View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8811_low_8 (Length: 331)
Name: NF8811_low_8
Description: NF8811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8811_low_8 |
 | |
|
| [»] scaffold0172 (1 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0655 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0172 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 4 - 312
Target Start/End: Complemental strand, 34702 - 34392
Alignment:
| Q |
4 |
tttttaaatgaaggattatgtgttttatatttatgttgtgataattattttggtggtgttgttttggcatgaatatcatgtgttattattgtgtggtgtt |
103 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34702 |
ttttgaaatgaaggattatgtgttttatatttgtgttgtgataattattttggtggtgttgttttggcatgaatatcatgtgttattattgtgttgtgtt |
34603 |
T |
|
| Q |
104 |
gttttaacatgaatactannnnnnnn-atgggtgaataacaagtaactataatggtgattcaaaactatatccaaaggtgagatactcgacttttgtttt |
202 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
34602 |
gttttaacatgaatactatttttttttatgggtgaataacaagtaactataatggtgattcaaaactatatccaaaggtgggatactagacttttgtttt |
34503 |
T |
|
| Q |
203 |
ta-ggagattacccaacggtggggtatttaaagagacattcatgcattagatgactcagacaaatgtccaatggtggggcagtgaccatcgagttttagg |
301 |
Q |
| |
|
|| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| |
|
|
| T |
34502 |
taaggagattatccaacggtggggtatttaaggagacattcatgcattagatgactcagacaaatgcgcaatgatggggcactgaccatcgagttttagg |
34403 |
T |
|
| Q |
302 |
agttactaccc |
312 |
Q |
| |
|
||||||||||| |
|
|
| T |
34402 |
agttactaccc |
34392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 3 - 312
Target Start/End: Complemental strand, 29963109 - 29962803
Alignment:
| Q |
3 |
gtttttaaatgaaggattatgtgttttatatttatgttgtgataattattttggtggtgttgttttggcatgaatatcatgtgttattattgtgtggtgt |
102 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
29963109 |
gttttgaaatgaaggattatgtgttttatatttgtgttgtgataattattttggtggtgttgttttggcatgaatatcatgtgttatt---gtgtgatgt |
29963013 |
T |
|
| Q |
103 |
tgttttaacatgaatactannnnnnnnatgggtgaataacaagtaactataatggtgattcaaaactatatccaaaggtgagatactcgacttttgtttt |
202 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
29963012 |
tgttttaacatgaatactatttttttttatggtgaataacaattaactataatggtgattcaaaactatatccaaaggtgggatactagacttttgtttt |
29962913 |
T |
|
| Q |
203 |
taggagattacccaacggtggggtatttaaagagacattcatgcattagatgactcagacaaatgtccaatggtggggcagtgaccatcgagttttagga |
302 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| || |||||||| |
|
|
| T |
29962912 |
tatgagattacccaacggtggggtatttaaggagacattcatgcattagatgactcagacaaatgcccaatggtagggcactgaccattgaattttagga |
29962813 |
T |
|
| Q |
303 |
gttactaccc |
312 |
Q |
| |
|
|||||||||| |
|
|
| T |
29962812 |
gttactaccc |
29962803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 3 - 312
Target Start/End: Original strand, 2039019 - 2039326
Alignment:
| Q |
3 |
gtttttaaatgaaggattatgtgttttatatttatgttgtgataattattttggtggtgttgttttggcatgaatatcatgtgttattattgtgtggtgt |
102 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2039019 |
gttttgaaatgaaggattatgtgttttatatttgtgttatgataattattttggtggtgttgttttgacatgaatatcatgtgttattattgtgtggtgc |
2039118 |
T |
|
| Q |
103 |
tgttttaacatgaatactannnnnnnnatgggtgaataacaagtaactataatggtgattcaaaactatatccaaaggtgagatactcgacttttgtttt |
202 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||| ||| |
|
|
| T |
2039119 |
tcttttaacatgaatactattttttttatgggtgaataacaagtaactataatggtgattcaaaactatatccaaaggtgggatactaga--tttaattt |
2039216 |
T |
|
| Q |
203 |
taggagattacccaacggtggggtatttaaagagacattcatgcattagatgactcagacaaatgtccaatggtggggcagtgaccatcgagttttagga |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||| || |||| || ||||||||||| |
|
|
| T |
2039217 |
taggagattacccaacggtggggtatttaaggagacattcatgcattagttgactcagacaaatgcccaatggtgggacactgactattgagttttagga |
2039316 |
T |
|
| Q |
303 |
gttactaccc |
312 |
Q |
| |
|
|||||||||| |
|
|
| T |
2039317 |
gttactaccc |
2039326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 2 - 312
Target Start/End: Complemental strand, 3897355 - 3897043
Alignment:
| Q |
2 |
tgtttttaaatgaaggattatgtgttttatatttatgttgtgataattattttggtggtgttgttttggcatgaatatcatgtgttattatt-gtgtggt |
100 |
Q |
| |
|
|||||| ||||||| || |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3897355 |
tgttttgaaatgaatgactatgtgttacatatttgtgttgtgataattattttggtggtgttgttttggcatgaatatcatgtgttattatttgtgtggt |
3897256 |
T |
|
| Q |
101 |
gttgttttaacatgaatactannnnnnnna-tgggtgaataacaagtaactataatggtgattcaaaactatatccaaaggtgagatactcgacttttgt |
199 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3897255 |
gttgttttaacatgaatactattttttttaatgggtgaataacaagtaactataatggtgattcaaaactatatccaaaggtgagatactagacttttga |
3897156 |
T |
|
| Q |
200 |
ttttaggagattacccaacggtggggtatttaaagagacattcatgcattagatgactcagacaaatgtccaatggtggggcagtgaccatcgagtttta |
299 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||| || |||| ||||||||||| |
|
|
| T |
3897155 |
ttttaggagattacccaacagtggggtatttaaggagacattcatgcattagatgactcagacagatgcccaatggtgggacattgacaatcgagtttta |
3897056 |
T |
|
| Q |
300 |
ggagttactaccc |
312 |
Q |
| |
|
||||||||||| |
|
|
| T |
3897055 |
aaagttactaccc |
