View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8810_low_6 (Length: 310)
Name: NF8810_low_6
Description: NF8810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 1492899 - 1492601
Alignment:
| Q |
1 |
gcacttgacatatttccatattcacttagcacctcccgtgtggctctcatcttttcgggctttaaggctaacttttgctctacttggtctagaattgcag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1492899 |
gcacttgacatatttccatattcacttagcacctcccgtgtggctctcatcttttcgggctttaaggctaacttttgctctacttggtctaaaattgcag |
1492800 |
T |
|
| Q |
101 |
gtccaccagggtgtgcaatccaaaagattgagttgtaatcagagattcccaatggttggaaagcctcaactaatgctttatttatattttttgacacaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1492799 |
gtccaccagggtgtgcaatccaaaagattgagttgtaatcagagattcccaatggttggaaagcctcaactaatgctttatttatattttttgacacaat |
1492700 |
T |
|
| Q |
201 |
cccaggaacatctttaagaaggtgaaatgttaacccaacttcacgaagatgaccatcaatggcaccttcactatcaggagcaattgtttgtgatgtcca |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1492699 |
cccaggaacatctttaagaaggtgaaatgttaacccagcttcacgaagatgaccatcaatggcaccttcactatcaggagcaattgtttgtgctgtcca |
1492601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 1505708 - 1505417
Alignment:
| Q |
1 |
gcacttgacatatttccatattcacttagcacctcccgtgtggctctcatcttttcgggctttaaggctaacttttgctctacttggtctagaattgcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || | |||||| |||||||||| ||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
1505708 |
gcacttgacatatttccatattcactaagcacttctctagtggctttcatcttttcaggctttaaggctaacttttgctctacttgatctaaaattgcag |
1505609 |
T |
|
| Q |
101 |
gtccaccagggtgtgcaatccaaaagattgagttgtaatcagagattcccaatggttggaaagcctcaactaatgctttatttatattttttgacacaat |
200 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||| ||||| | ||| |||||||||||||| ||||| ||||||||||| || || ||||| ||||| |
|
|
| T |
1505608 |
ggccaccagggtgtgcaatccagaagattgagttgtagtcagaaactcctaatggttggaaagcatcaaccaatgctttattgatgttctttgaaacaat |
1505509 |
T |
|
| Q |
201 |
cccaggaacatctttaagaaggtgaaatgttaacccaacttcacgaagatgaccatcaatggcaccttcactatcaggagcaattgtttgtg |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||||||| ||||| |||||||| ||||| |||||||| || |||||||||| |
|
|
| T |
1505508 |
ttcaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccgtcaatggctccttcgctatcaggcgcgattgtttgtg |
1505417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 4 - 292
Target Start/End: Complemental strand, 1478727 - 1478439
Alignment:
| Q |
4 |
cttgacatatttccatattcacttagcacctcccgtgtggctctcatcttttcgggctttaaggctaacttttgctctacttggtctagaattgcaggtc |
103 |
Q |
| |
|
|||||||| || ||||||||||| || || |||| ||||| |||| ||||| || |||||| ||||||||| || ||||||||||||||||| |||| |
|
|
| T |
1478727 |
cttgacatgttaccatattcactaagtacttccctagtggccttcattttttcaggttttaagcctaacttttcttcaacttggtctagaattgcgggtc |
1478628 |
T |
|
| Q |
104 |
caccagggtgtgcaatccaaaagattgagttgtaatcagagattcccaatggttggaaagcctcaactaatgctttatttatattttttgacacaatccc |
203 |
Q |
| |
|
|||| ||||| |||||||| |||||||| || ||||||||||| ||||||||||||||||| || |||||||||| || || ||||| |||||||| |
|
|
| T |
1478627 |
cacctgggtgagcaatccagaagattgaattataatcagagatgtttaatggttggaaagcctcgaccaatgctttatcaatgttctttgaaacaatccc |
1478528 |
T |
|
| Q |
204 |
aggaacatctttaagaaggtgaaatgttaacccaacttcacgaagatgaccatcaatggcaccttcactatcaggagcaattgtttgtg |
292 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||| || ||||| || |||||||||||||||| |
|
|
| T |
1478527 |
