View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8811_high_14 (Length: 221)

Name: NF8811_high_14
Description: NF8811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8811_high_14
NF8811_high_14
[»] chr4 (10 HSPs)
chr4 (83-185)||(50455040-50455140)
chr4 (185-214)||(1299056-1299085)
chr4 (185-214)||(18417801-18417830)
chr4 (188-221)||(42274630-42274663)
chr4 (186-214)||(530668-530696)
chr4 (186-214)||(1298911-1298939)
chr4 (186-214)||(24915793-24915821)
chr4 (186-214)||(43486199-43486227)
chr4 (186-214)||(52824238-52824266)
chr4 (186-214)||(55107668-55107696)
[»] chr8 (4 HSPs)
chr8 (184-221)||(38629611-38629648)
chr8 (184-214)||(8210320-8210350)
chr8 (186-214)||(15882199-15882227)
chr8 (186-214)||(15882345-15882373)
[»] chr2 (10 HSPs)
chr2 (184-221)||(1924118-1924155)
chr2 (186-221)||(45408624-45408659)
chr2 (184-214)||(9281491-9281521)
chr2 (187-221)||(22269722-22269756)
chr2 (188-221)||(10553018-10553051)
chr2 (184-221)||(34490453-34490490)
chr2 (185-214)||(34490600-34490629)
chr2 (186-214)||(7737209-7737237)
chr2 (186-214)||(16705732-16705760)
chr2 (186-214)||(24101831-24101859)
[»] chr1 (18 HSPs)
chr1 (185-221)||(4299532-4299568)
chr1 (186-221)||(47940708-47940743)
chr1 (187-221)||(25297984-25298018)
chr1 (184-214)||(27240921-27240951)
chr1 (184-214)||(40647262-40647292)
chr1 (184-214)||(48954358-48954388)
chr1 (185-214)||(2854676-2854705)
chr1 (188-221)||(14387152-14387185)
chr1 (185-214)||(19797125-19797154)
chr1 (184-213)||(36880656-36880685)
chr1 (185-214)||(50162536-50162565)
chr1 (184-213)||(50627128-50627157)
chr1 (186-214)||(5189468-5189496)
chr1 (186-214)||(19955055-19955083)
chr1 (186-214)||(42561439-42561467)
chr1 (186-214)||(48954213-48954241)
chr1 (186-214)||(49285119-49285147)
chr1 (186-214)||(51789596-51789624)
[»] chr3 (20 HSPs)
chr3 (186-221)||(4072411-4072446)
chr3 (186-221)||(12789605-12789640)
chr3 (184-214)||(21969301-21969331)
chr3 (184-214)||(21991737-21991767)
chr3 (184-214)||(26906451-26906481)
chr3 (184-214)||(32237538-32237568)
chr3 (184-214)||(39850489-39850519)
chr3 (184-214)||(45487943-45487973)
chr3 (185-214)||(25488485-25488514)
chr3 (185-214)||(25561009-25561038)
chr3 (184-213)||(36278753-36278782)
chr3 (184-213)||(36657430-36657459)
chr3 (184-213)||(36822757-36822786)
chr3 (186-214)||(10441402-10441430)
chr3 (186-214)||(21969156-21969184)
chr3 (186-214)||(21991592-21991620)
chr3 (185-213)||(26906599-26906627)
chr3 (189-221)||(32237396-32237428)
chr3 (186-214)||(45487798-45487826)
chr3 (186-214)||(50099578-50099606)
[»] chr7 (8 HSPs)
chr7 (184-214)||(10936614-10936644)
chr7 (184-213)||(38883218-38883247)
chr7 (186-214)||(30594692-30594720)
chr7 (186-214)||(31231760-31231788)
chr7 (186-214)||(33721826-33721854)
chr7 (186-214)||(34052423-34052451)
chr7 (186-214)||(35339277-35339305)
chr7 (186-214)||(38528556-38528584)
[»] chr6 (10 HSPs)
chr6 (184-214)||(885382-885412)
chr6 (184-214)||(885529-885559)
chr6 (187-221)||(18998117-18998151)
chr6 (184-214)||(21379938-21379968)
chr6 (184-221)||(4890477-4890514)
chr6 (188-221)||(7808610-7808643)
chr6 (186-214)||(5416658-5416686)
chr6 (185-213)||(11687141-11687169)
chr6 (186-214)||(15546776-15546804)
chr6 (186-214)||(21380085-21380113)
[»] scaffold0188 (1 HSPs)
scaffold0188 (184-221)||(7083-7120)
[»] scaffold0122 (1 HSPs)
scaffold0122 (186-214)||(45833-45861)
[»] scaffold0107 (2 HSPs)
scaffold0107 (186-214)||(51062-51090)
scaffold0107 (186-214)||(51207-51235)
[»] scaffold0069 (2 HSPs)
scaffold0069 (186-214)||(26404-26432)
scaffold0069 (186-214)||(26465-26493)
[»] chr5 (1 HSPs)
chr5 (186-214)||(20476575-20476603)


Alignment Details
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 83 - 185
Target Start/End: Original strand, 50455040 - 50455140
Alignment:
Q  83 atagggtttgagttaaaaaattctttatcctattataatgtaatgggttattcttgaaaaatgaaataaaaatgcaacttcttattaaatatgaaatgat 182  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||    
T  50455040 atagggtttgagttaaaatattcttaatcctattataatgtaatgggttattcttgaaaaatgaaat--aaatgcaacttcttattaaatatgaattgat 50455137  T
Q  183 ctt 185  Q
    |||    