3897043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 44668911 - 44669207
Alignment:
| Q |
19 |
ttatgtgttttatatttatgttgtgataattattttggtggtgttgttttggcatgaatatcatgtgttattattg-tgtggtgttgttttaacatgaat |
117 |
Q |
| |
|
||||||| | |||||| || |||||||||||| |||||| |||||||||||||||||||| |||||| |||||| |||||||||||||||| | ||| |
|
|
| T |
44668911 |
ttatgtgctatatattggtgatgtgataattatcttggtgttgttgttttggcatgaatattatgtgt-attatttatgtggtgttgttttaatgtaaat |
44669009 |
T |
|
| Q |
118 |
actannnnnnnnatgggtgaataac---aagtaactataatggtgattcaaaactatatccaaaggtgagatactcgacttttg-tttttaggagattac |
213 |
Q |
| |
|
|||| ||||||||||||| || |||||| ||||||||||||||| |||||||||||||| |||| | |||||||| ||||| ||||||||| |
|
|
| T |
44669010 |
actatttgttt-atgggtgaataaccttaactaactaaaatggtgattcaaaattatatccaaaggtgggatattagacttttgattttttggagattac |
44669108 |
T |
|
| Q |
214 |
ccaacggtggggtatttaaagagacattcatgcattagatgactcagacaaatgtccaatggtggggcagtgaccatcgagttttaggagttactaccc |
312 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
44669109 |
ccaacggaggggtatttacggagacattcatgcattagatgactcagacaaatgcccaatggtggggcactgaccatcgagttttaggagttactaccc |
44669207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 2 - 312
Target Start/End: Complemental strand, 5537146 - 5536834
Alignment:
| Q |
2 |
tgtttttaaatgaaggattatgtgttttatatttatgttgtgataattattttggtggtgttgttttggcatgaatatcatgtgttattatt-gtgtggt |
100 |
Q |
| |
|
|||||| ||||||| ||||||||||| |||| | ||||||||||||||| |||||||| ||| ||||| |||||||| ||||||||||||| ||||||| |
|
|
| T |
5537146 |
tgttttgaaatgaatgattatgtgttatatagtggtgttgtgataattatcttggtggt-ttgctttggtatgaatattatgtgttattatttgtgtggt |
5537048 |
T |
|
| Q |
101 |
gttgttttaacatgaatactannnnnnnnatgggtgaataac---aagtaactataatggtgattcaaaactatatccaaaggtgagatactcgactttt |
197 |
Q |
| |
|
||| |||||| || |||||| |||| || ||||| ||||||||| ||||||||||| ||||||||||||| | || |||||| ||| | |
|
|
| T |
5537047 |
gttattttaaaataaatact-ctttgtttatggatgcataaccttaagtaacta-aatggtgattctaaactatatccaacgctgggatactagaccta- |
5536951 |
T |
|
| Q |
198 |
gtttttaggag--attacccaacggtggggtatttaaagagacattcatgcattagatgactcagacaaatgtccaatggtggggcagtgaccatcgagt |
295 |
Q |
| |
|
| ||| ||||| |||| |||| |||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||| | ||| |||||||| |
|
|
| T |
5536950 |
gatttaaggagttattatccaatggtgaggtatttacggagacattcatgcattagatgactcagacaaatgcccaatggtggggtactgaacatcgagt |
5536851 |
T |
|
| Q |
296 |
tttaggagttactaccc |
312 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
5536850 |
tttaggagttattaccc |
5536834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 143 - 312
Target Start/End: Original strand, 6818700 - 6818871
Alignment:
| Q |
143 |
aagtaactataatggtgattcaaaactatatccaaaggtgagatactcgacttttgtttttaggag--attacccaacggtggggtatttaaagagacat |
240 |
Q |
| |
|
||||||||| | |||||||| ||||||||||||||||||| |||||| |||||| | || ||||| ||||||||| ||||||||||||| ||||||| |
|
|
| T |
6818700 |
aagtaactaaattggtgatttaaaactatatccaaaggtgggatactagactttagagttgaggagttattacccaatggtggggtatttatggagacat |
6818799 |
T |
|
| Q |
241 |
tcatgcattagatgactcagacaaatgtccaatggtggggcagtgaccatcgagttttaggagttactaccc |
312 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||||| | || ||||||||||||||||||| ||||| |
|
|
| T |
6818800 |
ttatgcattagatgactcagactgatgtccaatggtggggtaccgaacatcgagttttaggagttattaccc |
6818871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 6818608 - 6818690
Alignment:
| Q |
37 |
tgttgtgataattat-tttggtggtgttgttttggcatgaatatcatgtgttatta-ttgtgtggtgttgttttaacatgaata |
118 |
Q |
| |
|
||||||||||||||| ||||||||| |||| ||||||||| ||| ||||||||||| |||| ||||||||||||||||| |||| |
|
|
| T |
6818608 |
tgttgtgataattatatttggtggttttgtcttggcatgattat-atgtgttattaattgtctggtgttgttttaacataaata |
6818690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 3897381 - 3897349
Alignment:
| Q |
37 |
tgttgtgataattattttggtggtgttgttttg |
69 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
3897381 |
tgttgtgataattattttggtggtgttgttttg |
3897349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 20 - 312
Target Start/End: Original strand, 10392 - 10685
Alignment:
| Q |
20 |
tatgtgttttatatttatgttgtgataattattttggtggtgttgttttggcatgaatatcatgtgttattattgt-gtggtgttgttttaacatgaata |
118 |
Q |
| |
|
|||||||| |||||| || |||||||||||| ||||||||||||||||||||||||||| |||| ||||||| | ||||||||||||||| | |||| |
|
|
| T |
10392 |
tatgtgttatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgt--tattatttttgtggtgttgttttaatgtaaata |
10489 |
T |
|
| Q |
119 |
ctannnnnnnnatgggtgaataac---aagtaactataatggtgattcaaaactatatccaaaggtgagatactcgacttttgtttttaggagattaccc |
215 |
Q |
| |
|
||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||| | |||||||| |||| ||||||||||| |
|
|
| T |
10490 |
ctatttgttt-atgggtgaataaacttaagtaactaaaatggtgattcaaaactatatccaaaggtgggatattagacttttgatttttggagattaccc |
10588 |
T |
|
| Q |
216 |
aacggtggggtatttaaagagacattcatgcattagatgactcagacaaatgtccaatggtggggcagtgaccatcgagttttaggagttactaccc |
312 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10589 |
aacggtggggtatttacggagacattcatgcattagatgactcagacaaatgtccaatggtggggcactgaccatcgagttttaggagttactaccc |
