View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8811_high_7 (Length: 258)
Name: NF8811_high_7
Description: NF8811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8811_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 20 - 248
Target Start/End: Complemental strand, 45148481 - 45148253
Alignment:
| Q |
20 |
aaccagacaacatgacattccatgaaacagcatccttttgaggcattaaatcaaacaagttgcgggcatcaacgagtctgcgatttttgacatagccagt |
119 |
Q |
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| T |
45148481 |
aaccagacaacatgacattccatgaaacagcatccttttgaggcattaaatcaaacaagttgcgggcatcaacgagtctgcgatttttgacatagccagt |
45148382 |
T |
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| Q |
120 |
gagcattaagttgcaagaaaacaagttcttgtaaggcatggagtcgaagacacgaagagctaaatggcagtggccattgcgcatgtgagtggaaatggaa |
219 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45148381 |
gagcattaagttccaggaaaacaagttcttgtaaggcatggagtcgaagacacgaagagctaaatggcagtggccattgcgcatgtgagtggaaatggaa |
45148282 |
T |
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| Q |
220 |
ttggtacatttcacaatgtatgtgtctct |
248 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
45148281 |
ttggtacatttcacaatgtatgtgtctct |
45148253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 24137418 - 24137649
Alignment:
| Q |
20 |
aaccagacaacatgacattccatgaaacagcatccttttgaggcattaaatcaaacaagttgcgggcatcaacgagtctgcgatttttgacatagccagt |
119 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| | ||||||||| |||||||| |||||| | |
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| T |
24137418 |
aaccagacaacatgacattccatgaaacaagatccttttgaggcattaaatcaaacaagttgtgggcatcgatgagtctgcggtttttgacgtagccaat |
24137517 |
T |
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| Q |
120 |
gagcattaagtt----gcaagaaaacaagttcttgtaaggcatggagtcgaagacacgaagagctaaatggcagtggccattgcgcatgtgagtggaaat |
215 |
Q |
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|||||||||||| | || ||||||||||||||||||||||| | ||||||||||||||| || | |||||||||||||||||||||| | ||||| |
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| T |
24137518 |
gagcattaagttcaaggaaaacaaacaagttcttgtaaggcatggcattgaagacacgaagagccaagtcgcagtggccattgcgcatgtgaatagaaat |
24137617 |
T |
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| Q |
216 |
ggaattggtacatttcacaatgtatgtgtctc |
247 |
Q |
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||||||||||||||| ||||| |||| ||||| |
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| T |
24137618 |
ggaattggtacatttgacaatatatgggtctc |
24137649 |
T |
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