T  50455138 ctt 50455140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 185 - 214
Target Start/End: Complemental strand, 1299085 - 1299056
Alignment:
Q  185 taggagaaaacttaggtacaattccttagg 214  Q
    ||||||||||||||||||||||||||||||    
T  1299085 taggagaaaacttaggtacaattccttagg 1299056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 185 - 214
Target Start/End: Complemental strand, 18417830 - 18417801
Alignment:
Q  185 taggagaaaacttaggtacaattccttagg 214  Q
    ||||||||||||||||||||||||||||||    
T  18417830 taggagaaaacttaggtacaattccttagg 18417801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 42274663 - 42274630
Alignment:
Q  188 gagaaaacttaggtacaattccttaggggttttt 221  Q
    ||||||||||||||||||||||||||| ||||||    
T  42274663 gagaaaacttaggtacaattccttaggtgttttt 42274630  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Original strand, 530668 - 530696
Alignment:
Q  186 aggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||    
T  530668 aggagaaaacttaggtacaattccttagg 530696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Original strand, 1298911 - 1298939
Alignment:
Q  186 aggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||    
T  1298911 aggagaaaacttaggtacaattccttagg 1298939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Original strand, 24915793 - 24915821
Alignment:
Q  186 aggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||    
T  24915793 aggagaaaacttaggtacaattccttagg 24915821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Original strand, 43486199 - 43486227
Alignment:
Q  186 aggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||    
T  43486199 aggagaaaacttaggtacaattccttagg 43486227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Original strand, 52824238 - 52824266
Alignment:
Q  186 aggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||    
T  52824238 aggagaaaacttaggtacaattccttagg 52824266  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 55107696 - 55107668
Alignment:
Q  186 aggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||    
T  55107696 aggagaaaacttaggtacaattccttagg 55107668  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 38629648 - 38629611
Alignment:
Q  184 ttaggagaaaacttaggtacaattccttaggggttttt 221  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  38629648 ttaggagaaaacttaggtacaattccttaggtgttttt 38629611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 214
Target Start/End: Original strand, 8210320 - 8210350
Alignment:
Q  184 ttaggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||||    
T  8210320 ttaggagaaaacttaggtacaattccttagg 8210350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Original strand, 15882199 - 15882227
Alignment:
Q  186 aggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||    
T  15882199 aggagaaaacttaggtacaattccttagg 15882227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 15882373 - 15882345
Alignment:
Q  186 aggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||    
T  15882373 aggagaaaacttaggtacaattccttagg 15882345  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 1924155 - 1924118
Alignment:
Q  184 ttaggagaaaacttaggtacaattccttaggggttttt 221  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  1924155 ttaggagaaaacttaggtacaattccttaggtgttttt 1924118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Original strand, 45408624 - 45408659
Alignment:
Q  186 aggagaaaacttaggtacaattccttaggggttttt 221  Q
    ||||||||||||||||||||||||||||| ||||||    
T  45408624 aggagaaaacttaggtacaattccttaggtgttttt 45408659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 214
Target Start/End: Complemental strand, 9281521 - 9281491
Alignment:
Q  184 ttaggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||||    
T  9281521 ttaggagaaaacttaggtacaattccttagg 9281491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 22269722 - 22269756
Alignment:
Q  187 ggagaaaacttaggtacaattccttaggggttttt 221  Q
    |||||||||||||||||||||||||||| ||||||    
T  22269722 ggagaaaacttaggtacaattccttaggtgttttt 22269756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 10553051 - 10553018
