View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8816_high_2 (Length: 348)
Name: NF8816_high_2
Description: NF8816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8816_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 45978437 - 45978106
Alignment:
| Q |
1 |
cagtaatgaggaaactcaatacatttatatcatcatgaatacaatcaatacatacctctctcagaaattccttcaactgatcatcatggaaatcctgaac |
100 |
Q |
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| T |
45978437 |
cagtaatgaggaaactcaatacatttatatcatcatgaatacaatcaatacatacctctctcagaaattccttcaactgatcatcatggaaatcctgaac |
45978338 |
T |
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| Q |
101 |
tgttaaaactttgactgcaacatcctgcaatttataaaatagataaaccattcaaaacaaatatacacacacatggagacacaagcaaacatatagggtc |
200 |
Q |
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| T |
45978337 |
tgttaaaactttgactgcaacatcctgcaatttataaaatagataaaccattcaaaacaaatatacacacacatggagacacaagcaaacatatagggtg |
45978238 |
T |
|
| Q |
201 |
aggaagattcaatgttccatgataatattcaatgactgaaccaataaaattcaatatctacaaagagctgttgagaggagtatctatgacgagttactcc |
300 |
Q |
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| T |
45978237 |
aggaagattcaatattccatgataatattcaatgactgaaccaataaaattcaatatctacaaagagctgttgagaggagtatctatgacgagttactcc |
45978138 |
T |
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| Q |
301 |
tggagcgagtagatctccatacatacaaactg |
332 |
Q |
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| T |
45978137 |
tggagcgagtagatctccatacatacaaactg |
45978106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 28050199 - 28050260
Alignment:
| Q |
72 |
ttcaactgatcatcatggaaatcctgaactgttaaaactttgactgcaacatcctgcaattt |
133 |
Q |
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| T |
28050199 |
ttcaactgatcgtcatggaaattttgaactgataaaactttgacggcaacatcctgcaattt |
28050260 |
T |
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