aggaacatctttaagaaggtgaaatgttagaccagcttcacgaaggtgaccatcaatggctccctcactgtctggagcaattgtttgtg |
1478439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 1482924 - 1482633
Alignment:
| Q |
1 |
gcacttgacatatttccatattcacttagcacctcccgtgtggctctcatcttttcgggctttaaggctaacttttgctctacttggtctagaattgcag |
100 |
Q |
| |
|
||||||||||| || ||||||||||| || || || | |||||| |||||||||| || |||||| |||||||||| || ||||| || |||||||| | |
|
|
| T |
1482924 |
gcacttgacatgttaccatattcactaagtacttctctagtggctttcatcttttcaggttttaagcctaacttttgttcaacttgatcaagaattgcgg |
1482825 |
T |
|
| Q |
101 |
gtccaccagggtgtgcaatccaaaagattgagttgtaatcagagattcccaatggttggaaagcctcaactaatgctttatttatattttttgacacaat |
200 |
Q |
| |
|
||||||| || || ||||||||||||||||||||||||||||| || |||||||||||||| || | |||||||||| || || ||||| ||||| |
|
|
| T |
1482824 |
gtccacctggatgagcaatccaaaagattgagttgtaatcagaaatgtttaatggttggaaagcatcgatcaatgctttatcaatgttctttgaaacaat |
1482725 |
T |
|
| Q |
201 |
cccaggaacatctttaagaaggtgaaatgttaacccaacttcacgaagatgaccatcaatggcaccttcactatcaggagcaattgtttgtg |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||| || ||||| || |||||||||||||||| |
|
|
| T |
1482724 |
cccaggaacatctttaagaaggtgaaatgttagaccagcttcacgaagatgaccgtcaatggccccctcactgtctggagcaattgtttgtg |
1482633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 1499971 - 1499680
Alignment:
| Q |
1 |
gcacttgacatatttccatattcacttagcacctcccgtgtggctctcatcttttcgggctttaaggctaacttttgctctacttggtctagaattgcag |
100 |
Q |
| |
|
||||| |||||||| ||||||||||| ||||| |||| | | |||| |||||| | || ||| ||||||||||||| | ||| ||||||||||||| |
|
|
| T |
1499971 |
gcactagacatattaccatattcactaagcacttccctaacgaccctcaacttttcagctttcaagcctaacttttgctcaatttgatctagaattgcag |
1499872 |
T |
|
| Q |
101 |
gtccaccagggtgtgcaatccaaaagattgagttgtaatcagagattcccaatggttggaaagcctcaactaatgctttatttatattttttgacacaat |
200 |
Q |
| |
|
| ||||| || || |||||||||||||||||||| |||||||||||||| |||||||| || |||||||||| | |||||| ||||| ||||| ||||| |
|
|
| T |
1499871 |
gaccacccggatgagcaatccaaaagattgagttataatcagagattcctaatggttgaaatgcctcaactagtactttatcaatattctttgagacaat |
1499772 |
T |
|
| Q |
201 |
cccaggaacatctttaagaaggtgaaatgttaacccaacttcacgaagatgaccatcaatggcaccttcactatcaggagcaattgtttgtg |
292 |
Q |
| |
|
| ||| ||||| ||| ||| | | |||||| ||||||||||||||| |||||| ||| || ||||||||||||| |||||||||||||| |
|
|
| T |
1499771 |
ctcagagacatccttacgaatattatatgttagcccaacttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtg |
1499680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 61 - 292
Target Start/End: Complemental strand, 1509794 - 1509564
Alignment:
| Q |
61 |
tttaaggctaacttttgctctacttggtctagaattgcaggtccaccagggtgtgcaatccaaaagattgagttgtaatcagagattcccaatggttgga |
160 |
Q |
| |
|
||||||||||| |||||||| |||||||| | |||||| | |||| | ||||| ||||||||||| |||||||||||||||||||| |||||||| | |
|
|
| T |
1509794 |
tttaaggctaatttttgctcaacttggtcaataattgcggctccatctgggtgagcaatccaaaatattgagttgtaatcagagatgtttaatggttgaa |
1509695 |
T |
|
| Q |
161 |
aagcctcaactaatgctttatttatattttttgacacaatcccaggaacatctttaagaaggtgaaatgttaacccaacttcacgaagatgaccatcaat |
260 |
Q |
| |
|
| ||||||| | ||||| || || ||||| || ||| || ||| |||||||||||||| ||||||||| |||||||||||||| ||||| ||||| |
|
|
| T |
1509694 |
atgcctcaatcagtgcttaatcaatgttttt-gagacagtcacagagacatctttaagaagacgaaatgttagtccaacttcacgaaggtgaccgtcaat |
1509596 |
T |
|
| Q |
261 |
ggcaccttcactatcaggagcaattgtttgtg |
