View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8811_low_7 (Length: 338)
Name: NF8811_low_7
Description: NF8811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8811_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 327924 - 327610
Alignment:
| Q |
18 |
gtttataacgagagtgggaagtatagtaacatctccacggctaccctgtccaatctaaaaccaacgtagaagcaaaatacaataactatcacataactac |
117 |
Q |
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| T |
327924 |
gtttataacgagagtgggaagtatagtaacatctccacggctaccctgtccaatctaaaaccaacatagaagcaaaatacaataactatcacataactac |
327825 |
T |
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| Q |
118 |
agaaaagtttaataaccatcacaagtttccttctagaagaccaacctgtgcatcctgttcagctttaagaacgggattttcagcattcgcattaggatcc |
217 |
Q |
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| T |
327824 |
agaaaagtttaataaccatcacaagtttccttctagaagaccaacctgtgcatcctgttcagctttaagaacgggattttcagcattcgcattaggatcc |
327725 |
T |
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| Q |
218 |
ccagtacagtccttaatcttattcaaattaacacctacatcaagtaaatcagttaagatcgaacaactatgttatgttttgttaagaaattcagacataa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
327724 |
ccagtacagtccttaatcttattcaaattaacacctacatcaagtaaatcagttaagatcgaacaactatgttatgttttgttaagaaattcagacataa |
327625 |
T |
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| Q |
318 |
tcagacaccaccaaa |
332 |
Q |
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| T |
327624 |
tcagacaccaccaaa |
327610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 253
Target Start/End: Original strand, 27412888 - 27412984
Alignment:
| Q |
157 |
accaacctgtgcatcctgttcagctttaagaacgggattttcagcattcgcattaggatccccagtacagtccttaatcttattcaaattaacacct |
253 |
Q |
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| T |
27412888 |
accaacctgtgcttcctgttcggctttgagaacagggttttcaacatcggcaagaggatctccaacacagtctttaatcttcttcagatcaacacct |
27412984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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