Alignment:
Q  188 gagaaaacttaggtacaattccttaggggttttt 221  Q
    ||||||||||||||||||||||||||| ||||||    
T  10553051 gagaaaacttaggtacaattccttaggtgttttt 10553018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 34490453 - 34490490
Alignment:
Q  184 ttaggagaaaacttaggtacaattccttaggggttttt 221  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  34490453 ttaggagaaaacttaggtacaattctttaggtgttttt 34490490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 185 - 214
Target Start/End: Complemental strand, 34490629 - 34490600
Alignment:
Q  185 taggagaaaacttaggtacaattccttagg 214  Q
    ||||||||||||||||||||||||||||||    
T  34490629 taggagaaaacttaggtacaattccttagg 34490600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 7737237 - 7737209
Alignment:
Q  186 aggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||    
T  7737237 aggagaaaacttaggtacaattccttagg 7737209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Original strand, 16705732 - 16705760
Alignment:
Q  186 aggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||    
T  16705732 aggagaaaacttaggtacaattccttagg 16705760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Original strand, 24101831 - 24101859
Alignment:
Q  186 aggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||    
T  24101831 aggagaaaacttaggtacaattccttagg 24101859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 4299568 - 4299532
Alignment:
Q  185 taggagaaaacttaggtacaattccttaggggttttt 221  Q
    |||||||||||||||||||||||||||||| ||||||    
T  4299568 taggagaaaacttaggtacaattccttaggtgttttt 4299532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Complemental strand, 47940743 - 47940708
Alignment:
Q  186 aggagaaaacttaggtacaattccttaggggttttt 221  Q
    ||||||||||||||||||||||||||||| ||||||    
T  47940743 aggagaaaacttaggtacaattccttaggtgttttt 47940708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Complemental strand, 25298018 - 25297984
Alignment:
Q  187 ggagaaaacttaggtacaattccttaggggttttt 221  Q
    |||||||||||||||||||||||||||| ||||||    
T  25298018 ggagaaaacttaggtacaattccttaggtgttttt 25297984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 214
Target Start/End: Original strand, 27240921 - 27240951
Alignment:
Q  184 ttaggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||||    
T  27240921 ttaggagaaaacttaggtacaattccttagg 27240951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 214
Target Start/End: Complemental strand, 40647292 - 40647262
Alignment:
Q  184 ttaggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||||    
T  40647292 ttaggagaaaacttaggtacaattccttagg 40647262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 214
Target Start/End: Complemental strand, 48954388 - 48954358
Alignment:
Q  184 ttaggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||||    
T  48954388 ttaggagaaaacttaggtacaattccttagg 48954358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 185 - 214
Target Start/End: Complemental strand, 2854705 - 2854676
Alignment:
Q  185 taggagaaaacttaggtacaattccttagg 214  Q
    ||||||||||||||||||||||||||||||    
T  2854705 taggagaaaacttaggtacaattccttagg 2854676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 14387185 - 14387152
Alignment:
Q  188 gagaaaacttaggtacaattccttaggggttttt 221  Q
    ||||||||||||||||||||||||||| ||||||    
T  14387185 gagaaaacttaggtacaattccttaggtgttttt 14387152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 185 - 214
Target Start/End: Complemental strand, 19797154 - 19797125
Alignment:
Q  185 taggagaaaacttaggtacaattccttagg 214  Q
    ||||||||||||||||||||||||||||||    
T  19797154 taggagaaaacttaggtacaattccttagg 19797125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 213
Target Start/End: Complemental strand, 36880685 - 36880656
Alignment:
Q  184 ttaggagaaaacttaggtacaattccttag 213  Q
    ||||||||||||||||||||||||||||||    
T  36880685 ttaggagaaaacttaggtacaattccttag 36880656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 185 - 214
Target Start/End: Original strand, 50162536 - 50162565
Alignment:
Q  185 taggagaaaacttaggtacaattccttagg 214  Q
