View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8815_low_2 (Length: 422)

Name: NF8815_low_2
Description: NF8815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8815_low_2
NF8815_low_2
[»] chr6 (8 HSPs)
chr6 (1-319)||(15474788-15475106)
chr6 (1-319)||(15168646-15168964)
chr6 (1-319)||(15181728-15182046)
chr6 (331-360)||(15154587-15154616)
chr6 (331-360)||(15159045-15159074)
chr6 (331-360)||(15169008-15169037)
chr6 (331-360)||(15182090-15182119)
chr6 (331-360)||(15474715-15474744)
[»] chr2 (2 HSPs)
chr2 (1-250)||(23252580-23252829)
chr2 (270-320)||(23252529-23252579)
[»] scaffold0376 (2 HSPs)
scaffold0376 (12-73)||(9749-9810)
scaffold0376 (174-247)||(9905-9978)


Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 15475106 - 15474788
Alignment:
Q  1 aaatacataccatgatctttcatcagagtagcagcaatcaagtcatttcggaacctactattattcacttcttctgtctggtttatcaaagaagaagctt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  15475106 aaatacataccatgatctttcatcagagtagcagcaatcaagtcatttcggaccctactattattcacttcttctgtctggtttaccaaagaagaagctt 15475007  T
Q  101 tcaaattctttttgttcttacgattattctcttcttctagcaaacctgccacgcgaatcaaatcaaacaaaattcttgttctgcggaccatctcatgata 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||| |||||||||||| ||||    
T  15475006 tcaaattctttttgttcttacgattattctcttcttctagcaaacctgacacacgaatcgaatcaaacaaaattcttgttctccggaccatctcacgata 15474907  T
Q  201 cggacggcgatccacatccatcgcagtgtgaacaagctccttgttctgccctctaagcttctgcttagattttgaagcttttcccgccagagtgttactg 300  Q
    ||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||  ||    
T  15474906 cggacggtgatccgcatccatcacagtgtgaacaagctccttgttctgccctctaagcttctgcttagattttgaatcttttcccgtcagagtgttgttg 15474807  T
Q  301 tcgtaattttgtaactcgt 319  Q
    |||||||||||||||||||    
T  15474806 tcgtaattttgtaactcgt 15474788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 15168646 - 15168964
Alignment:
Q  1 aaatacataccatgatctttcatcagagtagcagcaatcaagtcatttcggaacctactattattcacttcttctgtctggtttatcaaagaagaagctt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  15168646 aaatacataccatgatctttcatcagagtagcagcaatcaagtcattttggaccctactattattcacttcttctgtctggtttatcatagaagaagctt 15168745  T
Q  101 tcaaattctttttgttcttacgattattctcttcttctagcaaacctgccacgcgaatcaaatcaaacaaaattcttgttctgcggaccatctcatgata 200  Q
    ||||||||||||||||||||| | ||||||||||||| |||||||||| |||||||||| |||||| ||||||||||| ||| |||||||||||| ||||    
T  15168746 tcaaattctttttgttcttacaaatattctcttcttccagcaaacctgacacgcgaatcgaatcaaccaaaattcttgatctccggaccatctcacgata 15168845  T
Q  201 cggacggcgatccacatccatcgcagtgtgaacaagctccttgttctgccctctaagcttctgcttagattttgaagcttttcccgccagagtgttactg 300  Q
    |  |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||  ||||||||| |||    
T  15168846 ctaacggtgatccgcatccatcgcagtgtgaacaagctccttgttctgccctctaagcttctgcttagattttaaagctttttccttcagagtgttgctg 15168945  T
Q  301 tcgtaattttgtaactcgt 319  Q
    |||||||||||||||||||    
T  15168946 tcgtaattttgtaactcgt 15168964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 15181728 - 15182046
Alignment:
Q  1 aaatacataccatgatctttcatcagagtagcagcaatcaagtcatttcggaacctactattattcacttcttctgtctggtttatcaaagaagaagctt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  15181728 aaatacataccatgatctttcatcagagtagcagcaatcaagtcattttggaccctactattattcacttcttctgtctggtttatcatagaagaagctt 15181827  T
Q  101 tcaaattctttttgttcttacgattattctcttcttctagcaaacctgccacgcgaatcaaatcaaacaaaattcttgttctgcggaccatctcatgata 200  Q
    ||||||||||||||||||||| | ||||||||||||| |||||||||| |||||||||| |||||| ||||||||||| ||| |||||||||||| ||||    
T  15181828 tcaaattctttttgttcttacaaatattctcttcttccagcaaacctgacacgcgaatcgaatcaaccaaaattcttgatctccggaccatctcacgata 15181927  T
