View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8815_low_1 (Length: 494)
Name: NF8815_low_1
Description: NF8815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8815_low_1 |
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| [»] chr6 (4 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 457; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 18 - 494
Target Start/End: Original strand, 3080217 - 3080693
Alignment:
| Q |
18 |
aaatattgttctaatttgtatatcaaagtcgtccaaatcttcattattgtccaattctaatttgacattgtccccatcaaggttgctatcaccactcaat |
117 |
Q |
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| T |
3080217 |
aaatattgttctaatttgtatatcaaagtcgtccaaatcttcattattgtccaattctaatttgacattgtccccaccaaggttgctatcaccactcaat |
3080316 |
T |
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| Q |
118 |
tttgcaccccttgtatccatagaatttatattcaagtttgtatcaattggagaattattaacatcatgaggggtggtttgactaacataagaagaagatg |
217 |
Q |
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| T |
3080317 |
tttgcaccccttgtatccatagaatttatattcaagtttgtatcaattggagaattattaacatcatgaggggtggtttgactaacataagaagaagatg |
3080416 |
T |
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| Q |
218 |
gtatcatcatattattttcactattgtgataataattaccaacatcaccataattattaaacacttgaaaactagtagaagctatggagaaataaagatt |
317 |
Q |
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| T |
3080417 |
gtatcatcatattattttcactattttgataataattaccaacatcaccataattgttaaacacttgaaaactagtagaaggtatggaggaataaagatt |
3080516 |
T |
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| Q |
318 |
ttgttgttgtaaatggttgttttgcttacaataagctaatagccattttaattgatctaactctttagaagacttatttatcatacctgcatacatatga |
417 |
Q |
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| T |
3080517 |
ttgttgttgtaaatggttgttttgcttacaataagctaatagccattttaattgatctaactctttagaagacttatttatcatacctgcatacatatga |
3080616 |
T |
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| Q |
418 |
ataacaccaagacatccatgaattgggaaatttgcacgaattttcgactcaacaataattgatttcattgcttcatc |
494 |
Q |
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| T |
3080617 |
ataacaccaagacatccatgaattgggaaatttgcacgaattttcgactcaacaataattgatttcattgcttcatc |
3080693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 488
Target Start/End: Complemental strand, 3104488 - 3104414
Alignment:
| Q |
414 |
atgaataacaccaagacatccatgaattgggaaatttgcacgaattttcgactcaacaataattgatttcattgc |
488 |
Q |
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| T |
3104488 |
atgaataacaccaacacatccatgaacggggaattctgcacgaatatccgactcaaaaataattgaatccattgc |
3104414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 417 - 494
Target Start/End: Original strand, 324980 - 325057
Alignment:
| Q |
417 |
aataacaccaagacatccatgaattgggaaatttgcacgaattttcgactcaacaataattgatttcattgcttcatc |
494 |
Q |
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| T |
324980 |
aataagaccaagacatccatgacttgggtatcttgcacgcatttctgactcaaaaataatcgacttcattgcttcatc |
325057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 324528 - 324589
Alignment:
| Q |
128 |
ttgtatccatagaatttatattcaagtttgtatcaattggagaattattaacatcatgaggg |
189 |
Q |
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| T |
324528 |
ttgtatccataaaatttatattcgaatttgtatcagatggaaatttgttaacatcatgaggg |
324589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 370 - 494
Target Start/End: Complemental strand, 41122232 - 41122108
Alignment:
| Q |
370 |
tgatctaactctttagaagacttatttatcatacctgcatacatatgaataacaccaagacatccatgaattgggaaatttgcacgaattttcgactcaa |
469 |
Q |
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| T |
41122232 |
tgatctaactcatcaacagacttctttaacatgcctccgtacatatgaataacaccgagacatccagtagcagggaatcttgcacgcatatccgactcaa |
41122133 |
T |
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| Q |
470 |
caataattgatttcattgcttcatc |
494 |
Q |
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| T |
41122132 |
agataattgatttcattgcttcatc |
41122108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 469
Target Start/End: Complemental strand, 36915244 - 36915192
Alignment:
| Q |
417 |
aataacaccaagacatccatgaattgggaaatttgcacgaattttcgactcaa |
469 |
Q |
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| T |
36915244 |
aataacaccaagacatccatgaacgggaaattttgcacgaatatccgactcaa |
36915192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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