10685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 155; Significance: 3e-82; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 20 - 312
Target Start/End: Original strand, 16421680 - 16421973
Alignment:
| Q |
20 |
tatgtgttttatatttatgttgtgataattattttggtggtgttgttttggcatgaatatcatgtgttattattgt-gtggtgttgttttaacatgaata |
118 |
Q |
| |
|
|||||||| |||||| || |||||||||||| ||||||||||||||||||||||||||| |||| ||||||| | ||||||||||||||| | |||| |
|
|
| T |
16421680 |
tatgtgttatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgt--tattatttttgtggtgttgttttaatgtaaata |
16421777 |
T |
|
| Q |
119 |
ctannnnnnnnatgggtgaataac---aagtaactataatggtgattcaaaactatatccaaaggtgagatactcgacttttgtttttaggagattaccc |
215 |
Q |
| |
|
||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||| | |||||||| |||| ||||||||||| |
|
|
| T |
16421778 |
ctatttgttt-atgggtgaataaacttaagtaactaaaatggtgattcaaaactatatccaaaggtgggatattagacttttgatttttggagattaccc |
16421876 |
T |
|
| Q |
216 |
aacggtggggtatttaaagagacattcatgcattagatgactcagacaaatgtccaatggtggggcagtgaccatcgagttttaggagttactaccc |
312 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
16421877 |
aacggtggggtatttacggagacattcatgcattagatgactcagacaaatgtccaatggtggggcactgaccatcgagttttaggagttactaccc |
16421973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 45 - 312
Target Start/End: Complemental strand, 48186667 - 48186398
Alignment:
| Q |
45 |
taattattttggtggtgttgttttggcatgaatatcatgtgttattattgt-gtggtgttgttttaacatgaatactannnnnnnnatgggtgaataac- |
142 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||| |||||| |||||| | ||||||||||||| | | ||||||| ||||||||||||| |
|
|
| T |
48186667 |
taattatcttggtgttgttgttttggcatgaatattatgtgt-attatttttgtggtgttgttttcatgtaaatactatttgttt-atgggtgaataacc |
48186570 |
T |
|
| Q |
143 |
--aagtaactataatggtgattcaaaactatatccaaaggtgagatactcgacttttgtttttaggagattacccaacggtggggtatttaaagagacat |
240 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||| | || | |||||||| ||||||||| ||| |||||||||||||||||| |||| || |
|
|
| T |
48186569 |
ttaagtaactaaaatggtgattcaaaactatatccaatggtggggtattagacttttgattttaggagtttatccaacggtggggtatttacggagatat |
48186470 |
T |
|
| Q |
241 |
tcatgcattagatgactcagacaaatgtccaatggtggggcagtgaccatcgagttttaggagttactaccc |
312 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
48186469 |
tcatgcattagatgactcagacaaatgcccaatggtggggcactgaccatcgagttttaggagttactaccc |
48186398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 40 - 312
Target Start/End: Complemental strand, 21268229 - 21267957
Alignment:
| Q |
40 |
tgtgataattattttggtggtgttgttttggcatgaatatcatgtgttattattg-tgtggtgttgttttaacatgaatactannnnnnnnatgggtgaa |
138 |
Q |
| |
|
|||||||||||| |||||| ||||||||| |||||||||| ||| || |||||| ||||||||||||| || || |||| || ||||||||| |
|
|
| T |
21268229 |
tgtgataattatcttggtgatgttgtttttgcatgaatattatgggt-attatttatgtggtgttgttt-aatataaatattatttgttt-atgggtgaa |
21268133 |
T |
|
| Q |
139 |
taac---aagtaactataatggtgattcaaaactatatccaaaggtgagatactcgacttttgtttttaggagattacccaacggtggggtatttaaaga |
235 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||| |||| |||| | |||||||| ||||||||| |||||||||||||||||||||| || |
|
|
| T |
21268132 |
taaccttaagtaactaaaatggtgattcaaaactatatccaatggtgggatattagacttttgattttaggag-ttacccaacggtggggtatttacgga |
21268034 |
T |
|
| Q |
236 |
gacattcatgcattagatgactcagacaaatgtccaatggtggggcagtgaccatcgagttttaggagttactaccc |
312 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| |||| |||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
21268033 |
gatattcatgcattagatgactcagacaaatgcccaacggtgtggcactgaccatcgagttttaggagttactaccc |
21267957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 2 - 312
Target Start/End: Original strand, 28384085 - 28384395
Alignment:
| Q |
2 |
tgtttttaaatgaaggattatgtgttttatatttatgttgtgataattattttggtggtgttgttttggcatgaatatcatgtgttattattgtgt-ggt |
100 |
Q |
| |
|
|||||| ||||||| | ||||||||| |||||| || |||| |||||| || |||||||||||||||||||||| || |||||| |||||| | | ||| |
|
|
| T |
28384085 |
tgttttgaaatgaatg-ttatgtgttatatattcgtggtgtggtaattactt-ggtggtgttgttttggcatgaacattatgtgt-attatttttttggt |
28384181 |
T |
|
| Q |
101 |
gttgttttaacatgaatactannnnnnnnatgggtgaataac---aagtaactataatggtgattcaaaactatatccaaaggtgagatactcgactttt |
197 |
Q |
| |
|
||||||||||||| ||||||| |||| | |||||| ||| ||||| |||||| ||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
28384182 |
gttgttttaacataaatactatttgttt-atggataaataaccttaagcaactaaaatggtaattcaaaactatatccaaaggtgggatactaaactttt |
28384280 |
T |
|
| Q |
198 |
gtttttaggagattacccaacggtggggtatttaaagagacattcatgcattagatgactcagacaaatgtccaatggtggggcagtgaccatcgagttt |
297 |
Q |
| |
|
| |||||||| ||||||||||||||| ||||||| || || |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
28384281 |
gattttaggaaattacccaacggtggagtatttacggatactttcatgcattagatgactcagacaaatgcccaatggtggggcactgaccatcgagttt |
28384380 |
T |
|
| Q |
298 |
taggagttactaccc |
312 |
Q |
| |
|
||||| ||| ||||| |
|
|
| T |
28384381 |
taggatttattaccc |
28384395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 51 - 312
Target Start/End: Original strand, 28393048 - 28393311
Alignment:
| Q |
51 |