292 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |
|
|
| T |
1509595 |
ggcaccttcactatttggagcaattgtttgtg |
1509564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 1487401 - 1487154
Alignment:
| Q |
1 |
gcacttgacatatttccatattcacttagcacctcccgtgtggctctcatcttttcgggctttaaggctaacttttgctctacttggtctagaattgcag |
100 |
Q |
| |
|
||||||||||| || ||||||||||| || || |||| ||||| |||||||||| || || || ||||||||||| || || ||||| | |||||||| |
|
|
| T |
1487401 |
gcacttgacatgttaccatattcactaagtacttccctagtggccttcatcttttccggtttcaaagctaacttttgttcaacatggtccaaaattgcag |
1487302 |
T |
|
| Q |
101 |
gtccaccagggtgtgcaatccaaaagattgagttgtaatcagagattcccaatggttggaaagcctcaactaatgctttatttatattttttgacacaat |
200 |
Q |
| |
|
|||| || ||||| |||||||||| |||| |||||||||||||| || ||||||||||| |||| ||||| | |||||| || || ||||| | ||| |
|
|
| T |
1487301 |
gtccgcctgggtggacaatccaaaaaattgcattgtaatcagagatgcctaatggttggaatgccttaactagttctttatcgatgttctttgagataat |
1487202 |
T |
|
| Q |
201 |
cccaggaacatctttaagaaggtgaaatgttaacccaacttcacgaag |
248 |
Q |
| |
|
|||| ||||||||| |||| | |||||||| |||||||||||||| |
|
|
| T |
1487201 |
ttcagggacatctttacgaagattaaatgttagtccaacttcacgaag |
1487154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 139
Target Start/End: Complemental strand, 1496163 - 1496085
Alignment:
| Q |
61 |
tttaaggctaacttttgctctacttggtctagaattgcaggtccaccagggtgtgcaatccaaaagattgagttgtaat |
139 |
Q |
| |
|
|||||| ||||||| ||||| ||||| |||| |||||||||||||| || || |||||||| ||||||| |||||||| |
|
|
| T |
1496163 |
tttaagcctaacttgtgctcaacttgatctataattgcaggtccactcggatgagcaatccagaagattgggttgtaat |
1496085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 46706379 - 46706677
Alignment:
| Q |
1 |
gcacttgacatatttccatattcacttagcacctcccgtgtggctctcatcttttcgggctttaaggctaacttttgctctacttggtctagaattgcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || | ||||||||||||||||| ||||| ||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
46706379 |
gcacttgacatatttccatattcactaagcacttctctagtggctctcatcttttcaggcttcaaggctaacttttgctctacttgatctaaaattgcag |
46706478 |
T |
|
| Q |
101 |
gtccaccagggtgtgcaatccaaaagattgagttgtaatcagagattcccaatggttggaaagcctcaactaatgctttatttatattttttgacacaat |
200 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || || ||||| ||||| |
|
|
| T |
46706479 |
ggccaccagggtgtgcaatccaaaagattgagttgtaatcagaaattcccaatggttggaaagcctcaactaatgctttatcaatgttctttgaaacaat |
46706578 |
T |
|
| Q |
201 |
cccaggaacatctttaagaaggtgaaatgttaacccaacttcacgaagatgaccatcaatggcaccttcactatcaggagcaattgtttgtgatgtcca |
299 |
Q |
| |
|
||||||||||||||| |||||||| ||||||| ||| |||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
46706579 |
cccaggaacatcttttagaaggtggaatgttagtccagcttcacgaaggtgaccatcaatggctccttcactatctggagcaattgtttgtgaagtcca |
46706677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 5311128 - 5310837
Alignment:
| Q |
1 |
gcacttgacatatttccatattcacttagcacctcccgtgtggctctcatcttttcgggctttaaggctaacttttgctctacttggtctagaattgcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || | || || |||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5311128 |
gcacttgacatatttccatattcactgagcacttctctagttgcattcatcttttcaggctttaaggctaacttttgctctacttgatctagaattgcag |
5311029 |
T |
|
| Q |
101 |
gtccaccagggtgtgcaatccaaaagattgagttgtaatcagagattcccaatggttggaaagcctcaactaatgctttatttatattttttgacacaat |
200 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||| ||||||||| | || || ||||| ||||| |
