View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8813_low_1 (Length: 676)

Name: NF8813_low_1
Description: NF8813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8813_low_1
NF8813_low_1
[»] chr7 (1 HSPs)
chr7 (1-656)||(24926509-24927169)


Alignment Details
Target: chr7 (Bit Score: 611; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 1 - 656
Target Start/End: Complemental strand, 24927169 - 24926509
Alignment:
Q  1 tatgcagcatagcaattttcctctttgatt------cttctaccttactcaaaaccttatactttcatttcttttatattccaactagtagtaatgcatt 94  Q
    |||||||||||||||||||||||||||| |      |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  24927169 tatgcagcatagcaattttcctctttgaattaagatcttctaccttactcaaaaccttgtactttcatttcttttatattccaactagtagtaatgcatt 24927070  T
Q  95 atgtgttttttagttgatttaattcattcgacacatacacctttcttgtgttgcaggtagataatatccaaatagaacctagttcaagaagcaatgtagt 194  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24927069 atgtgttttttagttgatttaattcattcgacacatacacctt-cttgtgttgcaggtagataatatccaaatagaacctagttcaagaagcaatgtagt 24926971  T
Q  195 ttctaagcatcatgcatcaatgtcaagttttggttcttccactaatggcagtaagaggatttcttcgtcaaggggtccatctccagctacttcaagatct 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24926970 ttctaagcatcatgcatcaatgtcaagttttggttcttccactaatggcagtaagaggatttcttcgtcaaggggtccatctccagctacttcaagatct 24926871  T
Q  295 tcaactccatctggaaggccaacattaccttcaacaaagaaatcctcgaggccctctacgcctacctcgcgggccacattaacttctacgaagtctacag 394  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24926870 tcaactccatctggaaggccaacattaccttcaacaacgaaatcctcgaggccctctacgcctacctcgcgggccacattaacttctacgaagtctacag 24926771  T
Q  395 ctccaccagtgagatcatcaactcccactagacccgcttcgagggcctcaacacctacttcaaggccttccttgacagctcctaagacatctcaaagatc 494  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24926770 ctccaccagtgagatcatcaactcccactagacccacttcgagggcctcaacacctacttcaaggccttccttgacagctcctaagacatctcaaagatc 24926671  T
Q  495 agcaactcctaatattcgatcatcaacaccttcgaggacatttggagtatctgctcctcctactcgaccttcatcaacatcaaaagcacggcctgttgtt 594  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  24926670 agcaactcctaatattcgatcatcaacaccttcgaggacatttggagtatctgctcctcctactcgaccttcatcaacatcaaaagcacgccctgttgtt 24926571  T
Q  595 gctaagaatccggtgcagtcacgtggcatctctccatcagtaaaatctagaccttgggaacc 656  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24926570 gctaagaatccggtgcagtcacgtggcatctctccatcagtaaaatctagaccttgggaacc 24926509  T

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