View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8812_low_1 (Length: 299)
Name: NF8812_low_1
Description: NF8812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8812_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 16 - 283
Target Start/End: Complemental strand, 1058652 - 1058389
Alignment:
| Q |
16 |
tcaacaacttccaaaacaatccgacaacggttctcaagggatccaccatattcatctgttctgtcgttcacttgatctttcatgaattgctcaagtatgt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1058652 |
tcaacaacttccaaaacaatccgacaacggttctcaagggatccaccatattcatctgttctgtcgttcacttgatctttcatgaattgctcaagtatgt |
1058553 |
T |
|
| Q |
116 |
agccattagccccatggatttcaaccccatcaaaccctgcaatttgcacccccaatgagtatgttacagaattgtaaaatgtcctagtgccctctaaagc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1058552 |
agccattagccccatggatttcaaccccatcaaaccctgcaatttgcacccccaatgagtatgttacagaattgtaaaatgtcctagtgccctctaaagc |
1058453 |
T |
|
| Q |
216 |
aacattgtattatgtatggtacattgaataattttttaattttggagatatttgtaaagattagtatt |
283 |
Q |
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| T |
1058452 |
aaaattgtat----tatggtacattgaagaattttttaattttggagatatttgtaaagattagtatt |
1058389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 1071471 - 1071282
Alignment:
| Q |
16 |
tcaacaacttccaaaacaatccgacaacggttctcaagggatccaccatattcatctgttctgtcgttcacttgatctttcatgaattgctcaagtatgt |
115 |
Q |
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|
||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||| ||||| ||||||| ||||||||||||||| ||||| | || |
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| T |
1071471 |
tcaacaacttccaaagcaaaccgacaacggttctcaagggatccaccatactcatctgtcctgtcattcactttatctttcatgaattgttcaaggaggt |
1071372 |
T |
|
| Q |
116 |
agccattagccccatggatttcaaccccatcaaaccctgcaatttgcacccccaatgagtatgttacagaattgtaaaatgtcctagtgcc |
206 |
Q |
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| T |
1071371 |
agccatgagctccatggatttcaaccccatcaaatcctgcaatttgta-ccccactaagtatgatacataattggaaaatgtcctagtgcc |
1071282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 16 - 216
Target Start/End: Complemental strand, 1065744 - 1065545
Alignment:
| Q |
16 |
tcaacaacttccaaaacaatccgacaacggttctcaagggatccaccatattcatctgttctgtcgttcacttgatctttcatgaattgctcaagtatgt |
115 |
Q |
| |
|
||||||||||||||| ||| ||||| |||||||| || || ||||||||||||||||| ||||| ||||||| ||||||||||||||||||||| | || |
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| T |
1065744 |
tcaacaacttccaaagcaaatcgacagcggttctccagagacccaccatattcatctgtcctgtcattcactttatctttcatgaattgctcaaggaggt |
1065645 |
T |
|
| Q |
116 |
agccattagccccatggatttcaaccccatcaaaccctgcaatttgcacccccaatgagtatgttacagaattgtaaaatgtcctagtgccctctaaagc |
215 |
Q |
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|||||| ||| ||||||||||||||||||||||| |||||||||||| ||| | | ||||||||| | ||||||||||||||| ||||| ||||||||| |
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| T |
1065644 |
agccatgagctccatggatttcaaccccatcaaatcctgcaatttgc-gccctagtaagtatgttatataattgtaaaatgtcccagtgctctctaaagc |
1065546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 1044129 - 1043980
Alignment:
| Q |
16 |
tcaacaacttccaaaacaatccgacaacggttctcaagggatccaccatattcatctgttctgtcgttcacttgatctttcatgaattgctcaagtatgt |
115 |
Q |
| |
|
||||||||||||||| || |||||||| ||||| ||||||||||| ||||||||||||||||| ||||||| ||||||||||||||| ||||||| || |
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| T |
1044129 |
tcaacaacttccaaaggaaatcgacaacgattctcgagggatccaccgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggt |
1044030 |
T |
|
| Q |
116 |
agccattagccccatggatttcaaccccatcaaaccctgcaatttgcacc |
165 |
Q |
| |
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|||||| ||| |||||||||||||| |||||||| ||| ||||||||||| |
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|
| T |
1044029 |
agccatgagctccatggatttcaactccatcaaaaccttcaatttgcacc |
1043980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 1033742 - 1033595
Alignment:
| Q |
16 |
tcaacaacttccaaaacaatccgacaacggttctcaagggatccaccatattcatctgttctgtcgttcacttgatctttcatgaattgctcaagtatgt |
115 |
Q |
| |
|
|||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||| ||||||| || |
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| T |
1033742 |
tcaacaacttccaatgcaaatcgacaacgattctcaagggatccaccatattcatctgttctatcattcactttatctttcatgaattgttcaagtaggt |
1033643 |
T |
|
| Q |
116 |
agccattagccccatggatttcaaccccatcaaaccctgcaatttgca |
163 |
Q |