ttttggtggtgttgttttggcatgaatatcatgtgttattattgt-gtggtgttgttttaacatgaatactannnnnnnnatgggtgaataac---aagt |
146 |
Q |
| |
|
|||| |||||| |||||||||||||| || |||||| |||||| | |||||||||||||||||| ||||||| |||||| |||||| || |
|
|
| T |
28393048 |
tttttgtggtggtgttttggcatgaacattatgtgt-attattttagtggtgttgttttaacataaatactatttgttt-atgggtaaataaccttaaac |
28393145 |
T |
|
| Q |
147 |
aactataatggtgattcaaaactatatccaaaggtgagatactcgacttttgtttttaggagattacccaacggtggggtatttaaagagacattcatgc |
246 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||| |||||| ||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
28393146 |
aactaaaattgtgattcaaaactatatccaaaggtgggatactaaacttttgattttatgagattacccaacggtggggtatttacggagactttcatgc |
28393245 |
T |
|
| Q |
247 |
attagatgactcagacaaatgtccaatggtggggcagtgaccatcgagttttaggagttactaccc |
312 |
Q |
| |
|
||||||||||||| | ||||| |||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
28393246 |
attagatgactcaaataaatgcccaatggtggggcactgaccatcgagttttaggagttattaccc |
28393311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 143 - 312
Target Start/End: Original strand, 16484116 - 16484283
Alignment:
| Q |
143 |
aagtaactataatggtgattcaaaactatatccaaaggtgagatactcgacttttgtttttaggagattacccaacggtggggtatttaaagagacattc |
242 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||| || |||| | |||||||| |||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
16484116 |
aagtaactaaaatggcgattcaaaactatatccaaagatgggatattagacttttgattttaggagattaccc--cggtggggtatttacggagacattc |
16484213 |
T |
|
| Q |
243 |
atgcattagatgactcagacaaatgtccaatggtggggcagtgaccatcgagttttaggagttactaccc |
312 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| ||| || |||||||||||||||||||||| |
|
|
| T |
16484214 |
atgcattagatgactcagacaaatgcccaatggtggggcactgatcaccgagttttaggagttactaccc |
16484283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 2 - 312
Target Start/End: Original strand, 36017959 - 36018272
Alignment:
| Q |
2 |
tgtttttaaatgaaggattatgtgttttatatttatgttgtgataattattttggtggtgttgttttggcatgaatatc-atgtgttattatt-gtgtgg |
99 |
Q |
| |
|
|||||| ||||||| ||||||||||| |||||| ||||||||||||||| |||||||| ||| |||| |||||||| ||||||||||||| |||||| |
|
|
| T |
36017959 |
tgttttgaaatgaatgattatgtgttatatattggtgttgtgataattatcttggtggt-ttgctttgatatgaatatttatgtgttattatttgtgtgg |
36018057 |
T |
|
| Q |
100 |
tgttgttttaacatgaatactannnnnnnnatgggtgaataac---aagtaactataatggtgattcaaaactatatccaaaggtgagatactcgacttt |
196 |
Q |
| |
|
|||||||||||||| |||||| |||| || ||||| || |||||| |||||| |||| | |||||||||||||||| ||||| ||||| |
|
|
| T |
36018058 |
tgttgttttaacataaatact-ctttgtttatggatgcataaccttaactaacta-aatggtaattctagactatatccaaaggtggtatactagactta |
36018155 |
T |
|
| Q |
197 |
tgtttttaggag--attacccaacggtggggtatttaaagagacattcatgcattagatgactcagacaaatgtccaatggtggggcagtgaccatcgag |
294 |
Q |
| |
|
| ||| ||||| |||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| | ||| ||||||| |
|
|
| T |
36018156 |
-gatttaaggagttattattcaatggtggggtatttacagagacattcatgcattagatgactcagacaaatgtccaacggtggggtactgaacatcgag |
36018254 |
T |
|
| Q |
295 |
ttttaggagttactaccc |
312 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
36018255 |
ttttaggagttattaccc |
36018272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 9 - 312
Target Start/End: Complemental strand, 11283435 - 11283130
Alignment:
| Q |
9 |
aaatgaaggattatgtgttttatatttatgttgtgataattattttggtggtgttgttttggcatgaatatcatgtgttatta-ttgtgtggtgttgttt |
107 |
Q |
| |
|
||||||| ||||||||||| |||||| ||||||||||||||| |||||||| ||| ||||| |||||||| ||||||||||| |||||||||||| ||| |
|
|
| T |
11283435 |
aaatgaatgattatgtgttatatattggtgttgtgataattatcttggtggt-ttgctttggtatgaatattatgtgttattatttgtgtggtgttattt |
11283337 |
T |
|
| Q |
108 |
taacatgaatactannnnnnnnatgggtgaataac---aagtaactataatggtgattcaaaactatatccaaaggtgagatactcgacttttgttttta |
204 |
Q |
| |
|
|||||| |||||| |||| |||||||| ||||| ||| |||||||||| |||||||||||| |||| |||||| || ||| | || | |
|
|
| T |
11283336 |
taacataaatact-ctttgtttatggatgaataaccttaagtagcta-aatggtgatttttaactatatccaatggtgggatactaga-tttagaattaa |
11283240 |
T |
|
| Q |
205 |
ggag--attacccaacggtggggtatttaaagagacattcatgcattagatgactcagacaaatgtccaatggtggggcagtgaccatcgagttttagga |
302 |
Q |
| |
|
|||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| || | ||||||| | | | ||||||||||||||| |
|
|
| T |
11283239 |
ggagttattacccaatggtggggtatttacggagacattcatgcattagatgactcagacaaataccctacggtggggtactaaacatcgagttttagga |
11283140 |
T |
|
| Q |
303 |
gttactaccc |
312 |
Q |
| |
|
|||| ||||| |
|
|
| T |
11283139 |
gttattaccc |
11283130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 2 - 312
Target Start/End: Complemental strand, 12528776 - 12528464
Alignment:
| Q |
2 |
tgtttttaaatgaaggattatgtgttttatatttatgttgtgataattattttggtggtgttgttttggcatgaatatcatgtgttatta-ttgtgtggt |
100 |
Q |
| |
|
|||||| ||||||| ||||||||||| |||| | |||||||||||||||| |||||||| ||| ||| | |||||||| ||||||||||| ||||||||| |
|
|
| T |
12528776 |
tgttttgaaatgaatgattatgtgttatataatgatgttgtgataattatcttggtggt-ttgcttttgtatgaatattatgtgttattatttgtgtggt |
12528678 |
T |
|
| Q |
101 |
gttgttttaacatgaatactannnnnnnnatgggtgaataac---aagtaactataatggtgattcaaaactatatccaaaggtgagatactcgactttt |
