View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8816_low_3 (Length: 287)
Name: NF8816_low_3
Description: NF8816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8816_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 1793544 - 1793280
Alignment:
| Q |
1 |
ctgtccaatttgtagtgaacaattatcatatcatatcatcatatcatagtttttatttggataccttctgctcaaacttttcgagcgtcaagtttaatca |
100 |
Q |
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| T |
1793544 |
ctgtccaatttgtagtgaacaaatatcatatcatattatcatatcgtagttttcatttggataccttctgctcaaacttttcgagtgtcaagtttaatca |
1793445 |
T |
|
| Q |
101 |
cttgatcaaaagcttaaaaagggattaagggtatttttgtcaacttatggagtagctgaaagtttatagggtgtagctagaaaaaatcgaatattattcc |
200 |
Q |
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||||||| |||| ||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||| |
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| T |
1793444 |
cttgatcgaaagtttaaaaagggactaagggtattttcgtcaacttatggagtagctgaacgtttatagggtgtagctaaaaaaaatcgaatactattcc |
1793345 |
T |
|
| Q |
201 |
tctattcattttagttatcgttttaatgctattatttgtaaaaaccagaatgcgcatatcatcca |
265 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
1793344 |
tctatccattttagttatcgttttaatgctattatttgtaaaaatcagaatgcgcatatcctcca |
1793280 |
T |
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