View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8813_low_4 (Length: 353)
Name: NF8813_low_4
Description: NF8813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8813_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 53 - 341
Target Start/End: Complemental strand, 48698469 - 48698184
Alignment:
| Q |
53 |
tacaattgtattgtcaacattcattcattcattatttatttttggctctaatcaacattcattctttacaacatcacgtgtttgcagccattttagaatt |
152 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
48698469 |
tacaattgtattgtcaacattcattcatt----atttatttttggctctaatcaacattcattctttacaacatcacatgtttgcagccattttagaatt |
48698374 |
T |
|
| Q |
153 |
ttccaaattcgttgtggaacttgctctcctataacataactcctacatgttgtatttttgggtgcaaaacatactag-nnnnnnnatccatatagaattt |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
48698373 |
ttccaaattcgttgtggaacttgctctcctataacataactcctacatgttgtatttttgggtgcaaaacatactagttttttttatccatatagaattt |
48698274 |
T |
|
| Q |
252 |
catataactattaagagaaatagttcatatagtaaataaatgcaataaaatatagattccgattgatgttaacagtactgattcttctca |
341 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48698273 |
catataactattaagagaaaaagttcatatagtaaataaatgcaataaaatatagattccgattgatgttaacagtactgattcttctca |
48698184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University