197 |
Q |
| |
|
||| ||||||||| |||| | |||| || ||||| ||||||||| ||||||||||| ||||||||||||| |||| |||||| ||| || |
|
|
| T |
12528677 |
gttattttaacataaataat-ctttgtttatggatgcataaccttaagtaacta-aatggtgattctaaactatatccaacggtgggatactagac-tta |
12528581 |
T |
|
| Q |
198 |
gtttttaggag--attacccaacggtggggtatttaaagagacattcatgcattagatgactcagacaaatgtccaatggtggggcagtgaccatcgagt |
295 |
Q |
| |
|
| ||| ||||| |||||||| ||||||||||||| |||||||||||||||||||||||| ||| ||||| |||| |||||| | || |||||||| |
|
|
| T |
12528580 |
gatttaaggagttgttacccaatggtggggtatttacggagacattcatgcattagatgacttagaaaaatgcccaacagtggggtaccgaacatcgagt |
12528481 |
T |
|
| Q |
296 |
tttaggagttactaccc |
312 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
12528480 |
tttaggagttattaccc |
12528464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 209 - 312
Target Start/End: Complemental strand, 26263045 - 26262942
Alignment:
| Q |
209 |
attacccaacggtggggtatttaaagagacattcatgcattagatgactcagacaaatgtccaatggtggggcagtgaccatcgagttttaggagttact |
308 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||| | ||||| | ||| ||||||||||||||||||| | |
|
|
| T |
26263045 |
attacccaatggtggggtatttaccgagacattcatgcattagatgactcagacaaatgcccaacgctggggtactgaacatcgagttttaggagttatt |
26262946 |
T |
|
| Q |
309 |
accc |
312 |
Q |
| |
|
|||| |
|
|
| T |
26262945 |
accc |
26262942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 143 - 312
Target Start/End: Complemental strand, 12503003 - 12502834
Alignment:
| Q |
143 |
aagtaactataatggtgattcaaaactatatccaaaggtgagatactcgacttttgtttttaggagat--tacccaacggtggggtatttaaagagacat |
240 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||| |||| ||||| ||||| | ||| ||||| | ||| ||| |||| |||||||| ||||||| |
|
|
| T |
12503003 |
aagtaacta-aatggtgattctaaactatatccaacggtggaatactagactta-gatttaaggagttgttactcaatggtgaggtatttacggagacat |
12502906 |
T |
|
| Q |
241 |
tcatgcattagatgactcagacaaatgtccaatggtggggcagtgaccatcgagttttaggagttactaccc |
312 |
Q |
| |
|
||||||||||||||||||||| ||||| |||| ||||||| | ||| ||||||||||||||||||| ||||| |
|
|
| T |
12502905 |
tcatgcattagatgactcagaaaaatgcccaacggtggggtactgaacatcgagttttaggagttattaccc |
12502834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 118
Target Start/End: Original strand, 16484019 - 16484106
Alignment:
| Q |
29 |
tatatttatgttgtgataattattttggtggtgttgttttggcatgaatatcatgtgttatta-ttgtgtggtgttgttttaacatgaata |
118 |
Q |
| |
|
||||||| ||||||||||||||| |||||||| |||||| ||||||||| ||||||||||| |||| ||||||||||||||||| |||| |
|
|
| T |
16484019 |
tatatttgtgttgtgataattatcttggtggttttgtttcggcatgaat---atgtgttattatttgtctggtgttgttttaacataaata |
16484106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 306
Target Start/End: Complemental strand, 12502809 - 12502745
Alignment:
| Q |
243 |
atgcattagatgactcagacaaatgtccaatggtggggcagtgaccatcg-agttttaggagtta |
306 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||| | ||| ||||| | |||||||||||| |
|
|
| T |
12502809 |
atgcattagatgattcagaataatgtccaatggtggggtattgaacatcgaatttttaggagtta |
12502745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 28392960 - 28393043
Alignment:
| Q |
2 |
tgtttttaaatgaaggattatgtgttttatatttatgttgtgataattattttggtggtgttgttttggcatgaatatcatgtgt |
86 |
Q |
| |
|
|||||| ||||||| | ||||||||| |||||| || |||| ||||| | |||||| ||||||||||| |||||||| |||||| |
|
|
| T |
28392960 |
tgttttgaaatgaatg-ttatgtgttatatattggtggtgtggtaattctcttggtgttgttgttttggtatgaatattatgtgt |
28393043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 5e-81; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 37 - 312
Target Start/End: Original strand, 3224784 - 3225062
Alignment:
| Q |
37 |
tgttgtgataattattttggtggtgttgttttggcatgaatatcatgtgttattattg-tgtggtgttgttttaacatgaatactannnnnnnnatgggt |
135 |
Q |
| |
|
||||||||||||||| |||||| |||||||||| ||||||||| ||||||||||||| ||||||||||||||||||| |||| || |||||| |
|
|
| T |
3224784 |
tgttgtgataattatcttggtgttgttgttttgacatgaatattatgtgttattatttatgtggtgttgttttaacataaatattatttgttt-atgggt |
3224882 |
T |
|
| Q |
136 |
gaataac---aagtaactataatggtgattcaaaactatatccaaaggtgagatactcgacttttgtttttaggagattacccaacggtggggtatttaa |
232 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
3224883 |
gaataaccttaagtaactaaaatggtgattcaaaactatatccaaaggtgggatactagacttttgattttaggagattactcaacggtggggtatttac |
3224982 |
T |
|
| Q |
233 |
agagacattcatgcattagatgactcagacaaatgtccaatggtggggcagtgaccatcgagttttaggagttactaccc |
312 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
3224983 |
ggagacactcatgcattagatgactcagacaaatgcccaatggcggggcactgaccatcgagttttaggagttattaccc |
3225062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 40 - 310
Target Start/End: Original strand, 19932784 - 19933056
Alignment:
| Q |
40 |
tgtgataattattttggtggtgttgttttggcatgaatatcatgtgttattattg-tgtggtgttgttttaacatgaatactannnnnnnnatgggtgaa |
138 |
Q |
| |
|
||||||| |||| ||||||||| ||||||||||||||||| |||||| |||||| |||||||||||||||| | ||||||| ||||||||| |
|
|
| T |
19932784 |
tgtgatagttatcttggtggtggtgttttggcatgaatattatgtgt-attatttctgtggtgttgttttaatgtaaatactatttgttt-atgggtgaa |
19932881 |
T |
|
| Q |
139 |