| |
|
|||||| ||| ||||| | |||||| |||||||| ||||||||||||| |
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| T |
1033642 |
agccatgagctccatgaagttcaacaccatcaaaacctgcaatttgca |
1033595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 1053387 - 1053238
Alignment:
| Q |
16 |
tcaacaacttccaaaacaatccgacaacggttctcaagggatccaccatattcatctgttctgtcgttcacttgatctttcatgaattgctcaagtatgt |
115 |
Q |
| |
|
||||||| ||||||||||| | |||||| || ||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||| |||| || || |
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| T |
1053387 |
tcaacaatttccaaaacaaatctacaacgattttcaagggttccaccatattcatctgttctgtcgtttgctttatctttcatgaattgttcaactaggt |
1053288 |
T |
|
| Q |
116 |
agccattagccccatggatttcaaccccatcaaaccctgcaatttgcacc |
165 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||| ||| ||||||||||| |
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| T |
1053287 |
agccatgagctccatggatttcaaccccatcaaaacctacaatttgcacc |
1053238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 1046712 - 1046579
Alignment:
| Q |
16 |
tcaacaacttccaaaacaatccgacaacggttctcaagggatccaccatattcatctgttctgtcgttcacttgatctttcatgaattgctcaagtatgt |
115 |
Q |
| |
|
||||||| ||||||||||| ||||||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| || |
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| T |
1046712 |
tcaacaatttccaaaacaaatttacaacggttttcaagagttccaccatattcatctgttctgtcattcactttatctttcatgaattgctcaagtaggt |
1046613 |
T |
|
| Q |
116 |
agccattagccccatggatttcaaccccatcaaa |
149 |
Q |
| |
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| ||| |||||||| | ||||||||||||||||| |
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| T |
1046612 |
atccagtagccccacgaatttcaaccccatcaaa |
1046579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 1640814 - 1640960
Alignment:
| Q |
16 |
tcaacaacttccaaaacaatccgacaacggttctcaagggatccaccatattcatctgttctgtcgttcacttgatctttcatgaattgctcaagtatgt |
115 |
Q |
| |
|
||||||| ||||||| | | ||||||||||| ||||||| |||||| |||| ||| |||| ||| ||||||| ||||||||| ||||||||||||| || |
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|
| T |
1640814 |
tcaacaatttccaaagcgaatcgacaacggttttcaagggttccaccgtatttatcagttcggtcattcactttatctttcataaattgctcaagtaggt |
1640913 |
T |
|
| Q |
116 |
agccattagccccatggatttcaaccccatcaaaccctgcaatttgc |
162 |
Q |
| |
|
| || | |||||||||||| ||||| |||||||| |||||||||||| |
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|
| T |
1640914 |
aaccgtgagccccatggatctcaactccatcaaaacctgcaatttgc |
1640960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 1071240 - 1071194
Alignment:
| Q |
235 |
tacattgaataattttttaattttggagatatttgtaaagattagta |
281 |
Q |
| |
|
|||||| |||||||| |||||||| |||| ||||||||||||||||| |
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|
| T |
1071240 |
tacattaaataatttattaatttttgagacatttgtaaagattagta |
1071194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 44171305 - 44171452
Alignment:
| Q |
16 |
tcaacaacttccaaaacaatccgacaacggttctcaagggatccaccatattcatctgttctgtcgttcacttgatctttcatgaattgctcaagtatgt |
115 |
Q |
| |
|
|||||||||||||| ||| || ||| |||||||| |||||||||||||||||||||||| || | ||||||| ||| ||||||||||| ||||||| || |
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| T |
44171305 |
tcaacaacttccaatccaaaccaacatcggttctctagggatccaccatattcatctgttttgccattcactttatccttcatgaattgttcaagtaggt |
44171404 |
T |
|
| Q |
116 |
agccattagccccatggatttcaaccccatcaaaccctgcaatttgca |
163 |
Q |
| |
|
|||||| ||| ||||| ||||| || |||||||| ||||||||||||| |
|
|
| T |
44171405 |
agccatgagctccatgaatttccacaccatcaaaacctgcaatttgca |
44171452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 44191601 - 44191748
Alignment:
| Q |
16 |
tcaacaacttccaaaacaatccgacaacggttctcaagggatccaccatattcatctgttctgtcgttcacttgatctttcatgaattgctcaagtatgt |
115 |
Q |
| |
|
|||||||||||||| ||| || ||| |||||||| |||||||||||||||||||||||| || | ||||||| ||| ||||||||||| ||||||| || |
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| T |
44191601 |
tcaacaacttccaatccaaaccaacatcggttctctagggatccaccatattcatctgttttgccattcactttatccttcatgaattgttcaagtaggt |
44191700 |
T |
|
| Q |
116 |
agccattagccccatggatttcaaccccatcaaaccctgcaatttgca |
163 |
Q |
| |
|
|||||| ||| ||||| ||||| || |||||||| ||||||||||||| |
|
|
| T |
44191701 |
agccatgagctccatgaatttccacaccatcaaaacctgcaatttgca |
44191748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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