    ||||||||||||||||||||||||||||||    
T  50162536 taggagaaaacttaggtacaattccttagg 50162565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 213
Target Start/End: Original strand, 50627128 - 50627157
Alignment:
Q  184 ttaggagaaaacttaggtacaattccttag 213  Q
    ||||||||||||||||||||||||||||||    
T  50627128 ttaggagaaaacttaggtacaattccttag 50627157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Original strand, 5189468 - 5189496
Alignment:
Q  186 aggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||    
T  5189468 aggagaaaacttaggtacaattccttagg 5189496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 19955083 - 19955055
Alignment:
Q  186 aggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||    
T  19955083 aggagaaaacttaggtacaattccttagg 19955055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 42561467 - 42561439
Alignment:
Q  186 aggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||    
T  42561467 aggagaaaacttaggtacaattccttagg 42561439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Original strand, 48954213 - 48954241
Alignment:
Q  186 aggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||    
T  48954213 aggagaaaacttaggtacaattccttagg 48954241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 49285147 - 49285119
Alignment:
Q  186 aggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||    
T  49285147 aggagaaaacttaggtacaattccttagg 49285119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Original strand, 51789596 - 51789624
Alignment:
Q  186 aggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||    
T  51789596 aggagaaaacttaggtacaattccttagg 51789624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Complemental strand, 4072446 - 4072411
Alignment:
Q  186 aggagaaaacttaggtacaattccttaggggttttt 221  Q
    ||||||||||||||||||||||||||||| ||||||    
T  4072446 aggagaaaacttaggtacaattccttaggtgttttt 4072411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Original strand, 12789605 - 12789640
Alignment:
Q  186 aggagaaaacttaggtacaattccttaggggttttt 221  Q
    ||||||||||||||||||||||||||||| ||||||    
T  12789605 aggagaaaacttaggtacaattccttaggtgttttt 12789640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 214
Target Start/End: Complemental strand, 21969331 - 21969301
Alignment:
Q  184 ttaggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||||    
T  21969331 ttaggagaaaacttaggtacaattccttagg 21969301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 214
Target Start/End: Complemental strand, 21991767 - 21991737
Alignment:
Q  184 ttaggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||||    
T  21991767 ttaggagaaaacttaggtacaattccttagg 21991737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 214
Target Start/End: Original strand, 26906451 - 26906481
Alignment:
Q  184 ttaggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||||    
T  26906451 ttaggagaaaacttaggtacaattccttagg 26906481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 214
Target Start/End: Complemental strand, 32237568 - 32237538
Alignment:
Q  184 ttaggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||||    
T  32237568 ttaggagaaaacttaggtacaattccttagg 32237538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 214
Target Start/End: Complemental strand, 39850519 - 39850489
Alignment:
Q  184 ttaggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||||    
T  39850519 ttaggagaaaacttaggtacaattccttagg 39850489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 214
Target Start/End: Complemental strand, 45487973 - 45487943
Alignment:
Q  184 ttaggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||||    
T  45487973 ttaggagaaaacttaggtacaattccttagg 45487943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 185 - 214
Target Start/End: Complemental strand, 25488514 - 25488485
Alignment:
Q  185 taggagaaaacttaggtacaattccttagg 214  Q
    ||||||||||||||||||||||||||||||    
T  25488514 taggagaaaacttaggtacaattccttagg 25488485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 185 - 214
Target Start/End: Original strand, 25561009 - 25561038
Alignment:
Q  185 taggagaaaacttaggtacaattccttagg 214  Q
    ||||||||||||||||||||||||||||||    
T  25561009 taggagaaaacttaggtacaattccttagg 25561038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 213
Target Start/End: Original strand, 36278753 - 36278782
Alignment:
Q  184 ttaggagaaaacttaggtacaattccttag 213  Q
    ||||||||||||||||||||||||||||||    
T  36278753 ttaggagaaaacttaggtacaattccttag 36278782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 213
Target Start/End: Original strand, 36657430 - 36657459
Alignment:
Q  184 ttaggagaaaacttaggtacaattccttag 213  Q
    ||||||||||||||||||||||||||||||    
T  36657430 ttaggagaaaacttaggtacaattccttag 36657459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 213
Target Start/End: Original strand, 36822757 - 36822786
Alignment:
Q  184 ttaggagaaaacttaggtacaattccttag 213  Q
    ||||||||||||||||||||||||||||||    
T  36822757 ttaggagaaaacttaggtacaattccttag 36822786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 10441430 - 10441402
Alignment:
Q  186 aggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||    
T  10441430 aggagaaaacttaggtacaattccttagg 10441402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Original strand, 21969156 - 21969184
Alignment:
Q  186 aggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||    
T  21969156 aggagaaaacttaggtacaattccttagg 21969184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Original strand, 21991592 - 21991620
Alignment:
Q  186 aggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||    
T  21991592 aggagaaaacttaggtacaattccttagg 21991620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 26906627 - 26906599
Alignment:
Q  185 taggagaaaacttaggtacaattccttag 213  Q
    |||||||||||||||||||||||||||||    
T  26906627 taggagaaaacttaggtacaattccttag 26906599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 32237396 - 32237428
Alignment:
Q  189 agaaaacttaggtacaattccttaggggttttt 221  Q
    |||||||||||||||||||||||||| ||||||    
T  32237396 agaaaacttaggtacaattccttaggtgttttt 32237428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Original strand, 45487798 - 45487826
Alignment:
Q  186 aggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||    
T  45487798 aggagaaaacttaggtacaattccttagg 45487826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 50099606 - 50099578
Alignment:
Q  186 aggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||    
T  50099606 aggagaaaacttaggtacaattccttagg 50099578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 214
Target Start/End: Complemental strand, 10936644 - 10936614
Alignment:
Q  184 ttaggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||||    
T  10936644 ttaggagaaaacttaggtacaattccttagg 10936614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 213
Target Start/End: Original strand, 38883218 - 38883247
Alignment:
Q  184 ttaggagaaaacttaggtacaattccttag 213  Q
    ||||||||||||||||||||||||||||||    
T  38883218 ttaggagaaaacttaggtacaattccttag 38883247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Original strand, 30594692 - 30594720
Alignment:
Q  186 aggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||    
T  30594692 aggagaaaacttaggtacaattccttagg 30594720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 31231788 - 31231760
Alignment:
Q  186 aggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||    
T  31231788 aggagaaaacttaggtacaattccttagg 31231760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Original strand, 33721826 - 33721854
Alignment:
Q  186 aggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||    
T  33721826 aggagaaaacttaggtacaattccttagg 33721854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 34052451 - 34052423
Alignment:
Q  186 aggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||    
T  34052451 aggagaaaacttaggtacaattccttagg 34052423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Original strand, 35339277 - 35339305
Alignment:
Q  186 aggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||    
T  35339277 aggagaaaacttaggtacaattccttagg 35339305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 38528584 - 38528556
