcaaggccccgttcctttgtgcgggcattggttgatttttgtt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5696800 |
cgttttggtggtttaaggctaaatttactgtatttccttattgttttcatgattggtgtcaggccccgttcctttgtgcgggcattagttgatttttgtt |
5696899 |
T |
|
| Q |
316 |
tgctctatctgaacttgtttgtaacttttgggcggtcttcaacggtacaccttatgccgtgaagattggctgtcgtttatattatatttcattttgattt |
415 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| ||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5696900 |
tgtcctatctgaacttgtttgtaacttttgggcagtcttgaatggtacaccttgtgccgtgaagattggctgtcgtttatattatatttcattttgattt |
5696999 |
T |
|
| Q |
416 |
ct |
417 |
Q |
| |
|
|| |
|
|
| T |
5697000 |
ct |
5697001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 16 - 399
Target Start/End: Original strand, 25036448 - 25036831
Alignment:
| Q |
16 |
ttattctgcggatccgggtaacattgtggatcattttcatcagtttggcacttcttcaggttacggaaaattaagatgctcacttatgcatttgatttgg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25036448 |
ttattctgcggatccgggtaacattgtggatcattttcatcagtttggcacttcttcaggttacggaaaattaagatgctcacttatgcatttgatttgg |
25036547 |
T |
|
| Q |
116 |
tttgcaactgtatgggagatatggaaagaaaggaatgacaggatttttcgtggtcaagaacgttctcattatcaaatgttggaggctattaaatttctct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
25036548 |
tttgcaactgtatgggagatatggaaagaaaggaatgacaggatttttcgtggtcaagaacgttctcattatcaaatgttggagactattaaacttctct |
25036647 |
T |
|
| Q |
216 |
cgttttggtggtttaaggctaaatttactgtatttccttattgttttcatgattggtgcaaggccccgttcctttgtgcgggcattggttgatttttgtt |
315 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25036648 |
ctttttggtggtttaaggctaaatttactgtatttccttattgttttcatgattggtgtcaggccccgttcctttgtgcgggcattggttgatttttgtt |
25036747 |
T |
|
| Q |
316 |
tgctctatctgaacttgtttgtaacttttgggcggtcttcaacggtacaccttatgccgtgaagattggctgtcgtttatatta |
399 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||| | |||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
25036748 |
tgctctatctgaacttgtttataacttttggacggtcttcaatgatacaccttgtgccgtgaagattgactgtcgtttatatta |
25036831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 16 - 418
Target Start/End: Original strand, 8643655 - 8644055
Alignment:
| Q |
16 |
ttattctgcggatccgggtaacattgtggatcattttcatcagtttggcacttcttcaggttacggaaaattaagatgctcacttatgcatttgatttgg |
115 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
8643655 |
ttattctgcggattcgggtaacattgtggatcattttcatcagtttggcacttgttcaggttacggaaaatcaagatgctcacttattcatttgatttgg |
8643754 |
T |
|
| Q |
116 |
tttgcaactgtatgggagatatggaaagaaaggaatgacaggatttttcgtggtcaagaacgttctcattatcaaatgttggaggctattaaatttctct |
215 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
8643755 |
tttgcaactgt--gggagttatgggaagaaaggaatgacaggatttttcgtggtaaaaaacgttctcattatcaaatgttggagggtattaaacttctct |
8643852 |
T |
|
| Q |
216 |
cgttttggtggtttaaggctaaatttactgtatttccttattgttttcatgattggtgcaaggccccgttcctttgtgcgggcattggttgatttttgtt |
315 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| || |||| ||||||||||| |||||||||||||||||| | |
|
|
| T |
8643853 |
ctttttggtggtttaaggctaaattgactgtatttccttattattttcatgattggtgccagacccctttcctttgtgcaggcattggttgatttttgat |
8643952 |
T |
|
| Q |
316 |
