View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8813_high_4 (Length: 314)
Name: NF8813_high_4
Description: NF8813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8813_high_4 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 14 - 314
Target Start/End: Complemental strand, 43516532 - 43516232
Alignment:
| Q |
14 |
atcattgagcaacatctataagcaatgaagcgtttttactttaaggttcctttcctcccaagccgttgttaccttacaaagcaactaagtattaactagg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43516532 |
atcattgagcaacatctataagcaatgaagtgtttttactttaaggttcctttcctcccaaatcgttgttaccttacaaagcaattaagtattaactagg |
43516433 |
T |
|
| Q |
114 |
gattcgatttgtcctgttttacgttggattcatccaacgatatatattaagtgagtattgtcatttannnnnnnnnnnnnnggtgtggactgtgtatctt |
213 |
Q |
| |
|
||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
43516432 |
gattcaatttctcctattttacgttggattcatccaacgatatatattaagtgagtattgtcgtttattttttatttttttggtgtggactgtgtatctt |
43516333 |
T |
|
| Q |
214 |
caccataattgaatagactaatccctcaaacggttagaattgcaatgtgtgacaaagctcactcacaaaatatttgattggtgttagatttgaaccatga |
313 |
Q |
| |
|
||||| |||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43516332 |
caccacaattgaatagactaatccatcgaacggttagaattgcaatgtgtaacaaagctcactcacaaaatatttgattggtgttagatttgaaccatga |
43516233 |
T |
|
| Q |
314 |
c |
314 |
Q |
| |
|
| |
|
|
| T |
43516232 |
c |
43516232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University