Alignment:
Q  186 aggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||    
T  38528584 aggagaaaacttaggtacaattccttagg 38528556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 214
Target Start/End: Original strand, 885382 - 885412
Alignment:
Q  184 ttaggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||||    
T  885382 ttaggagaaaacttaggtacaattccttagg 885412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 214
Target Start/End: Complemental strand, 885559 - 885529
Alignment:
Q  184 ttaggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||||    
T  885559 ttaggagaaaacttaggtacaattccttagg 885529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 18998117 - 18998151
Alignment:
Q  187 ggagaaaacttaggtacaattccttaggggttttt 221  Q
    |||||||||||||||||||||||||||| ||||||    
T  18998117 ggagaaaacttaggtacaattccttaggtgttttt 18998151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 214
Target Start/End: Original strand, 21379938 - 21379968
Alignment:
Q  184 ttaggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||||    
T  21379938 ttaggagaaaacttaggtacaattccttagg 21379968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 4890477 - 4890514
Alignment:
Q  184 ttaggagaaaacttaggtacaattccttaggggttttt 221  Q
    |||||||||||||||||||||||| |||||| ||||||    
T  4890477 ttaggagaaaacttaggtacaatttcttaggtgttttt 4890514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 188 - 221
Target Start/End: Original strand, 7808610 - 7808643
Alignment:
Q  188 gagaaaacttaggtacaattccttaggggttttt 221  Q
    ||||||||||||||||||||||||||| ||||||    
T  7808610 gagaaaacttaggtacaattccttaggtgttttt 7808643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 5416686 - 5416658
Alignment:
Q  186 aggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||    
T  5416686 aggagaaaacttaggtacaattccttagg 5416658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 11687141 - 11687169
Alignment:
Q  185 taggagaaaacttaggtacaattccttag 213  Q
    |||||||||||||||||||||||||||||    
T  11687141 taggagaaaacttaggtacaattccttag 11687169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 15546804 - 15546776
Alignment:
Q  186 aggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||    
T  15546804 aggagaaaacttaggtacaattccttagg 15546776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 21380113 - 21380085
Alignment:
Q  186 aggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||    
T  21380113 aggagaaaacttaggtacaattccttagg 21380085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 7083 - 7120
Alignment:
Q  184 ttaggagaaaacttaggtacaattccttaggggttttt 221  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  7083 ttaggagaaaatttaggtacaattccttaggtgttttt 7120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Original strand, 45833 - 45861
Alignment:
Q  186 aggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||    
T  45833 aggagaaaacttaggtacaattccttagg 45861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Original strand, 51062 - 51090
Alignment:
Q  186 aggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||    
T  51062 aggagaaaacttaggtacaattccttagg 51090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 51235 - 51207
Alignment:
Q  186 aggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||    
T  51235 aggagaaaacttaggtacaattccttagg 51207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Original strand, 26404 - 26432
Alignment:
Q  186 aggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||    
T  26404 aggagaaaacttaggtacaattccttagg 26432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 26493 - 26465
Alignment:
Q  186 aggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||    
T  26493 aggagaaaacttaggtacaattccttagg 26465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 20476603 - 20476575
Alignment:
Q  186 aggagaaaacttaggtacaattccttagg 214  Q
    |||||||||||||||||||||||||||||    
T  20476603 aggagaaaacttaggtacaattccttagg 20476575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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