View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8811_high_13 (Length: 226)
Name: NF8811_high_13
Description: NF8811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8811_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 15 - 209
Target Start/End: Original strand, 31061144 - 31061337
Alignment:
| Q |
15 |
agacagagaaactagtattaagcgtcagaaaaataatttccacaaaacagaaatcaactttagttctaaactttcaaaacatataaaagtagtttacaaa |
114 |
Q |
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| T |
31061144 |
agacagagaa-ctagtattaagcgtcagaaaaataatttccacaaaacagaaatgaactttagttctaaactttcaaaacatataaaagtagtttacaaa |
31061242 |
T |
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| Q |
115 |
tggaatcctctagtctagtaatacaattctttgatgaagatgctaatctcttttataaaatttcatcgactcatcagcaatttctctgtcatagt |
209 |
Q |
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| T |
31061243 |
tggaatcctctagtctagtaatacaattctttgatgaagatgctaatctcttttataaaatttcatcgactcatcagcaatttctctgtcatagt |
31061337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 38 - 128
Target Start/End: Original strand, 3414037 - 3414130
Alignment:
| Q |
38 |
gtcagaaaaataatttccacaaaacagaaatcaactttagttctaaac---tttcaaaacatataaaagtagtttacaaatggaatcctctagt |
128 |
Q |
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| T |
3414037 |
gtcagaaaaataattaccacaaaatagaaatcaaattcagctctaaacttatttcaaagcatataaaagtagttcagaaagggaatcctctagt |
3414130 |
T |
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