View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8811_high_12 (Length: 238)
Name: NF8811_high_12
Description: NF8811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8811_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 488334 - 488116
Alignment:
| Q |
1 |
cctttgaagataaaacaatatatgccttagtgcagtgtaccagagatctagcagctaatgattgcagtaggtgtctactaagtgctattggagatatacc |
100 |
Q |
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| T |
488334 |
cctttgaagataaaacaatatatgccttagtgcagtgtaccagagatctagcagctaatgattgcagtaggtgtctactaagtgctattggagatatacc |
488235 |
T |
|
| Q |
101 |
aggttgctgttatgcctccattggtgcgagagttatgagtcgtagctgttatctgagatatgaattctatccattttatcttggtgaaaaagaacaaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
488234 |
aggttgctgttatgcctccattggtgcgagagttatgagtcgcagctgttatctgagatatgaattctatccattttatcttggtgaaaaagaacaaaca |
488135 |
T |
|
| Q |
201 |
aagtcttctaccaacctag |
219 |
Q |
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||||||||||||||||||| |
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| T |
488134 |
aagtcttctaccaacctag |
488116 |
T |
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