Q  201 cggacggcgatccacatccatcgcagtgtgaacaagctccttgttctgccctctaagcttctgcttagattttgaagcttttcccgccagagtgttactg 300  Q
    |  |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||  ||||||||| |||    
T  15181928 ctaacggtgatccgcatccatcgcagtgtgaacaagctccttgttctgccctctaagcttctgcttagattttaaagctttttccttcagagtgttgctg 15182027  T
Q  301 tcgtaattttgtaactcgt 319  Q
    |||||||||||||||||||    
T  15182028 tcgtaattttgtaactcgt 15182046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 360
Target Start/End: Original strand, 15154587 - 15154616
Alignment:
Q  331 ttgaaaattcatgttgttattactgtattt 360  Q
    ||||||||||||||||||||||||||||||    
T  15154587 ttgaaaattcatgttgttattactgtattt 15154616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 360
Target Start/End: Original strand, 15159045 - 15159074
Alignment:
Q  331 ttgaaaattcatgttgttattactgtattt 360  Q
    ||||||||||||||||||||||||||||||    
T  15159045 ttgaaaattcatgttgttattactgtattt 15159074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 360
Target Start/End: Original strand, 15169008 - 15169037
Alignment:
Q  331 ttgaaaattcatgttgttattactgtattt 360  Q
    ||||||||||||||||||||||||||||||    
T  15169008 ttgaaaattcatgttgttattactgtattt 15169037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 360
Target Start/End: Original strand, 15182090 - 15182119
Alignment:
Q  331 ttgaaaattcatgttgttattactgtattt 360  Q
    ||||||||||||||||||||||||||||||    
T  15182090 ttgaaaattcatgttgttattactgtattt 15182119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 360
Target Start/End: Complemental strand, 15474744 - 15474715
Alignment:
Q  331 ttgaaaattcatgttgttattactgtattt 360  Q
    ||||||||||||||||||||||||||||||    
T  15474744 ttgaaaattcatgttgttattactgtattt 15474715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 23252829 - 23252580
Alignment:
Q  1 aaatacataccatgatctttcatcagagtagcagcaatcaagtcatttcggaacctactattattcacttcttctgtctggtttatcaaagaagaagctt 100  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||    
T  23252829 aaatacataccatgatcgttcatcaaagtagcagcaatcaagtcatttcggaccctacaattattcacttcttctgtttggtttatcaaagaagaagctt 23252730  T
Q  101 tcaaattctttttgttcttacgattattctcttcttctagcaaacctgccacgcgaatcaaatcaaacaaaattcttgttctgcggaccatctcatgata 200  Q
    |||||| ||||||| |||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||| |||||||||||| ||||    
T  23252729 tcaaatactttttgatcttacgattattctcttcttccagcaaacctgacacgcgaatcgaatcaaacaaaattcttgttctccggaccatctcacgata 23252630  T
Q  201 cggacggcgatccacatccatcgcagtgtgaacaagctccttgttctgcc 250  Q
    || |||| ||||  |||||||| |||||||||||||||||||||||||||    
T  23252629 cgaacggtgatctgcatccatcacagtgtgaacaagctccttgttctgcc 23252580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 270 - 320
Target Start/End: Complemental strand, 23252579 - 23252529
Alignment:
Q  270 ttttgaagcttttcccgccagagtgttactgtcgtaattttgtaactcgtc 320  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  23252579 ttttgaagcttttcccaccagagtgttgctgtcgtaattttgtaactcgtc 23252529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 9749 - 9810
Alignment:
Q  12 atgatctttcatcagagtagcagcaatcaagtcatttcggaacctactattattcacttctt 73  Q
    |||||| ||||||  |||||||||  |||| ||||||| || ||||||||||||||||||||    
T  9749 atgatcgttcatcgaagtagcagctgtcaaatcatttctgatcctactattattcacttctt 9810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 9905 - 9978
Alignment:
Q  174 tcttgttctgcggaccatctcatgatacggacggcgatccacatccatcgcagtgtgaacaagctccttgttct 247  Q
    ||||||||| |||||| ||||  || |  ||||| ||||| ||||||||||||||  |||||||||||||||||    
T  9905 tcttgttcttcggaccgtctcgcgacattgacggtgatccccatccatcgcagtgctaacaagctccttgttct 9978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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