tgctctatctgaacttgtttgtaacttttgggcggtcttcaacggtacaccttatgccgtgaagattggctgtcgtttatattatatttcattttgattt |
415 |
Q |
| |
|
|||||| | ||||| |||||||||||||| |||||||||| |||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8643953 |
tgctctgtttgaacagatttgtaacttttggacggtcttcaatggtacaccttgtgctgtgaagattggctgtcgtttataatatatttcattttgattt |
8644052 |
T |
|
| Q |
416 |
ctt |
418 |
Q |
| |
|
||| |
|
|
| T |
8644053 |
ctt |
8644055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 14362094 - 14362058
Alignment:
| Q |
42 |
tggatcattttcatcagtttggcacttcttcaggtta |
78 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |
|
|
| T |
14362094 |
tggatcattttcatcagtttggtacttcttcaggtta |
14362058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 70 - 418
Target Start/End: Complemental strand, 31759548 - 31759200
Alignment:
| Q |
70 |
ttcaggttacggaaaattaagatgctcacttatgcatttgatttggtttgcaactgtatgggagatatggaaagaaaggaatgacaggatttttcgtggt |
169 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31759548 |
ttcaggttacggaaaatcaagatgctcacttatgtatttgatttggtttgcacctgtgtgggaattatggaaagaaaggaatgacaggatttttcgtggt |
31759449 |
T |
|
| Q |
170 |
caagaacgttctcattatcaaatgttggaggctattaaatttctctcgttttggtggtttaaggctaaatttactgtatttccttattgttttcatgatt |
269 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31759448 |
caagaacgttgtcattttcaaatgttggaggctattaaacttctctctttttggtggtttaaggctaaatttactgtatttccttattgttttcatgatt |
31759349 |
T |
|
| Q |
270 |
ggtgcaaggccccgttcctttgtgcgggcattggttgatttttgtttgctctatctgaacttgtttgtaacttttgggcggtcttcaacggtacacctta |
369 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| ||||| | | ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31759348 |
ggtgccaggccccgttcctttgtgcgggcattggttgatttttgattgctttgtttgaacttgtttgtaacttttgggcggtcttcaatggtacacctta |
31759249 |
T |
|
| Q |
370 |
tgccgtgaagattggctgtcgtttatattatatttcattttgatttctt |
418 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31759248 |
tgccgtgaagattggttgtcgtttatattatatttcattttgatttctt |
31759200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 31124176 - 31124236
Alignment:
| Q |
102 |
tgcatttgatttggtttgcaactgtatgggagatatggaaagaaaggaatgacaggatttt |
162 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| || ||||||||||| ||| |||||||||| |
|
|
| T |
31124176 |
tgcatttgatttggtttgctactgtgtgggaaatctggaaagaaagaaataacaggatttt |
31124236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 23409569 - 23409612
Alignment:
| Q |
37 |
cattgtggatcattttcatcagtttggcacttcttcaggttacg |
80 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
23409569 |
cattgtggatcattttcatcagtttggtacctcttcaggttacg |
23409612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 6612295 - 6612347
Alignment:
| Q |
110 |
atttggtttgcaactgtatgggagatatggaaagaaaggaatgacaggatttt |
162 |
Q |
| |
|
||||||||||| ||||| || || |||||||||||||| ||| |||||||||| |
|
|
| T |
6612295 |
atttggtttgctactgtgtgagaaatatggaaagaaagaaataacaggatttt |
6612347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 171; Significance: 1e-91; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 155 - 418
Target Start/End: Complemental strand, 36439065 - 36438818
Alignment:
| Q |
155 |
