View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8811_low_3 (Length: 427)
Name: NF8811_low_3
Description: NF8811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8811_low_3 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 17 - 427
Target Start/End: Complemental strand, 44722217 - 44721807
Alignment:
| Q |
17 |
aaaaatccattgatgctatgcctgacttcatagactgaaccaaggttcacaagatatgtttttctgcactattatcgaacactccaactaccagatatat |
116 |
Q |
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| T |
44722217 |
aaaaatccattgaagttatgcctgacttcatagactgaaccaaggttcacaagatatgtttttctgcactattatcgaacactcaaactaccagatatat |
44722118 |
T |
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| Q |
117 |
acctatttgatttggaaacctaaatttcaaggtttatattcataaaaagaaatttaagacctagcaccgcaatgccatagagcataatcacttggtgatt |
216 |
Q |
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| T |
44722117 |
acctatttgatttggaaacctaaatttcaaggtttatatacataaaaagaaatttaagacctcgcaccgcaatgccatagagcataatgacttggtaatt |
44722018 |
T |
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| Q |
217 |
tgcagactaatcatatgaacattcaaaaacttcttctcctttaaagaaagctttttatgatttctattccgacaagtactctcaataaaacaagtggata |
316 |
Q |
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| T |
44722017 |
tgcagactaatcatatgaacattcaaaaacttcttcccctttaaagaaagctttttatgatttctattccgacaagtactctcaataaaacaagtggata |
44721918 |
T |
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| Q |
317 |
cttacaacagctagtttacgttcaaatttttcataacccgctatttgatgattgatatttagtttttaaattaggattgactttattaaagttcaattta |
416 |
Q |
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| T |
44721917 |
cttacaacagctagtttacgttcaaatttttcataacccgctgtttgatgattgatatgtagtttttaaattaggattgactttattaaagttcaattta |
44721818 |
T |
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| Q |
417 |
ggatgtcattg |
427 |
Q |
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| T |
44721817 |
ggatgtcattg |
44721807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 43952142 - 43951944
Alignment:
| Q |
17 |
aaaaatccattgatgctatgcctgacttca-tagactgaaccaaggttcacaagatatgtttttctgcactattatcgaaca--------ctccaactac |
107 |
Q |
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| T |
43952142 |
aaaaatcccttgacgtcatgcctgacttcaatagactgaaccaaggttcataagatatgtttttctgcaccattaccaaacagccctacactccaactaa |
43952043 |
T |
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| Q |
108 |
cagatatatacctatttgatttggaaacctaaatttcaaggtttatattcataaaaagaaatttaagacctagcaccgcaatgccatagagcataatcac |
207 |
Q |
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| T |
43952042 |
tagatatt---ctatttgatttggaaacctaaatttcaaggttcagatatataaaaagaaatttaagttctagcatcacaatgccaaagaccataatgac |
43951946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 216 - 308
Target Start/End: Complemental strand, 43951897 - 43951808
Alignment:
| Q |
216 |
ttgcagactaatcatatgaacattcaaaaacttcttctcctttaaagaaagctttttatgatttctattccgacaagtactctcaataaaaca |
308 |
Q |
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| T |
43951897 |
ttgcatactaattatatgaacattaaaaaacttcc---ccttgaaaggaaactgtttatgatttctattccaacaagtgctctcaataaaaca |
43951808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 347
Target Start/End: Complemental strand, 43951777 - 43951731
Alignment:
| Q |
301 |
ataaaacaagtggatacttacaacagctagtttacgttcaaattttt |
347 |
Q |
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| T |
43951777 |
ataaaacaagtagatacttacaacagctggtttacgttcaatttttt |
43951731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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