|
|
| T |
5311028 |
gtccaccgggatgtgcaatccaaaagattgagttgtaatcagaaattcccaatggctcgaaagcctcaaccaatgctttagtaatgttctttgagacaat |
5310929 |
T |
|
| Q |
201 |
cccaggaacatctttaagaaggtgaaatgttaacccaacttcacgaagatgaccatcaatggcaccttcactatcaggagcaattgtttgtg |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5310928 |
cccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatggctccttcactatcaggagcaattgtttgtg |
5310837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 5315842 - 5315551
Alignment:
| Q |
1 |
gcacttgacatatttccatattcacttagcacctcccgtgtggctctcatcttttcgggctttaaggctaacttttgctctacttggtctagaattgcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || | || || |||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
5315842 |
gcacttgacatatttccatattcactgagcacttctctagttgcattcatcttttcaggctttaaggctaacttttgctccacttgatctagaattgcag |
5315743 |
T |
|
| Q |
101 |
gtccaccagggtgtgcaatccaaaagattgagttgtaatcagagattcccaatggttggaaagcctcaactaatgctttatttatattttttgacacaat |
200 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||| ||||||||| | || || ||||| ||||| |
|
|
| T |
5315742 |
gtccaccgggatgtgcaatccaaaagattgagttgtaatcagaaattcccaatggctcgaaagcctcaaccaatgctttagtaatgttctttgaaacaat |
5315643 |
T |
|
| Q |
201 |
cccaggaacatctttaagaaggtgaaatgttaacccaacttcacgaagatgaccatcaatggcaccttcactatcaggagcaattgtttgtg |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5315642 |
cccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatggctccttcactatcaggagcaattgtttgtg |
5315551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 5285039 - 5284748
Alignment:
| Q |
1 |
gcacttgacatatttccatattcacttagcacctcccgtgtggctctcatcttttcgggctttaaggctaacttttgctctacttggtctagaattgcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || | || || |||||||||| ||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5285039 |
gcacttgacatatttccatattcactgagcacttctctggttgcattcatcttttcaggcttcaaggctaacttttgctctacttgatctagaattgcag |
5284940 |
T |
|
| Q |
101 |
gtccaccagggtgtgcaatccaaaagattgagttgtaatcagagattcccaatggttggaaagcctcaactaatgctttatttatattttttgacacaat |
200 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||| ||||||||| | || || ||||| ||||| |
|
|
| T |
5284939 |
gtccaccgggatgtgcaatccaaaagattgagttgtaatcagaaattcccaatggctcaaaagcctcaaccaatgctttagtaatgttctttgaaacaat |
5284840 |
T |
|
| Q |
201 |
cccaggaacatctttaagaaggtgaaatgttaacccaacttcacgaagatgaccatcaatggcaccttcactatcaggagcaattgtttgtg |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5284839 |
cccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatggctccttcactatcaggagcaattgtttgtg |
5284748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 5289088 - 5289379
Alignment:
| Q |
1 |
gcacttgacatatttccatattcacttagcacctcccgtgtggctctcatcttttcgggctttaaggctaacttttgctctacttggtctagaattgcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || | || || |||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
5289088 |
gcacttgacatatttccatattcactgagcacttctctagttgcattcatcttttcaggctttaaggctaacttttgctccacttgatctagaattgcag |
5289187 |
T |
|
| Q |
101 |
gtccaccagggtgtgcaatccaaaagattgagttgtaatcagagattcccaatggttggaaagcctcaactaatgctttatttatattttttgacacaat |
200 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||| ||||||||| | || || ||||| ||||| |
|
|
| T |
5289188 |
gtccaccgggatgtgcaatccaaaagattgagttgtaatcagaaattcccaatggctcgaaagcctcaaccaatgctttagtgatgttctttgaaacaat |
