View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8810_low_9 (Length: 273)
Name: NF8810_low_9
Description: NF8810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 20 - 260
Target Start/End: Original strand, 34962383 - 34962623
Alignment:
| Q |
20 |
gagtgttgtcacgcgccaccacactctcctccctccctcgtctcaacaaacttcatcgtgaacatctcaccaatggcgcttccatcctctccgtgaaatc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34962383 |
gagtgttgtcacgcgccaccacactctcctccctccctcgtctcaacaaacttcatcgtgaacatctcaccaatggcgcttccatcctctccgtgaaatc |
34962482 |
T |
|
| Q |
120 |
gatcggatcagtctctgatggcgggaaccttgtctttggaagacaacttcgtcctgaactctgttcacctgctcttaagaaaagtggtgtactcctccgt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34962483 |
gatcggatcagtctctgatggcgggaaccttgtctttggaagacaacttcgtcctgaactctgttcacctgctcttaagaaaagtggtgtactcctccgt |
34962582 |
T |
|
| Q |
220 |
ccttgcctcgctgctgccgatgattccgccgggtgatgtcc |
260 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
34962583 |
ccttgcctcgccgctgccgatgattccgccgggtgaggtcc |
34962623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University