View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8811_low_14 (Length: 250)
Name: NF8811_low_14
Description: NF8811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8811_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 9090686 - 9090925
Alignment:
| Q |
1 |
ccagtcaccagtgttgttgtcaagtgttagcattgttattgtcaaacctgtatcaatccattaattgaccacttttgttgtgcagttcacttttgggcac |
100 |
Q |
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| T |
9090686 |
ccagtcaccagtgttgttgtcaagtgttagcattgttattgtcaaacctgtatcaatccattaattgaccacttttgttgtgcagttcacttttgggcac |
9090785 |
T |
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| Q |
101 |
ctgcatttaagtggggtatcaccgttgccaatgttgctgattttacaaaaccaactgagaagatttcctatcctcatcaaataagtatgtgcatgcatat |
200 |
Q |
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| T |
9090786 |
ctgcatttaagtggggtatcaccgttgccaatgttgctgattttacaaaaccaactgagaagatttcctatcctcaccaaataagtatgtgcatgcatat |
9090885 |
T |
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| Q |
201 |
agaactgcacgtagtgttatctattgcgaacttctctctg |
240 |
Q |
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| T |
9090886 |
agaactgcacgtagtgttatctattgcgaacttctctctg |
9090925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 63 - 198
Target Start/End: Original strand, 9095094 - 9095229
Alignment:
| Q |
63 |
aattgaccacttttgttgtgcagttcacttttgggcacctgcatttaagtggggtatcaccgttgccaatgttgctgattttacaaaaccaactgagaag |
162 |
Q |
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|||||||||||| | ||||||||||||||||||||| ||| |||||||||||||||||| | |||||||| ||||||||||| |||||||| |||||||| |
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| T |
9095094 |
aattgaccacttattttgtgcagttcacttttgggcccctacatttaagtggggtatcagcattgccaatattgctgattttgcaaaaccacctgagaag |
9095193 |
T |
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| Q |
163 |
atttcctatcctcatcaaataagtatgtgcatgcat |
198 |
Q |
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| T |
9095194 |
ctttcctatcctcaacaaataggtatgcgcatgcat |
9095229 |
T |
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