View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8811_low_2 (Length: 446)
Name: NF8811_low_2
Description: NF8811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8811_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 27112626 - 27112195
Alignment:
| Q |
1 |
cgatatcggcatatcagtattcatgtcgtgtccgatgtccatgtccgtatctggactccataggtctatatcataaaggttacatagtagaacgaattag |
100 |
Q |
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||||||| |||| ||||||| |||||| |||||||||||| |||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
27112626 |
cgatatcagcatgtcagtatccatgtcctgtccgatgtccgtgtccgtatccggattccataggtctatatcataaaggttatatagtagaacgaattag |
27112527 |
T |
|
| Q |
101 |
aataaactgtgacctatgacacaaacttaattaattcaaattgacaaattttatgtggttgcagtaggattggcggttaaggtaatagatgaagtgatga |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
27112526 |
aataaactctgacctatgacacaaacttaattaattcaaatagacaatttttatgtggttgcagtaggattggcgggtaaggtaatagatgaagtgatga |
27112427 |
T |
|
| Q |
201 |
aagcaccacatgaaccgtccatattatttccaagaagtggtggaaatattcattcttttagagcgttgactccatgtgcaatactagatgtgctgtctcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27112426 |
aagcaccacatgaaccgtccatattatttccaagaagtggtggaaatattcattcttttagagcgttgactccatgtgcaatactagatgtgctgtctcc |
27112327 |
T |
|
| Q |
301 |
accatactctgaagattttggaagaccctccacttactactatgacattcctatcccttatcttaatggtataatttcattctgtaccttctaattaatt |
400 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
27112326 |
accatactgtgaagattttggaagaccctccacttactactatgacattcctatcccttatcttaatggtataatttcattttgtaccttctcattaatt |
27112227 |
T |
|
| Q |
401 |
accctattcattcatttatgcatcatgtttttca |
434 |
Q |
| |
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| || |||||||||||||||||||||||||||| |
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| T |
27112226 |
a--ctcttcattcatttatgcatcatgtttttca |
27112195 |
T |
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