aggatttttcgtggtcaagaacgttctcattatcaaatgttggaggctattaaatttctctcgttttggtggtttaaggctaaatttactgtatttcctt |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36439065 |
aggatttttcgtggtcaagaacgttctcattatcaaatgttggaggctattaaacttctctctttttggtggtttaaggctaaatttactgtatttcctt |
36438966 |
T |
|
| Q |
255 |
attgttttcatgattggtgcaaggccccgttcctttgtgcgggcattggttgatttttgtttgctctatctgaacttgtttgtaacttttgggcggtctt |
354 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||| ||| | |||||||||||||||||||||||||||||| |
|
|
| T |
36438965 |
attgttttcatgattgg----------------tttgtgcgggcattggttgatttttgattgttctctttgaacttgtttgtaacttttgggcggtctt |
36438882 |
T |
|
| Q |
355 |
caacggtacaccttatgccgtgaagattggctgtcgtttatattatatttcattttgatttctt |
418 |
Q |
| |
|
||| |||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36438881 |
caatggtacaccttgtgtcgtgaagattgactgtcgtttatattatatttcattttgatttctt |
36438818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 34 - 381
Target Start/End: Original strand, 34792960 - 34793297
Alignment:
| Q |
34 |
taacattgtggatcattttcatcagtttggcacttcttcaggttacggaaaattaagatgctcacttatgcatttgatttggtttgcaactgtatgggag |
133 |
Q |
| |
|
||||||| | ||||||||| | ||||||||| |||| || ||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
34792960 |
taacattatagatcatttttaccagtttggctcttcatcgggttatggaaaatcaagatgctcacttatgcatttgatttggtttgctactgtatgggtg |
34793059 |
T |
|
| Q |
134 |
atatggaaagaaaggaatgacaggatttttcgtggtcaagaacgttctcattatcaaatgttggaggctattaaatttctctcgttttggtggtttaagg |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||| | || || |||||||||||||| | |
|
|
| T |
34793060 |
ttatggaaagaaaggaatgacaggatttttcg----------cgttctcattatcaacttgtggaggctattaaactgctatccttttggtggtttaaag |
34793149 |
T |
|
| Q |
234 |
ctaaatttactgtatttccttattgttttcatgattggtgcaaggccccgttcctttgtgcgggcattggttgatttttgtttgctctatctgaacttgt |
333 |
Q |
| |
|
|||||||| |||||||| ||||||||||||| |||| ||| | ||||| || ||||||||||||||||| ||||||||||| ||| |||||||| | | |
|
|
| T |
34793150 |
ctaaattttatgtatttcgttattgttttcataattgatgccaagccccttttctttgtgcgggcattggctgatttttgttagctacatctgaacatat |
34793249 |
T |
|
| Q |
334 |
t-tgtaacttttgggcggtcttcaacggtacaccttatgccgtgaagat |
381 |
Q |
| |
|
| ||| | || | ||| |||||||| |||||||||| |||||| ||||| |
|
|
| T |
34793250 |
tatgt-atttcttggctgtcttcaaaggtacaccttgtgccgtaaagat |
34793297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 430 - 525
Target Start/End: Original strand, 49125189 - 49125284
Alignment:
| Q |
430 |
gctaataagtactaaaatggcgtcaagctttattattaattaatttgctttaagaaaaagtaaaagaggtaacaaacagtgaaatttggacaaaac |
525 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49125189 |
gctaataagtactaaaatggcgtcaagctttattattaattaatttactttaagaaaaagtaaaagaggtaacaaacagtgaaatttggacaaaac |
49125284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 361 - 418
Target Start/End: Complemental strand, 40076819 - 40076762
Alignment:
| Q |
361 |
tacaccttatgccgtgaagattggctgtcgtttatattatatttcattttgatttctt |
418 |
Q |
| |
|
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
40076819 |
tacacattgtgccgtgaagattgattgtcgtttatattatatttcattttgatttctt |
40076762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 37237983 - 37237931
Alignment:
| Q |
104 |
catttgatttggtttgcaactgtatgggagatatggaaagaaaggaatgacag |
