View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8811_high_3 (Length: 359)

Name: NF8811_high_3

Description: NF8811

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF8811_high_3

[»] chr6 (1 HSPs)

[»] chr8 (1 HSPs)

Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 1)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 189; E-Value: 1e-102

Query Start/End: Original strand, 118 - 342

Target Start/End: Original strand, 29526108 - 29526332

Alignment:

Q	118	gtttggtggtcatatctgcaggattgtactaagtatggaactcgaccacatcaatcaatttaannnnnnnncaataacatctcttatgaaatcgagccta	217	Q
		\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	29526108	gtttagtgatcatatctgcaggattgtactaagtatggaacttgaccacatcaatcaatttaattttttttcaataacatctcttatgaaatcgagccta	29526207	T

Q	218	acatcaatgcattaggtgctttcatgatacatttgattttttctcaagtaaattgaactttaactatcacaatgtatacaaattgaattctgtttcaaac	317	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	29526208	acatcaatgcattaggtgctttcatgatacatttgattttttctcaagtaaattgaactttaactatcacaatgtatacaaattgaattctgtttcaaac	29526307	T

Q	318	tcagttcctaaactaaacctttaat	342	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	29526308	tcagttcctaaactaaacctttaat	29526332	T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 39; E-Value: 0.0000000000005

Query Start/End: Original strand, 17 - 76

Target Start/End: Complemental strand, 22218383 - 22218318

Alignment:

Q	17	aaaagagacatcaaatcggtatgctgttgcta------tctttttgttgtgtaatgttgctttaat	76	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	22218383	aaaagagacatcaaatcggtattctgttgctaacttcatctttttgttgtgtaatgttgctttaat	22218318	T

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