View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8816_high_1 (Length: 401)
Name: NF8816_high_1
Description: NF8816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8816_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 19 - 396
Target Start/End: Original strand, 46895451 - 46895828
Alignment:
| Q |
19 |
atcttagcttggatcggaatacgaaatgcttcttttcccccaagaatgtgtgatgatcctatccaatgttgccctatctttctaacaaaatactacgttc |
118 |
Q |
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| T |
46895451 |
atcttagcttggatcggaatacgaaatgcttcttttcccccaagaacgtgtgatgatcctatccaatgttgccctatctttctaacaaaatactacgttc |
46895550 |
T |
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| Q |
119 |
ttgaaaaacatctcttttctaacaatggtaacttgatcatctctatctacatgcctttcctcatcaccaccctatatatctctctttaaagatgctttgt |
218 |
Q |
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| T |
46895551 |
ttgaaaaacatctcttttctaacaatggtaacttgattatctctttctacatgcctttcctcatcaccaccctatatatctctctttaaagatgctttgt |
46895650 |
T |
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| Q |
219 |
tcctaaaaatagtctatagtatctattatctatatatcaaaatattagaactttcagaactttgttatttttctgttatggttattttattaggcagcag |
318 |
Q |
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| T |
46895651 |
tcctaaaaatagtctatagtatctactatctatatatcaaaatattagaaatttcagaactttgttatttttctgttatggttattttattaggcagcag |
46895750 |
T |
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| Q |
319 |
ctgttcatgaaaacatttgagactttttatccaattgttatgttcatgattattctatttgccaacatctctgcttct |
396 |
Q |
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| T |
46895751 |
ctgttcatgaaaacatttgagacttgttatccaattgttatgttcatgattattctatttgccaacatctatgcttct |
46895828 |
T |
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