156 |
Q |
| |
|
||||||||||||||||| ||||| ||||| ||||| |||||||| ||| |||| |
|
|
| T |
37237983 |
catttgatttggtttgctactgtgtgggaaatatgtaaagaaagaaataacag |
37237931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 3e-77; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 16 - 418
Target Start/End: Original strand, 4372714 - 4373116
Alignment:
| Q |
16 |
ttattctgcggatccgggtaacattgtggatcattttcatcagtttggcacttcttcaggttacggaaaattaagatgctcacttatgcatttgatttgg |
115 |
Q |
| |
|
|||||| |||||||| ||||||||||| ||||||||| ||||||||| ||||||||||||| | ||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
4372714 |
ttattccgcggatcccggtaacattgtagatcatttttatcagtttgacacttcttcaggtaatggaaaatcaagatgctcaattatgcatttgatttgg |
4372813 |
T |
|
| Q |
116 |
tttgcaactgtatgggagatatggaaagaaaggaatgacaggatttttcgtggtcaagaacgttctcattatcaaatgttggaggctattaaatttctct |
215 |
Q |
| |
|
||||||| ||| |||| | ||||||| |||| |||||||| |||||| | | |||||||| |||| || |||| | |||||||||||||| ||| | |
|
|
| T |
4372814 |
tttgcaagtgtgtgggtgttatggaaggaaatgaatgacatgattttctgcgaacaagaacggtctccttctcaatttttggaggctattaagcttcaca |
4372913 |
T |
|
| Q |
216 |
cgttttggtggtttaaggctaaatttactgtatttccttattgttttcatgattggtgcaaggccccgttcctttgtgcgggcattggttgatttttgtt |
315 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | ||| |||| |||||||| |||||||| ||||||||||| |
|
|
| T |
4372914 |
cattttggtggtttagagctaaatttactgtatttccttattgttttcattattggtgccaagcctcgtttctttgtgcaggcattggctgatttttgtt |
4373013 |
T |
|
| Q |
316 |
tgctctatctgaacttgtttgtaacttttgggcggtcttcaacggtacaccttatgccgtgaagattggctgtcgtttatattatatttcattttgattt |
415 |
Q |
| |
|
|||| ||| |||| | | |||| || ||||||| ||| ||||||| |||||| ||||| || ||||||| || |||||||||||||||||| |
|
|
| T |
4373014 |
tgctacatcagaacagatacaatattttttggttgtcttcagcggcacaccttgtgccgtaaagataggttgtcgttcgtaatatatttcattttgattt |
4373113 |
T |
|
| Q |
416 |
ctt |
418 |
Q |
| |
|
||| |
|
|
| T |
4373114 |
ctt |
4373116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 201
Target Start/End: Original strand, 12715942 - 12716120
Alignment:
| Q |
23 |
gcggatccgggtaacattgtggatcattttcatcagtttggcacttcttcaggttacggaaaattaagatgctcacttatgcatttgatttggtttgcaa |
122 |
Q |
| |
|
|||||||| |||| ||||| |||||||| ||||||||| |||||||| | ||| || |||| ||||||| | ||| ||||||||||||||||||||| |
|
|
| T |
12715942 |
gcggatccttgtaatattgtcaatcatttttatcagtttgacacttctttacgttttggcaaatcaagatgccctcttttgcatttgatttggtttgcaa |
12716041 |
T |
|
| Q |
123 |
ctgtatgggagatatggaaagaaaggaatgacaggatttttcgtggtcaagaacgttctcattatcaaatgttggaggc |
201 |
Q |
| |
|
||| ||| | ||||||| |||||||| || | | | || |||||||||||||| |||| ||||| || |||||||| |
|
|
| T |
12716042 |
atgtgtggatgttatggaaggaaaggaacgaaatgttattccgtggtcaagaacgatctccctatcagattttggaggc |
12716120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 163
Target Start/End: Original strand, 5634773 - 5634826
Alignment:
| Q |
110 |
atttggtttgcaactgtatgggagatatggaaagaaaggaatgacaggattttt |
163 |
Q |
| |
|
||||||||||||||||| ||||| | ||||||||||| ||| ||||||||||| |
|
|
| T |
5634773 |
atttggtttgcaactgtgtgggaattgtggaaagaaagaaataacaggattttt |
5634826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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