View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8811_low_6 (Length: 342)

Name: NF8811_low_6
Description: NF8811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8811_low_6
NF8811_low_6
[»] chr1 (5 HSPs)
chr1 (10-194)||(50354532-50354711)
chr1 (95-194)||(51778023-51778122)
chr1 (219-281)||(50354442-50354504)
chr1 (219-281)||(51778149-51778211)
chr1 (28-74)||(51777961-51778007)
[»] chr7 (2 HSPs)
chr7 (10-194)||(46813778-46813957)
chr7 (219-281)||(46813688-46813750)


Alignment Details
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 10 - 194
Target Start/End: Complemental strand, 50354711 - 50354532
Alignment:
Q  10 gtttggtgttattttaatttaaggtatccatgttgttgttcttggtgctattttgtgttgaatccnnnnnnnnnnnnnnnnnctggtgttttctggatac 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   ||||||||||||||||    
T  50354711 gtttggtgttattttaatttaaggtatccatgttgttgttcttggtgctattttgtgttgaatccttttttttttcttc-----ggtgttttctggatac 50354617  T
Q  110 attaaacaaaatgtttggtgttatttctttttcatttaatgtatccttttcccaaattaatcgtttataattttgtgttgaatcc 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  50354616 attaaacaaaatgtttggtgttatttctttttcatttaatgtatccttttcccagattaatcgtttataattttttgttgaatcc 50354532  T

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Target: chr1; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 95 - 194
Target Start/End: Original strand, 51778023 - 51778122
Alignment:
Q  95 gtgttttctggatacattaaacaaaatgtttggtgttatttctttttcatttaatgtatccttttcccaaattaatcgtttataattttgtgttgaatcc 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  51778023 gtgttttctggatacattaaacaaaatgtttggtgttatttctttttcatttaatgtatccttttcccaaattaatcgtttataattttgagttgaatcc 51778122  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 219 - 281
Target Start/End: Complemental strand, 50354504 - 50354442
Alignment:
Q  219 aatatccatgctttcataggagttcatccatggtgttcatgaagttcatgttcttctaaatta 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  50354504 aatatccatgctttcataggagttcatccatggtgttcatgaagttcatcttcttctaaatta 50354442  T

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Target: chr1; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 219 - 281
Target Start/End: Original strand, 51778149 - 51778211
Alignment:
Q  219 aatatccatgctttcataggagttcatccatggtgttcatgaagttcatgttcttctaaatta 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  51778149 aatatccatgctttcataggagttcatccatggtgttcatgaagttcatcttcttctaaatta 51778211  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 51777961 - 51778007
Alignment:
Q  28 ttaaggtatccatgttgttgttcttggtgctattttgtgttgaatcc 74  Q
    |||||| |||||| |||||||| ||||||||||||||||||||||||    
T  51777961 ttaaggcatccattttgttgtttttggtgctattttgtgttgaatcc 51778007  T

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Target: chr7 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 10 - 194
Target Start/End: Complemental strand, 46813957 - 46813778
Alignment:
Q  10 gtttggtgttattttaatttaaggtatccatgttgttgttcttggtgctattttgtgttgaatccnnnnnnnnnnnnnnnnnctggtgttttctggatac 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   ||||||||||||||||    
T  46813957 gtttggtgttattttaatttaaggtatccatgttgttgttcttggtgctattttgtgttgaatccttttttttttcttc-----ggtgttttctggatac 46813863  T
Q  110 attaaacaaaatgtttggtgttatttctttttcatttaatgtatccttttcccaaattaatcgtttataattttgtgttgaatcc 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||    
T  46813862 attaaacaaaatgtttggtgttatttctttttcatttaatgtatccttttcccagattaatcatttataattttttgttgaatcc 46813778  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 219 - 281
Target Start/End: Complemental strand, 46813750 - 46813688
Alignment:
Q  219 aatatccatgctttcataggagttcatccatggtgttcatgaagttcatgttcttctaaatta 281  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  46813750 aatatccatgctttcattggagttcatccatggtgttcatgaagttcatcttcttctaaatta 46813688  T

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