View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8811_low_10 (Length: 287)

Name: NF8811_low_10
Description: NF8811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8811_low_10
NF8811_low_10
[»] chr3 (5 HSPs)
chr3 (28-277)||(36190000-36190236)
chr3 (1-34)||(4238589-4238622)
chr3 (1-34)||(38964387-38964420)
chr3 (1-33)||(22721927-22721959)
chr3 (1-29)||(25113348-25113376)
[»] chr7 (7 HSPs)
chr7 (1-36)||(1738549-1738584)
chr7 (1-30)||(4790350-4790379)
chr7 (1-34)||(7240851-7240884)
chr7 (1-34)||(7482327-7482360)
chr7 (1-33)||(7240745-7240777)
chr7 (1-33)||(22285695-22285727)
chr7 (1-29)||(38441562-38441590)
[»] chr8 (5 HSPs)
chr8 (1-31)||(7012273-7012303)
chr8 (1-34)||(54714-54747)
chr8 (1-30)||(22782003-22782032)
chr8 (4-40)||(15726748-15726784)
chr8 (1-33)||(44498183-44498215)
[»] chr4 (7 HSPs)
chr4 (1-35)||(3422162-3422196)
chr4 (1-34)||(47833606-47833639)
chr4 (1-34)||(47838612-47838645)
chr4 (4-33)||(48196014-48196043)
chr4 (1-33)||(7350182-7350214)
chr4 (1-29)||(43900651-43900679)
chr4 (1-33)||(48336259-48336291)
[»] chr6 (1 HSPs)
chr6 (1-30)||(35031000-35031029)
[»] chr5 (8 HSPs)
chr5 (1-34)||(582984-583017)
chr5 (1-34)||(9395452-9395485)
chr5 (1-30)||(13033050-13033079)
chr5 (1-30)||(13103023-13103052)
chr5 (1-34)||(13103126-13103159)
chr5 (1-34)||(37149057-37149090)
chr5 (1-34)||(37641948-37641981)
chr5 (1-37)||(7053768-7053804)
[»] chr2 (2 HSPs)
chr2 (1-34)||(6648514-6648547)
chr2 (1-33)||(13775832-13775864)
[»] scaffold0204 (1 HSPs)
scaffold0204 (1-33)||(23781-23813)
[»] chr1 (2 HSPs)
chr1 (1-33)||(27159460-27159492)
chr1 (1-33)||(44668195-44668227)


Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 28 - 277
Target Start/End: Complemental strand, 36190236 - 36190000
Alignment:
Q  28 tattattaaatgaggttttcaatacattcacagggtatcttggtccatcactcttgcctcgcctcgcctcgcctcctcctctcagctgcggaaggtaaag 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||    
T  36190236 tattattaaatgaggttttcaatacattcacagggtatcttggtccatcactcttgcctcgcctc-------------ctctcagctgcggaaggtaaag 36190150  T
Q  128 tttcccacttctttgcttctttaactctcgctcgccatcatttgtctttctttcaaacccttatcatcctcgcttagtccttttgctacttcctactcct 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||  ||||||||||||||||||||||    
T  36190149 tttcccacttctttgcttctttaactctcgctcgccatcatttgtctttctttcaaaccctaatcatccacgcttaacccttttgctacttcctactcct 36190050  T
Q  228 ctatcatcgttagttttgtgcttaattttctttttgtcgattggtctctg 277  Q
    | |||||||||||||||||||||||||||||||||||| |||||||||||    
T  36190049 cgatcatcgttagttttgtgcttaattttctttttgtctattggtctctg 36190000  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 4238622 - 4238589
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattatt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  4238622 ttctcttataaataggaccggaggtagtattatt 4238589  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 38964420 - 38964387
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattatt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  38964420 ttctcttataaataggaccggaggtagtattatt 38964387  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 22721959 - 22721927
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattat 33  Q
    |||||||||||||||||||||||| ||||||||    
T  22721959 ttctcttataaataggaccggaggtagtattat 22721927  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 25113376 - 25113348
Alignment:
Q  1 ttctcttataaataggaccggaggaagta 29  Q
    |||||||||||||||||||||||||||||    
T  25113376 ttctcttataaataggaccggaggaagta 25113348  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 1738549 - 1738584
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattattaa 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  1738549 ttctcttataaataggaccggaggtagtattattaa 1738584  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 4790350 - 4790379
Alignment:
Q  1 ttctcttataaataggaccggaggaagtat 30  Q
    ||||||||||||||||||||||||||||||    
T  4790350 ttctcttataaataggaccggaggaagtat 4790379  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 7240851 - 7240884
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattatt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  7240851 ttctcttataaataggaccggagggagtattatt 7240884  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 7482327 - 7482360
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattatt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  7482327 ttctcttataaataggaccggagggagtattatt 7482360  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 7240777 - 7240745
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattat 33  Q
    |||||||||||||||||||||||| ||||||||    
T  7240777 ttctcttataaataggaccggaggtagtattat 7240745  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 22285727 - 22285695
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattat 33  Q
    |||||||||||||||||||||||| ||||||||    
T  22285727 ttctcttataaataggaccggagggagtattat 22285695  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 38441562 - 38441590
Alignment:
Q  1 ttctcttataaataggaccggaggaagta 29  Q
    |||||||||||||||||||||||||||||    
T  38441562 ttctcttataaataggaccggaggaagta 38441590  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 7012273 - 7012303
Alignment:
Q  1 ttctcttataaataggaccggaggaagtatt 31  Q
    |||||||||||||||||||||||||||||||    
T  7012273 ttctcttataaataggaccggaggaagtatt 7012303  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 54714 - 54747
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattatt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  54714 ttctcttataaataggaccggaggtagtattatt 54747  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 22782003 - 22782032
Alignment:
Q  1 ttctcttataaataggaccggaggaagtat 30  Q
    ||||||||||||||||||||||||||||||    
T  22782003 ttctcttataaataggaccggaggaagtat 22782032  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 15726784 - 15726748
Alignment:
Q  4 tcttataaataggaccggaggaagtattattaaatga 40  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  15726784 tcttataaataggatcggaggaagtattcttaaatga 15726748  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 44498215 - 44498183
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattat 33  Q
    |||||||||||||||||||||||| ||||||||    
T  44498215 ttctcttataaataggaccggagggagtattat 44498183  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 3422162 - 3422196
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattatta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  3422162 ttctcttataaataggaccggagggagtattatta 3422196  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 47833639 - 47833606
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattatt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  47833639 ttctcttataaataggaccggaggtagtattatt 47833606  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 47838645 - 47838612
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattatt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  47838645 ttctcttataaataggaccggagggagtattatt 47838612  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 33
Target Start/End: Original strand, 48196014 - 48196043
Alignment:
Q  4 tcttataaataggaccggaggaagtattat 33  Q
    ||||||||||||||||||||||||||||||    
T  48196014 tcttataaataggaccggaggaagtattat 48196043  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 7350214 - 7350182
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  7350214 ttctcttataaataggaccagaggaagtattat 7350182  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 43900651 - 43900679
Alignment:
Q  1 ttctcttataaataggaccggaggaagta 29  Q
    |||||||||||||||||||||||||||||    
T  43900651 ttctcttataaataggaccggaggaagta 43900679  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 48336291 - 48336259
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattat 33  Q
    |||||||||||||||||||||||| ||||||||    
T  48336291 ttctcttataaataggaccggaggtagtattat 48336259  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 35031029 - 35031000
Alignment:
Q  1 ttctcttataaataggaccggaggaagtat 30  Q
    ||||||||||||||||||||||||||||||    
T  35031029 ttctcttataaataggaccggaggaagtat 35031000  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 583017 - 582984
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattatt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  583017 ttctcttataaataggaccggaggtagtattatt 582984  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 9395452 - 9395485
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattatt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  9395452 ttctcttataaataggaccggagggagtattatt 9395485  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 13033079 - 13033050
Alignment:
Q  1 ttctcttataaataggaccggaggaagtat 30  Q
    ||||||||||||||||||||||||||||||    
T  13033079 ttctcttataaataggaccggaggaagtat 13033050  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 13103052 - 13103023
Alignment:
Q  1 ttctcttataaataggaccggaggaagtat 30  Q
    ||||||||||||||||||||||||||||||    
T  13103052 ttctcttataaataggaccggaggaagtat 13103023  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 13103126 - 13103159
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattatt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  13103126 ttctcttataaataggaccggagggagtattatt 13103159  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 37149057 - 37149090
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattatt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  37149057 ttctcttataaataggaccggaggtagtattatt 37149090  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 37641981 - 37641948
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattatt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  37641981 ttctcttataaataggaccggaggtagtattatt 37641948  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 7053768 - 7053804
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattattaaa 37  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  7053768 ttctcttgtaaataggaccggagggagtattattaaa 7053804  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 6648547 - 6648514
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattatt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  6648547 ttctcttataaataggaccggagggagtattatt 6648514  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 13775832 - 13775864
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattat 33  Q
    |||||||||||||||||||||||| ||||||||    
T  13775832 ttctcttataaataggaccggagggagtattat 13775864  T

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Target: scaffold0204 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 23813 - 23781
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattat 33  Q
    |||||||||||||||||||||||| ||||||||    
T  23813 ttctcttataaataggaccggaggtagtattat 23781  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 27159460 - 27159492
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattat 33  Q
    |||||||||||||||||||||||| ||||||||    
T  27159460 ttctcttataaataggaccggaggtagtattat 27159492  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 44668195 - 44668227
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattat 33  Q
    |||||||||||||||||||||||| ||||||||    
T  44668195 ttctcttataaataggaccggaggtagtattat 44668227  T

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