View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8811_low_5 (Length: 356)
Name: NF8811_low_5
Description: NF8811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8811_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 39952224 - 39952548
Alignment:
| Q |
18 |
attaatttgatgacatttatgaggtgatagatgaatcagaaaacatgctatgggagaatattttgctgatggtcatacaatttcatccactaagaaagca |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39952224 |
attaatttgatgacatttatgaggtgatagatgaatcagaaaacatgctatgggagaatattttgctgatggtcatataatttcatccactaagaaagca |
39952323 |
T |
|
| Q |
118 |
nnnnnnnnnnnnnnnnnnnnnnnnnccatcgaaggatcaagatgtttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggt |
217 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39952324 |
tttttcgttttattttgctctttttccattgaaggatcaagatgtttcactataacgggtcattgtacttcaagcagatgtttgacaagttataccaggt |
39952423 |
T |
|
| Q |
218 |
cagtagtatctcgaactcttgctgattattgtttttgtatatcctttccgcagatgtcaatggatatggtgtgagtagattgaactctggttttgttggt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39952424 |
cagtagtatctcgaactcttgctgattattgtttttgtatatcctttccgcagatgtcaatggatatggtgtgagtagattgaactctggttttgttggt |
39952523 |
T |
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| Q |
318 |
gctctaatttcgctaatcacttcat |
342 |
Q |
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||| ||||||||||||||||||||| |
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| T |
39952524 |
gctttaatttcgctaatcacttcat |
39952548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 148; Significance: 5e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 30339560 - 30339802
Alignment:
| Q |
18 |
attaatttgatgacatttatgaggtgatagatgaatcagaaaacatgctatgggagaatattttgctgatggtcatacaatttcatccactaagaaagca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30339560 |
attaatttgatgacatttatgaggtgatagatgaatcagaaaacatgctatgggagaatattttgctgatggtcatacaatttcatccactaagaaagca |
30339659 |
T |
|
| Q |
118 |
nnnnnnnnnnnnnnnnnnnnnnnnnccatcgaaggatcaagatgtttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggt |
217 |
Q |
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|||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30339660 |
tttttcatttgattttgttctttttccattgaaggatcaagttttttcactataatgggtcattgtacttcaagcagatgtttgacaagttataacaggt |
30339759 |
T |
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| Q |
218 |
cagtagtatctcgaactcttgctgattattgtttttgtatatc |
260 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| |
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| T |
30339760 |
cagtagtatctcaaactcttgctgattattgtttttgtatatc |
30339802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 143 - 276
Target Start/End: Original strand, 37221990 - 37222123
Alignment:
| Q |
143 |
ccatcgaaggatcaagatgtttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctga |
242 |
Q |
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|||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37221990 |
ccattgaaagatcaagatttttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctga |
37222089 |
T |
|
| Q |
243 |
ttattgtttttgtatatcctttccgcagatgtca |
276 |
Q |
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| T |
37222090 |
taattgtttttgtatatccttttcgcagatgtca |
37222123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 143 - 264
Target Start/End: Complemental strand, 34230240 - 34230119
Alignment:
| Q |
143 |
ccatcgaaggatcaagatgtttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctga |
242 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34230240 |
ccattgaaggatcaagatttttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctga |
34230141 |
T |
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| Q |
243 |
ttattgtttttgtatatccttt |
264 |
Q |
| |
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|||||||||||||| ||||||| |
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| T |
34230140 |
ttattgtttttgtacatccttt |
34230119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 34230332 - 34230259
Alignment:
| Q |
23 |
tttgatgacatttatgaggtgatagatgaatcagaaaacatgctatgggagaatattttgctgatggtcataca |
96 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
34230332 |
tttgatgacatttatgaggtgatagatgaatcagaaaacatactataggagaatattttgctgatggtcataca |
34230259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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