5289287 |
T |
|
| Q |
201 |
cccaggaacatctttaagaaggtgaaatgttaacccaacttcacgaagatgaccatcaatggcaccttcactatcaggagcaattgtttgtg |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||| || ||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
5289288 |
cccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtggccatcaatggctccttcactatccggagcaattgtttgtg |
5289379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 5303227 - 5302936
Alignment:
| Q |
1 |
gcacttgacatatttccatattcacttagcacctcccgtgtggctctcatcttttcgggctttaaggctaacttttgctctacttggtctagaattgcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || | || || |||||||||| ||||| || | |||||||||||||||||| ||||||||||||| |
|
|
| T |
5303227 |
gcacttgacatatttccatattcactgagcacttctctagttgcattcatcttttcaggcttcaatgataacttttgctctacttgatctagaattgcag |
5303128 |
T |
|
| Q |
101 |
gtccaccagggtgtgcaatccaaaagattgagttgtaatcagagattcccaatggttggaaagcctcaactaatgctttatttatattttttgacacaat |
200 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||| ||||||| ||| | ||||| ||||| ||||||||| | || || ||||| ||||| |
|
|
| T |
5303127 |
gtccaccgggatgtgcaatccaaaagattgagttgtaatcagaaattcccagtggctcaaaagcgtcaaccaatgctttagtaatgttctttgaaacaat |
5303028 |
T |
|
| Q |
201 |
cccaggaacatctttaagaaggtgaaatgttaacccaacttcacgaagatgaccatcaatggcaccttcactatcaggagcaattgtttgtg |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5303027 |
cccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatggctccttcactatcaggagcaattgtttgtg |
5302936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 260
Target Start/End: Original strand, 32530582 - 32530658
Alignment:
| Q |
184 |
atattttttgacacaatcccaggaacatctttaagaaggtgaaatgttaacccaacttcacgaagatgaccatcaat |
260 |
Q |
| |
|
||||| ||||| | ||| |||||||||||||| ||||| ||||| || | |||||||||||| ||||| || ||||| |
|
|
| T |
32530582 |
atattctttgagataattccaggaacatctttgagaagatgaaaagtgagcccaacttcacggagatgtccgtcaat |
32530658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 44133510 - 44133219
Alignment:
| Q |
1 |
gcacttgacatatttccatattcacttagcacctcccgtgtggctctcatcttttcgggctttaaggctaacttttgctctacttggtctagaattgcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || | |||||| |||||||||| || |||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
44133510 |
gcacttgacatatttccatattcactaagcacttctctggtggctttcatcttttcaggttttaaggctaacttttgctcaacttgatctagaattgcag |
44133411 |
T |
|
| Q |
101 |
gtccaccagggtgtgcaatccaaaagattgagttgtaatcagagattcccaatggttggaaagcctcaactaatgctttatttatattttttgacacaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||| |||||||||||| ||||||||||| || || ||||| ||||| |
|
|
| T |
44133410 |
gtccaccagggtgtgcaatccaaaagattgaattgtaatcagaaattcctaatggttcgaaagcctcaaccaatgctttattgatgttctttgaaacaat |
44133311 |
T |
|
| Q |
201 |
cccaggaacatctttaagaaggtgaaatgttaacccaacttcacgaagatgaccatcaatggcaccttcactatcaggagcaattgtttgtg |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
44133310 |
cccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatggctccttcactatctggagcaattgtttgtg |
44133219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 44129305 - 44129014
Alignment:
| Q |
1 |
gcacttgacatatttccatattcacttagcacctcccgtgtggctctcatcttttcgggctttaaggctaacttttgctctacttggtctagaattgcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || | |||||| |||||||||| || |||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
44129305 |
