View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8811_low_1 (Length: 534)
Name: NF8811_low_1
Description: NF8811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8811_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 5 - 516
Target Start/End: Complemental strand, 34145068 - 34144557
Alignment:
| Q |
5 |
caatgtttcgcaatcaacaagtacaagtgtgtagttcttgtactcaccactgtagattctttgatcactttcaacgaacaaaatctacctcgcccaactc |
104 |
Q |
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| T |
34145068 |
caatggttcgcaatcaacaagtaaaagtgtgtagttcttgtactcaccactgtagattctttgatcactttcaacgaacaaaatctacctcgcccaactc |
34144969 |
T |
|
| Q |
105 |
tttctacaacctcatgctttatcaacgagatttccaagttttggtacttcaacatcttcctcaataatttactttccttttcagtgttgaaacaaaatgt |
204 |
Q |
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| T |
34144968 |
tttctacaacctcatgctttatcaacgagatttccaagttttggtacttcaacatcttcctcaataatttactttccttttcagtgttgaaacaaaatgt |
34144869 |
T |
|
| Q |
205 |
taagaacatgcatgttacagatcttcttgcaaaatgtgaatctatttttgagtttgtatttatgatgatgctgcatatttttaacatctttttaaactga |
304 |
Q |
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| T |
34144868 |
taagaacatgcatgttacagatcttcttgcaaaatgtgaatctgtttttgagtttgtatttatgatgatgctgcatatttttaacatctttttaaactga |
34144769 |
T |
|
| Q |
305 |
ctgcaggatcttccttctaagttaaatcctactatgtcattgttggttgatcagaaaatcaatctcgaggattcaaccggtaagagatgggttataacaa |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
34144768 |
ctgcaggatcttccttctaagttaaatcctactatgtcattgttggttgatcagaaaatcaatcttgaggattcaaccggtaagagatgggctataacag |
34144669 |
T |
|
| Q |
405 |
tttcagaagttgatggttcttttgcttttaagaaaggatggggtgatttctcatcggctcacaagcttgaaattggagatttgcttgtattcaactgcat |
504 |
Q |
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| T |
34144668 |
tatcagaagttgatggttcttttgcttttaagaaaggatgggatgatttctcatcggctcacaagcttgaaattggagatttgcttgtattcaactgcat |
34144569 |
T |
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| Q |
505 |
taacaagtataa |
516 |
Q |
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| T |
34144568 |
taacaagtataa |
34144557 |
T |
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