View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8812_high_4 (Length: 250)
Name: NF8812_high_4
Description: NF8812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8812_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 14597830 - 14598063
Alignment:
| Q |
1 |
cctcttctctcgagatacatatactaacatcggcaaacgtgtatctacctcagagaaatctatgatcttgtcgtctgcacttcccattaatggatcggga |
100 |
Q |
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| T |
14597830 |
cctcttctctcgagatacatatactaacatcggcaaacgtgtatctacctcagagaaatctatgatcttgtcgtcttcacttcccattaacggatcaggg |
14597929 |
T |
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| Q |
101 |
ctgggcggcttcaacataacctatttatatacatgcatgcatttaaattatgatatatatgtgaaacataagttaaagttcaggattgaatttattctta |
200 |
Q |
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| T |
14597930 |
ctgggcggcttcaacatcacctatttatatacatgcatgcatttaaattatgaaatatatgtgaaacataagttaaagttcaggattgaatttattctta |
14598029 |
T |
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| Q |
201 |
g--gtataatatatgagtaaatacctgaagtatt |
232 |
Q |
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| T |
14598030 |
gatatataatatatgagtaaatacctgaagtatt |
14598063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 14610675 - 14610517
Alignment:
| Q |
1 |
cctcttctctcgagatacatatactaacatcggcaaacgtgtatctacctcagagaaatctatgatcttgtcgtctgcacttcccattaatggatcggga |
100 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||||| ||| |||||| ||||| |||| || |||||||| | |||||||||| ||| |
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| T |
14610675 |
cctcttctctcgagatacataaaccaacatcggcaaacgtgtatctacgtcactgaaatcaatgatgttgttgtttgcacttcgcgttaatggatcagga |
14610576 |
T |
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| Q |
101 |
ctgggcggcttcaacataacctatttatatacatgcatgcatttaaattatgatatata |
159 |
Q |
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| T |
14610575 |
cttggaggctttagcatcacctactcatatacacgcatatagttaaattaagatatata |
14610517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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