taac---aagtaactataatggtgattcaaaactatatccaaaggtgagatactcgacttttgtttttaggagattacccaacggtggggtatttaaaga |
235 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||||||| |||| | |||||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
19932882 |
taactttaagtaactaaaatggtgattcaaaactatatccaaaggtgggatattagacttttgattttaggagattacccaacggtggggtatttacgga |
19932981 |
T |
|
| Q |
236 |
gacattcatgcattagatgactcagacaaatgtccaatggtggggcagtgaccatcgagttttaggagttactac |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
19932982 |
gacattcatgcattagatgactcagacaaatgcccaatggtggggtactgaccatcgagttttaggagttactac |
19933056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 20 - 312
Target Start/End: Original strand, 1311504 - 1311801
Alignment:
| Q |
20 |
tatgtgttttatatttatgttgtgataattattttggtggtgttgttttggcatgaatatcatgtgttattattg-tgtggtgttgttttaacatgaata |
118 |
Q |
| |
|
|||||||| |||||| || |||||||||||| ||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||| | |||| |
|
|
| T |
1311504 |
tatgtgttatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgt-attatttatgtggtgttgttttaatgtaaata |
1311602 |
T |
|
| Q |
119 |
ctannnnnnnnatgggtgaata----ac---aagtaactataatggtgattcaaaactatatccaaaggtgagatactcgacttttgtttttaggagatt |
211 |
Q |
| |
|
||| ||||||||||| || ||||||||| |||| ||||||||||||||||||||||||| |||| | |||||||| |||| ||||||| |
|
|
| T |
1311603 |
ctatttgttt-atgggtgaatatataaccttaagtaactaaaatgatgattcaaaactatatccaaaggtgggatattagacttttgatttttggagatt |
1311701 |
T |
|
| Q |
212 |
acccaacggtggggtatttaaagagacattcatgcattagatgactcagacaaatgtccaatggtggggcagtgaccatcgagttttaggagttactacc |
311 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
1311702 |
acccaa-ggtggggtatttacagagacattcatgcattagatgactcagacaaatgcccaatggtggggcattgatcatcgagttttaggagttactacc |
1311800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 2 - 312
Target Start/End: Complemental strand, 11034977 - 11034665
Alignment:
| Q |
2 |
tgtttttaaatgaaggattatgtgttttatatttatgttgtgataattattttggtggtgttgttttggcatgaatatcatgtgttattatt-gtgtggt |
100 |
Q |
| |
|
|||||| ||||||| ||||||||||| |||||| ||||||||||||||| |||||| | ||| ||||| |||||||| || |||||||||| ||||| | |
|
|
| T |
11034977 |
tgttttgaaatgaatgattatgtgttatatattggtgttgtgataattatcttggtgat-ttgctttggtatgaatattatttgttattatttgtgtgtt |
11034879 |
T |
|
| Q |
101 |
gttgttttaacatgaatactannnnnnnnatgggtgaataac---aagtaactataatggtgattcaaaactatatccaaaggtgagatactcgactttt |
197 |
Q |
| |
|
||||||||||||| |||||| |||| || ||||| | ||||||| ||||||||||| ||||||||||||| |||| |||||| |||| |
|
|
| T |
11034878 |
gttgttttaacataaatact-ctttgtttatggatgcataaccttacgtaacta-aatggtgattctaaactatatccaacggtgggatactaaactta- |
11034782 |
T |
|
| Q |
198 |
gtttttaggag--attacccaacggtggggtatttaaagagacattcatgcattagatgactcagacaaatgtccaatggtggggcagtgaccatcgagt |
295 |
Q |
| |
|
| ||| ||||| |||||| || | ||||| ||||| ||||||||||||| ||||||||||||||||||||| |||| ||||||| | ||| |||||||| |
|
|
| T |
11034781 |
gatttaaggagttattacctaatgatggggcatttacagagacattcatgtattagatgactcagacaaatgcccaacggtggggtactgaacatcgagt |
11034682 |
T |
|
| Q |
296 |
tttaggagttactaccc |
312 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
11034681 |
tttaggagttattaccc |
11034665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 135; Significance: 3e-70; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 40 - 312
Target Start/End: Original strand, 3509885 - 3510158
Alignment:
| Q |
40 |
tgtgataattattttggtggtgttgttttggcatgaatatcatgtgttattattg-tgtggtgttgttttaacatgaatactannnnnnnnatgggtgaa |
138 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||| |||| ||||||| |||||||||||||||| | ||||||| ||||||||| |
|
|
| T |
3509885 |
tgtgataattaccttggtgttgttgttttggcatgaatattatgt--tattatttatgtggtgttgttttaatgtaaatactatttgttt-atgggtgaa |
3509981 |
T |
|
| Q |
139 |
taac---aagtaactataatggtgattcaaaactatatccaaaggtgagatactcgacttttgtttttaggagattacccaacggtggggtatttaaaga |
235 |
Q |
| |
|
||| ||||||||| |||||||||||||||||||||||||||||| |||| | |||||||| |||| ||||||||||||||||||||||||||| || |
|
|
| T |
3509982 |
taaacttaagtaactaaaatggtgattcaaaactatatccaaaggtgggatattagacttttgatttttggagattacccaacggtggggtatttacgga |
3510081 |
T |
|
| Q |
236 |
gacattcatgcattagatgactcagacaaatgtccaatggtggggcagtgaccatcgagttttaggagttactaccc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
3510082 |
gacattcatgcattagatgactcagacaaatgcccaatggtggggtactgaccatcgagttttaggagttactaccc |
3510158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 40 - 312
Target Start/End: Original strand, 24540693 - 24540968
Alignment:
| Q |
40 |
tgtgataattattttggtggtgttgttttggcatgaatatcatgtgttattattg-tgtggtgttgttttaacatgaatactannnnnnnnatgggtgaa |
138 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||||| |||||| ||| |||||||||||| | |||| | |||| |||| |
|
|
| T |
24540693 |
tgtgataattatcttggtggtgttgttttggcatgaatattatgtgt-attatttatgttgtgttgttttaatgtaaataat-ctttgtttatggttgaa |
24540790 |
T |
|
| Q |
139 |
taac---aagtaactataatggtgattcaaaactatatccaaaggtgagatactcgacttttg-tttttaggagattacccaacggtggggtatttaaag |
234 |
Q |
| |
|
|||| |||||||| ||||| |||||||||||||||||||||||| |||| | |||||||| ||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