gcacttgacatatttccatattcactaagcacttctctggtggctttcatcttttcaggttttaaggctaacttttgctcaacttgatctagaattgcag |
44129206 |
T |
|
| Q |
101 |
gtccaccagggtgtgcaatccaaaagattgagttgtaatcagagattcccaatggttggaaagcctcaactaatgctttatttatattttttgacacaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||| |||||||||||| || |||||||| || || ||||| ||||| |
|
|
| T |
44129205 |
gtccaccagggtgtgcaatccaaaagattgaattgtaatcagaaattcctaatggttcgaaagcctcaaccaaagctttattgatgttctttgaaacaat |
44129106 |
T |
|
| Q |
201 |
cccaggaacatctttaagaaggtgaaatgttaacccaacttcacgaagatgaccatcaatggcaccttcactatcaggagcaattgtttgtg |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
44129105 |
cccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatggctccttcactatctggagcaattgtttgtg |
44129014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 44141932 - 44141641
Alignment:
| Q |
1 |
gcacttgacatatttccatattcacttagcacctcccgtgtggctctcatcttttcgggctttaaggctaacttttgctctacttggtctagaattgcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || | |||||| |||||||||| || |||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
44141932 |
gcacttgacatatttccatattcactaagcacttctctggtggctttcatcttttcaggttttaaggctaacttttgctcaacttgatctagaattgcag |
44141833 |
T |
|
| Q |
101 |
gtccaccagggtgtgcaatccaaaagattgagttgtaatcagagattcccaatggttggaaagcctcaactaatgctttatttatattttttgacacaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||| |||||||||||| ||||||||||| || || ||||| ||||| |
|
|
| T |
44141832 |
gtccaccagggtgtgcaatccaaaagattgaattgtaatcagaaattcctaatggttcgaaagcctcaaccaatgctttattgatgttctttgaaacaat |
44141733 |
T |
|
| Q |
201 |
cccaggaacatctttaagaaggtgaaatgttaacccaacttcacgaagatgaccatcaatggcaccttcactatcaggagcaattgtttgtg |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||| ||||| |||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
44141732 |
cccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccgtcaatggccccttcactatctggagcaattgtttgtg |
44141641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 24163181 - 24163479
Alignment:
| Q |
1 |
gcacttgacatatttccatattcacttagcacctcccgtgtggctctcatcttttcgggctttaaggctaacttttgctctacttggtctagaattgcag |
100 |
Q |
| |
|
||||||||||| || ||||||||||| |||| | | ||||| ||||||||||| || || ||||||||||||| ||| | || |||||||||||| | |
|
|
| T |
24163181 |
gcacttgacatgttaccatattcactaagcatttttctagtggcactcatcttttcaggtttcaaggctaacttttcctcaattttgtctagaattgcgg |
24163280 |
T |
|
| Q |
101 |
gtccaccagggtgtgcaatccaaaagattgagttgtaatcagagattcccaatggttggaaagcctcaactaatgctttatttatattttttgacacaat |
200 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||| || ||||||||||| ||||||| |||||||||| ||||| ||||| ||||| |
|
|
| T |
24163281 |
gtccaccagagtgagcaatccaaaagattgagttgtaatcagagatacctaatggttggaatgcctcaaacaatgctttatcaatattctttgagacaat |
24163380 |
T |
|
| Q |
201 |
cccaggaacatctttaagaaggtgaaatgttaacccaacttcacgaagatgaccatcaatggcaccttcactatcaggagcaattgtttgtgatgtcca |
299 |
Q |
| |
|
| |||||||| ||| ||| ||||||| || ||||| ||||||||| || ||| ||| || |||||||||| ||||| |||||||||| |||||| |
|
|
| T |
24163381 |
gtctggaacatccttacaaagatgaaatgatagcccaaattcacgaagttggccacaaatagctccttcactatttggagcgattgtttgtgctgtcca |
24163479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 82 - 275
Target Start/End: Original strand, 37858836 - 37859029
Alignment:
| Q |
82 |
acttggtctagaattgcaggtccaccagggtgtgcaatccaaaagattgagttgtaatcagagattcccaatggttggaaagcctcaactaatgctttat |
