View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8817_high_1 (Length: 384)
Name: NF8817_high_1
Description: NF8817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8817_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 10069371 - 10069740
Alignment:
| Q |
1 |
tgagacgattaactaaacgcaacgcagatactcacatgcctctttatcacgttgtctctgatcttaatcattcacctgtgttacaatatatacttaaaag |
100 |
Q |
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| T |
10069371 |
tgagacgattaactgaacgcaacgcagaaactcacatgcctctttgttatgttgtttctgatcttaatcattcacctgtgttacaatatatactcaaaag |
10069470 |
T |
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| Q |
101 |
tcaaaggtgtttgaacgatcgaggcctacactaaccatctaactatcggagcggatctagacttgtgttaactctaattcaannnnnnnattccttttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
10069471 |
tcaaaggtgtttgaacgatcgaggcctacactaaccatctaactatcggagcggatctagacttgtgttaactctaattcaatttttttattccttttta |
10069570 |
T |
|
| Q |
201 |
tnnnnnnnttcgatcaaaagttttcagtcatccacagctgcccggttggtggttggacagagtgtcacaacaatttacagcccatctctcttgtttcatt |
300 |
Q |
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| T |
10069571 |
taaaaaaattcgatcaaaagttttcagtcatccacagctgcccggttggtggttggacagagtgtcacaacaatttacagcccatctctcttgtttcatt |
10069670 |
T |
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| Q |
301 |
ttctttaatgttctcttcctttccaaggttttttaatagttctttgagtaaaataatcgagtttatatat |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10069671 |
ttctttaatgttctcttcctttccaaggttttttaatagttctttgagtaaaataatcgagtttatatat |
10069740 |
T |
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