24540791 |
taaccttaagtaactgaaatggcgattcaaaactatatccaaaggtgggatattagacttttgattttttggagattacccaacggtggggtattttaag |
24540890 |
T |
|
| Q |
235 |
agacattcatgcattagatgactcagacaaatgtccaatggtggggcagtgaccatcgagttttaggagttactaccc |
312 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||| || ||||||||| |
|
|
| T |
24540891 |
agactttcatgcattagatgactcagacaaatgcccaatggtggggcactgaccatcgatttttatgatttactaccc |
24540968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 96 - 282
Target Start/End: Original strand, 15277948 - 15278136
Alignment:
| Q |
96 |
gtggtgttgttttaacatgaatactannnnnnnnatgggtgaataac---aagtaactataatggtgattcaaaactatatccaaaggtgagatactcga |
192 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||| ||| |||| |||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
15277948 |
gtggtgttgttttaacataaatactatttgttt-atgggtgaataaccttaagcaacttaaatggtgattcaaaactatatccaaaggtgggatactaga |
15278046 |
T |
|
| Q |
193 |
cttttgtttttaggagattacccaacggtggggtatttaaagagacattcatgcattagatgactcagacaaatgtccaatggtggggca |
282 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||| ||||| |
|
|
| T |
15278047 |
cttttaattttaggagattacccaacggtggggtatttacggagacattcatgcattagatgacttagacaaatgcccaatggtagggca |
15278136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 306
Target Start/End: Original strand, 21441845 - 21441915
Alignment:
| Q |
236 |
gacattcatgcattagatgactcagacaaatgtccaatggtggggcagtgaccatcgagttttaggagtta |
306 |
Q |
| |
|
||||||| ||||| ||| |||| |||||||| | |||||||||| | ||| ||||||||||||||||||| |
|
|
| T |
21441845 |
gacattcgtgcataagaggacttggacaaatgcctaatggtggggtattgaacatcgagttttaggagtta |
21441915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 6e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 40 - 311
Target Start/End: Original strand, 18902015 - 18902288
Alignment:
| Q |
40 |
tgtgataattattttggtggtgttgttttggcatgaatatcatgtgttattattg-tgtggtgttgttttaacatgaatactannnnnnnnatgggtgaa |
138 |
Q |
| |
|
||||||| |||| |||||| ||||||||| |||||||||| |||||| |||||| |||||| ||||||||| | ||||||| ||||||||| |
|
|
| T |
18902015 |
tgtgatagttatcttggtgttgttgtttttgcatgaatattatgtgt-attatttctgtggttttgttttaatgtaaatactatttgttt-atgggtgaa |
18902112 |
T |
|
| Q |
139 |
taac---aagtaactataatggtgattcaaaactatatccaaaggtgagatactcgacttttgtttttaggagattacccaacggtggggtatttaaaga |
235 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||||||| ||| | |||||||| |||||||||||||||||||| ||| ||||||| || |
|
|
| T |
18902113 |
taactttaagtaactaaaatggtgattcaaaactatatccaaaggtggtatattagacttttgattttaggagattacccaacgatggagtatttacgga |
18902212 |
T |
|
| Q |
236 |
gacattcatgcattagatgactcagacaaatgtccaatggtggggcagtgaccatcgagttttaggagttactacc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| | | |||||||||||||||||||||||||| |
|
|
| T |
18902213 |
gacattcatgcattagatgactcagacaaatgcccaatggtggggtacttaccatcgagttttaggagttactacc |
18902288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 2 - 312
Target Start/End: Original strand, 18153408 - 18153720
Alignment:
| Q |
2 |
tgtttttaaatgaaggattatgtgttttatatttatgttgtgataattattttggtggtgttgttttggcatgaatatcatgtgttattatt-gtgtggt |
100 |
Q |
| |
|
|||||| ||||||| ||||||||||| |||||| ||||||||||||||| |||||||| ||| ||||| |||||||| ||||||||||||| | ||||| |
|
|
| T |
18153408 |
tgttttgaaatgaatgattatgtgttatatattggtgttgtgataattatcttggtggt-ttgctttggtatgaatattatgtgttattatttgagtggt |
18153506 |
T |
|
| Q |
101 |
gttgttttaacatgaatactannnnnnnnatgggtgaataac---aagtaactataatggtgattcaaaactatatccaaaggtgagatactcgactttt |
197 |
Q |
| |
|
||||||||||||| |||||| |||| || ||||| ||||||||| ||||||||||| ||||||||||||| |||| |||||| ||||| |
|
|
| T |
18153507 |
gttgttttaacataaatact-ctttgtttatggatgcataaccttaagtaacta-aatggtgattctaaactatatccaatggtgggatactagactta- |
18153603 |
T |
|
| Q |
198 |
gtttttaggag--attacccaacggtggggtatttaaagagacattcatgcattagatgactcagacaaatgtccaatggtggggcagtgaccatcgagt |
295 |
Q |
| |
|
| ||| ||||| ||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||| |||| ||||||| | ||| |||||||| |
|
|
| T |
18153604 |
gatttaaggagttattacccaatggtggggtatttacggagacaatcatgcattagatgactcagacaaatgcccaacggtggggtactgaacatcgagt |
18153703 |
T |
|
| Q |
296 |
tttaggagttactaccc |
312 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
18153704 |
tttaggagttattaccc |
18153720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 40 - 312
Target Start/End: Original strand, 15418970 - 15419245
Alignment:
| Q |
40 |
tgtgataattattttggtggtgttgttttggcatgaatatcatgtgttattattg-tgtggtgttgttttaacatgaatactannnnnnnnatgggtgaa |
138 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||||| |||||| ||| |||||||||||| | |||| | |||| |||| |
|
|
| T |
15418970 |
tgtgataattatcttggtggtgttgttttggcatgaatattatgtgt-attatttatgttgtgttgttttaatgtaaataat-ctttgtttatggatgaa |
15419067 |
T |
|
| Q |
139 |
taac---aagtaactataatggtgattcaaaactatatccaaaggtgagatactcgacttttg-tttttaggagattacccaacggtggggtatttaaag |
234 |
Q |
| |
|
|||| |||||||| ||||| |||||||||||||||||||||||| |||| | |||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15419068 |
taaccttaagtaactgaaatggcgattcaaaactatatccaaaggtgggatattagacttttgattttttggagattacccaacggtggggtatttaaag |