181 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| ||||||||||| || |||||||||||||| || || ||||| || |||||| | | ||||| | |
|
|
| T |
37858836 |
acttggtccagaattgctggtccaccagggtgtgcgatccaaaagatggaattgtaatcagagatacctaaaggttgaaaggcctcagcaagagctttct |
37858935 |
T |
|
| Q |
182 |
ttatattttttgacacaatcccaggaacatctttaagaaggtgaaatgttaacccaacttcacgaagatgaccatcaatggcaccttcactatc |
275 |
Q |
| |
|
|| || ||||| | || ||||||||||| || || || || ||||| | ||| ||||||||||| ||||| ||||| || ||||||||||| |
|
|
| T |
37858936 |
caatgttctttgagataagaccaggaacatccttgaggagatggaatgtaagcccgacttcacgaaggtgaccgtcaattgctccttcactatc |
37859029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 37862781 - 37863072
Alignment:
| Q |
1 |
gcacttgacatatttccatattcacttagcacctcccgtgtggctctcatcttttcgggctttaaggctaacttttgctctacttggtctagaattgcag |
100 |
Q |
| |
|
||||||||||| || |||||||| || || || | || |||||| ||| || || ||||||||| |||| || | || |||||||| |||||||| | |
|
|
| T |
37862781 |
gcacttgacatgttaccatattcgctaagtacatgtcgagtggcttgcattttctctggctttaagcctaatttgagttcaacttggtcaagaattgctg |
37862880 |
T |
|
| Q |
101 |
gtccaccagggtgtgcaatccaaaagattgagttgtaatcagagattcccaatggttggaaagcctcaactaatgctttatttatattttttgacacaat |
200 |
Q |
| |
|
||||||| ||||| || ||||||||||| || |||||||| ||||| ||| || || || |||||||| | ||||| | || || ||||| |||| |
|
|
| T |
37862881 |
gtccacctgggtgcgcgatccaaaagatggaattgtaatccgagatattcaaaggctgaaatgcctcaacaagagctttctcaatgttctttgagacaag |
37862980 |
T |
|
| Q |
201 |
cccaggaacatctttaagaaggtgaaatgttaacccaacttcacgaagatgaccatcaatggcaccttcactatcaggagcaattgtttgtg |
292 |
Q |
| |
|
||||||||||| || || || || ||||| | || |||| ||||| ||||||||||| || ||||||||||| ||| | |||||||||| |
|
|
| T |
37862981 |
gccaggaacatccttgaggagatggaatgtcagtcctgcttctcgaaggtgaccatcaatagctccttcactatctggaacgattgtttgtg |
37863072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 146
Target Start/End: Complemental strand, 39030721 - 39030657
Alignment:
| Q |
82 |
acttggtctagaattgcaggtccaccagggtgtgcaatccaaaagattgagttgtaatcagagat |
146 |
Q |
| |
|
|||||||| |||||||| |||| || ||||||||||||||||| ||||| |||||||| ||||| |
|
|
| T |
39030721 |
acttggtcaagaattgctcgtccgcctgggtgtgcaatccaaaaaattgaattgtaatcggagat |
39030657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 52 - 170
Target Start/End: Complemental strand, 35251491 - 35251373
Alignment:
| Q |
52 |
ttttcgggctttaaggctaacttttgctctacttggtctagaattgcaggtccaccagggtgtgcaatccaaaagattgagttgtaatcagagattccca |
151 |
Q |
| |
|
||||| ||||| ||| ||||||| | ||| |||||||| ||||| || |||||||| | ||| |||||||||||||||||||| |||| ||| || |||| |
|
|
| T |
35251491 |
ttttcaggcttcaagcctaacttgtcctcaacttggtcaagaatcgctggtccacccgtgtgagcaatccaaaagattgagttataataagatataccca |
35251392 |
T |
|
| Q |
152 |
atggttggaaagcctcaac |
170 |
Q |
| |
|
| |||| ||| || ||||| |
|
|
| T |
35251391 |
aaggtttgaaggcttcaac |
35251373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 292
Target Start/End: Complemental strand, 35251342 - 35251258
Alignment:
| Q |
208 |
acatctttaagaaggtgaaatgttaacccaacttcacgaagatgaccatcaatggcaccttcactatcaggagcaattgtttgtg |
292 |
Q |
| |
|
||||| || ||||| || ||||||| ||||| |||||||| ||||||||||| || |||| |||||||||| |||||||||| |
|
|
| T |
35251342 |
acatccttgagaagatggaatgttagtccaacctcacgaaggtgaccatcaatagctccttgactatcaggaaggattgtttgtg |
35251258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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