View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8812_high_2 (Length: 263)

Name: NF8812_high_2
Description: NF8812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8812_high_2
NF8812_high_2
[»] chr1 (2 HSPs)
chr1 (1-246)||(49547093-49547338)
chr1 (11-55)||(32123584-32123628)
[»] chr3 (4 HSPs)
chr3 (11-54)||(21777206-21777249)
chr3 (17-55)||(42668172-42668210)
chr3 (6-51)||(35586173-35586218)
chr3 (4-55)||(42157733-42157784)
[»] chr5 (4 HSPs)
chr5 (4-54)||(1175862-1175912)
chr5 (4-54)||(12150688-12150738)
chr5 (5-51)||(33740020-33740066)
chr5 (12-57)||(13839473-13839518)
[»] chr7 (2 HSPs)
chr7 (12-55)||(13858445-13858488)
chr7 (4-53)||(7181389-7181438)
[»] chr8 (2 HSPs)
chr8 (1-50)||(32874846-32874894)
chr8 (11-54)||(39418173-39418216)
[»] chr4 (2 HSPs)
chr4 (4-53)||(56439290-56439339)
chr4 (4-55)||(34713068-34713117)
[»] chr2 (2 HSPs)
chr2 (4-49)||(38216438-38216483)
chr2 (1-53)||(5193178-5193229)


Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 49547093 - 49547338
Alignment:
Q  1 aatttaaaagtatattaatgataaacattcatttatcattatctacaaaaacactatnnnnnnnntgtgcaagatttctccaatttcccccctactcttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||| |||||||||||||||||||| ||||||| |    
T  49547093 aatttaaaagtatattaatgataaacattcatttatcattatctacaaaaacactataaaaaaaatgtggaagatttctccaatttcccctctactctcc 49547192  T
Q  101 ctcccctcgaaactctcagagtcttagttgctgttttttcaatcgtgaagttttcaaaatattttctggccgtaagacagtttttaccagtggaaattag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  49547193 ctcccctcgaaactctcagagtcttagttgctgttttttcaatcgtgaagttttcaaaatattttctggccgtaagacagtttttacccgtggaaattag 49547292  T
Q  201 tttccgaagtagatataatgcatgaacctctaacccctattttaat 246  Q
    || |||||||||||||||||||||||||||||||||||||||||||    
T  49547293 ttcccgaagtagatataatgcatgaacctctaacccctattttaat 49547338  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 32123584 - 32123628
Alignment:
Q  11 tatattaatgataaacattcatttatcattatctacaaaaacact 55  Q
    |||||||||||||||||||||||||||||| | ||||||||||||    
T  32123584 tatattaatgataaacattcatttatcattctttacaaaaacact 32123628  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 21777249 - 21777206
Alignment:
Q  11 tatattaatgataaacattcatttatcattatctacaaaaacac 54  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  21777249 tatattaatgataaacattcatttatcattctctacaaaaacac 21777206  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 42668172 - 42668210
Alignment:
Q  17 aatgataaacattcatttatcattatctacaaaaacact 55  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42668172 aatgataaacattcatttatcattatctacaaaaacact 42668210  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 35586218 - 35586173
Alignment:
Q  6 aaaagtatattaatgataaacattcatttatcattatctacaaaaa 51  Q
    |||| |||||||||||||||| ||||||||||||| ||||||||||    
T  35586218 aaaaatatattaatgataaactttcatttatcattctctacaaaaa 35586173  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 42157784 - 42157733
Alignment:
Q  4 ttaaaagtatattaatgataaacattcatttatcattatctacaaaaacact 55  Q
    |||||| ||||| |||||||||||||||||||||||| ||| ||||| ||||    
T  42157784 ttaaaaatatatgaatgataaacattcatttatcattctctgcaaaagcact 42157733  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 1175912 - 1175862
Alignment:
Q  4 ttaaaagtatattaatgataaacattcatttatcattatctacaaaaacac 54  Q
    |||||| ||||||||| |||||||||||||||||||| |||||||||||||    
T  1175912 ttaaaaatatattaatcataaacattcatttatcattctctacaaaaacac 1175862  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 12150688 - 12150738
Alignment:
Q  4 ttaaaagtatattaatgataaacattcatttatcattatctacaaaaacac 54  Q
    |||||| ||||||||| ||||  ||||||||||||||||||||||||||||    
T  12150688 ttaaaaatatattaatcataagtattcatttatcattatctacaaaaacac 12150738  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 33740066 - 33740020
Alignment:
Q  5 taaaagtatattaatgataaacattcatttatcattatctacaaaaa 51  Q
    ||||| ||||||||| ||||||||| ||||||||||||||| |||||    
T  33740066 taaaattatattaattataaacattgatttatcattatctaaaaaaa 33740020  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 13839518 - 13839473
Alignment:
Q  12 atattaatgataaacattcatttatcattatctacaaaaacactat 57  Q
    |||||||| ||||| |||||||||||||| ||||||||| ||||||    
T  13839518 atattaatcataaatattcatttatcattctctacaaaaccactat 13839473  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 13858445 - 13858488
Alignment:
Q  12 atattaatgataaacattcatttatcattatctacaaaaacact 55  Q
    |||||||| |||| ||||||||||||||||||||||||||||||    
T  13858445 atattaatcataagcattcatttatcattatctacaaaaacact 13858488  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 7181438 - 7181389
Alignment:
Q  4 ttaaaagtatattaatgataaacattcatttatcattatctacaaaaaca 53  Q
    |||||| ||||||||| |||| ||||| ||||||||| ||||||||||||    
T  7181438 ttaaaaatatattaatcataagcattcttttatcattctctacaaaaaca 7181389  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 32874846 - 32874894
Alignment:
Q  1 aatttaaaagtatattaatgataaacattcatttatcattatctacaaaa 50  Q
    ||||||||| ||||||||| |||||||||||||| |||||||||||||||    
T  32874846 aatttaaaa-tatattaatcataaacattcatttttcattatctacaaaa 32874894  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 39418173 - 39418216
Alignment:
Q  11 tatattaatgataaacattcatttatcattatctacaaaaacac 54  Q
    ||||||||| ||||||||||||||||||||  ||||||||||||    
T  39418173 tatattaatcataaacattcatttatcattccctacaaaaacac 39418216  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 56439339 - 56439290
Alignment:
Q  4 ttaaaagtatattaatgataaacattcatttatcattatctacaaaaaca 53  Q
    |||||| |||||||||||| ||||||||| ||||||| ||||||| ||||    
T  56439339 ttaaaaatatattaatgattaacattcatctatcattctctacaataaca 56439290  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 34713068 - 34713117
Alignment:
Q  4 ttaaaagtatattaatgataaacattcatttatcattatctacaaaaacact 55  Q
    |||||| ||||||||| ||||||||||||||||||   ||||||||||||||    
T  34713068 ttaaaaatatattaatcataaacattcatttatca--ctctacaaaaacact 34713117  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 38216483 - 38216438
Alignment:
Q  4 ttaaaagtatattaatgataaacattcatttatcattatctacaaa 49  Q
    |||||| ||||||||| |||||||||||| ||||||| ||||||||    
T  38216483 ttaaaaatatattaatcataaacattcatctatcattctctacaaa 38216438  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 5193178 - 5193229
Alignment:
Q  1 aatttaaaagtatattaatgataaacattcatttatcattatctacaaaaaca 53  Q
    ||||||||| ||||||||| |||||||||||||||| ||| | ||||||||||    
T  5193178 aatttaaaa-tatattaatcataaacattcatttattattctgtacaaaaaca 5193229  T

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