15419167 |
T |
|
| Q |
235 |
agacattcatgcattagatgactcagacaaatgtccaatggtggggcagtgaccatcgagttttaggagttactaccc |
312 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||| |||||||||||||| |||||||||| ||||| |||||||||||| |
|
|
| T |
15419168 |
agactttcatgcattagatgactcacacaaatgcccaatggtggggcactgaccatcgatttttaagagttactaccc |
15419245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 40 - 312
Target Start/End: Original strand, 15425987 - 15426262
Alignment:
| Q |
40 |
tgtgataattattttggtggtgttgttttggcatgaatatcatgtgttattattg-tgtggtgttgttttaacatgaatactannnnnnnnatgggtgaa |
138 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| || ||| |||||| |||||||||||||||| |||| | ||||||||| |
|
|
| T |
15425987 |
tgtgataattagcttggtggtgttgttttggcatgaatattatatgt-attatttatgtggtgttgttttaatgaaaataat-ctttgtttatgggtgaa |
15426084 |
T |
|
| Q |
139 |
taac---aagtaactataatggtgattcaaaactatatccaaaggtgagatactcgacttttg-tttttaggagattacccaacggtggggtatttaaag |
234 |
Q |
| |
|
|||| |||||||| ||||| |||||||||||||||||||||||| |||| | |||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15426085 |
taaccttaagtaactgaaatggcgattcaaaactatatccaaaggtgggatattagacttttgattttttggagattacccaacggtggggtatttaaag |
15426184 |
T |
|
| Q |
235 |
agacattcatgcattagatgactcagacaaatgtccaatggtggggcagtgaccatcgagttttaggagttactaccc |
312 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
15426185 |
agactttcatgcattagatgactcacacaaatgcccaatggtggggcactgaccatcgagttttaggaattactaccc |
15426262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 2 - 312
Target Start/End: Complemental strand, 28654491 - 28654179
Alignment:
| Q |
2 |
tgtttttaaatgaaggattatgtgttttatatttatgttgtgataattattttggtggtgttgttttggcatgaatatcatgtgttattatt-gtgtggt |
100 |
Q |
| |
|
|||||| ||||||| ||||||||||| |||||| ||||||||||||||| |||||||| ||| ||||| |||||||| || ||||||||| ||||||| |
|
|
| T |
28654491 |
tgttttgaaatgaatgattatgtgttatatattggtgttgtgataattatcttggtggt-ttgctttggaatgaatattctgagttattatttgtgtggt |
28654393 |
T |
|
| Q |
101 |
gttgttttaacatgaatactannnnnnnnatgggtgaataac---aagtaactataatggtgattcaaaactatatccaaaggtgagatactcgactttt |
197 |
Q |
| |
|
||||||||||| | |||||| |||| || ||||| ||||||||| ||||||||||| ||||||||||||| | || |||||| ||||| |
|
|
| T |
28654392 |
gttgttttaacttaaatact-ctttgtttatggatgcataaccttaagtaacta-aatggtgattctaaactatatccaacgatgggatactagactta- |
28654296 |
T |
|
| Q |
198 |
gtttttaggag--attacccaacggtggggtatttaaagagacattcatgcattagatgactcagacaaatgtccaatggtggggcagtgaccatcgagt |
295 |
Q |
| |
|
| ||| ||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| || | ||| |||||||| |
|
|
| T |
28654295 |
gatttaaggagttattacccaatggtggggtatttacggagacattcatgcattagatgactcagacaaatgtccaacggtgaggtactgaacatcgagt |
28654196 |
T |
|
| Q |
296 |
tttaggagttactaccc |
312 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
28654195 |
tttaggagttattaccc |
28654179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 37 - 304
Target Start/End: Original strand, 52944884 - 52945158
Alignment:
| Q |
37 |
tgttgtgataattattttggtggtgttgttttggcatgaa-tatcatgtgttattattgt-gtggtgttgttttaacatgaatactannnnnnnnatggg |
134 |
Q |
| |
|
|||||||||||||| |||||||| || |||| ||||||| ||| ||||||||||||| | |||||||||||||||||| ||||||| ||||| |
|
|
| T |
52944884 |
tgttgtgataattaccttggtggttttattttagcatgaaatattatgtgttattattcttgtggtgttgttttaacataaatactatttgttt-atggg |
52944982 |
T |
|
| Q |
135 |
tgaataaca---agtaactataatggtgattcaaaactatatccaaaggtgagatactcgacttttgtttttaggagat--tacccaacggtggggtatt |
229 |
Q |
| |
|
||||||| |||||||| ||||||||||||| |||||||||||||||| |||||| ||| || | ||||| | ||||||| ||||||||||| |
|
|
| T |
52944983 |
tgaataatcttgagtaactaaaatggtgattcaacactatatccaaaggtgggatactagaccttagaggcgaggagttagtacccaatggtggggtatt |
52945082 |
T |
|
| Q |
230 |
taaagagacattcatgcattagatgactcagacaaatgtccaatggt-ggggcagtgaccatcgagttttaggagt |
304 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||||| |||||||| |||| | ||| |||| |||||||||||| |
|
|
| T |
52945083 |
tatggagatattcatgcattagatgactcagacaaatgcccaatggtgggggtactgaacatcaagttttaggagt |
52945158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0655 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0655
Description:
Target: scaffold0655; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 130 - 312
Target Start/End: Original strand, 7690 - 7875
Alignment:
| Q |
130 |
atgggtgaataac---aagtaactataatggtgattcaaaactatatccaaaggtgagatactcgacttttgtttttaggagattacccaacggtggggt |
226 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||| ||||||| |||||| || ||| ||| | ||||||| ||| |||||||| |
|
|
| T |
7690 |
atgggtgaataaccttaagtaactaaaatggtgattcaaaactatatcaaaaggtgggatactagattttatatttgacgagattagtcaatggtggggt |
7789 |
T |
|
| Q |
227 |
atttaaagagacattcatgcattagatgactcagacaaatgtccaatggtggggcagtgaccatcgagttttaggagttactaccc |
312 |
Q |
| |
|
||||| |||| | ||||||||||||||||||| ||||||| |||||||||||| | ||| ||||||||||||||||||| ||||| |
|
|
| T |
7790 |
atttatggagatagtcatgcattagatgactcaaacaaatgcccaatggtggggtactgaacatcgagttttaggagttattaccc |
7875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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