View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8816_low_4 (Length: 273)
Name: NF8816_low_4
Description: NF8816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8816_low_4 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 15 - 273
Target Start/End: Complemental strand, 15047558 - 15047298
Alignment:
| Q |
15 |
ctctctttggccttaaaataattctgaaaagagtttatggattggataagagttgatggacacagaaatccatgacaaaaa-tacaaatattgggttaga |
113 |
Q |
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| T |
15047558 |
ctctctttggccttaaaataattttgaaaagagtttatggattggataagagttgatggacacagaaatccatgaaaaaaaatacaaatattgggttaga |
15047459 |
T |
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| Q |
114 |
gacccattttctctagcaagtgacaatattaact-cattataatcatgacttaccttatcctcttcactagnnnnnnngtggtttccattcatatgtatg |
212 |
Q |
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| T |
15047458 |
gacccattttctctagcaagtgacaatattaacttcattataatcatgacttaccttatcctcttcactagtttttttgtggtttccattcatatgtgtg |
15047359 |
T |
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| Q |
213 |
tgatcttttgaagccattagaggagaacacaattattagcatgaaagtattgttcttaacc |
273 |
Q |
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| T |
15047358 |
tgatcttttgaagccattagaggagaacacaattattagcatgaaagtattgttcttaacc |
15047298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 29 - 169
Target Start/End: Original strand, 15214917 - 15215057
Alignment:
| Q |
29 |
aaaataattctgaaaagagtttatggattggataagagttgatggacacagaaatccatgacaaaaatacaaatattgggttagagacccattttctcta |
128 |
Q |
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| T |
15214917 |
aaaattattttgaaaagagttcacagattgaataagagttgatggacaccaaaatccatgaaaaaaatacatatattgagtctcacacccattttctcta |
15215016 |
T |
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| Q |
129 |
gcaagtgacaatattaactcattataatcatgacttacctt |
169 |
Q |
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| T |
15215017 |
ggaagtgacaagattaggttattataatcatggcttacctt |
15215057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 15066537 - 15066386
Alignment:
| Q |
18 |
tctttggccttaaaataattctgaaaagagtttatggattggataagagttgatggacacagaaatccatgacaaaaatacaaatattgggttagagacc |
117 |
Q |
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| T |
15066537 |
tctttggcatgaaaattattttgaaaagagttcacagattggataagagttgatggacaccaaaatccatgataaaaataaaaatattgagtatcacatc |
15066438 |
T |
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| Q |
118 |
cattttctctagcaagtgacaatattaactcattataatcatgacttacctt |
169 |
Q |
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| T |
15066437 |
cattttctctaggaagagacaagattaggttattataatcatggattacctt |
15066386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 169
Target Start/End: Complemental strand, 13033170 - 13033055
Alignment:
| Q |
54 |
gattggataagagttgatggacacagaaatccatgacaaaaatacaaatattgggttagagacccattttctctagcaagtgacaatattaactcattat |
153 |
Q |
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| T |
13033170 |
gattggataagatatgatggacaccaaaatccatgaaaaaaatacatatattcagtctcacacccattttctctaggaagtgacaagattaggttattat |
13033071 |
T |
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| Q |
154 |
aatcatgacttacctt |
169 |
Q |
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| T |
13033070 |
aatcatggattacctt |
13033055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 169
Target Start/End: Complemental strand, 15052324 - 15052181
Alignment:
| Q |
29 |
aaaataattctgaaaagagtttatggattggataagagttgatggacacagaaatccatgacaaaaatacaaatattgggttagagacc---cattttct |
125 |
Q |
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| T |
15052324 |
aaaattattttgaaaagagatcgtagattggataaatgtagatggacaccaaaattcatgataaaaatacaaatattgacttacagacccatcatcttct |
15052225 |
T |
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| Q |
126 |
ctagcaagtgacaatattaactcattataatcatgacttacctt |
169 |
Q |
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| T |
15052224 |
ctaggaagagacaagattaggttattataatcatggattacctt |
15052181 |
T |
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