View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8817_high_5 (Length: 251)
Name: NF8817_high_5
Description: NF8817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8817_high_5 |
 | |
|
| [»] scaffold0648 (1 HSPs) |
| | |
|
| [»] scaffold0640 (1 HSPs) |
| | |
|
| [»] scaffold0274 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 28)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 16677783 - 16678020
Alignment:
| Q |
1 |
tccacatagttggaagaacttgaaagatttaacttaccttaacttgtggggaaataggttgtttggtgaagtttcagtgcacctctttgagttgatacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16677783 |
tccacatagttggaagaacttgaaagatttaacttaccttaacttgtggggaaataggttgtttggtgaagtttcagtgcacctctttgagttgatacaa |
16677882 |
T |
|
| Q |
101 |
ttacaagatattaacttaggagaaaatgaattttctggaaccataccaattaagatgtcacaaaacttagaagttgttatattgagagctaaccattttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16677883 |
ttacaagatattaacttaggagaaaatgaattttctggaaccataccaattaagatgtcacaaaacttagaagttgttatattgagagctaaccattttg |
16677982 |
T |
|
| Q |
201 |
aaggaagtattccactacagttattcaatctctcttct |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16677983 |
aaggaagtattccactacagttattcaatctctcttct |
16678020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 18165729 - 18165963
Alignment:
| Q |
1 |
tccacatagttggaagaacttgaaagatttaacttaccttaacttgtggggaaataggttgtttggtgaagtttcagtgcacctctttgagttgatacaa |
100 |
Q |
| |
|
|||||||||||||||||| |||||| |||| | || ||| ||||||| | |||||| | ||||||||||||||| ||||| ||| || |||| ||| |
|
|
| T |
18165729 |
tccacatagttggaagaatttgaaaattttatatcacattagcttgtggagtaataggctatttggtgaagtttcattgcacttctccgatttgaaccaa |
18165828 |
T |
|
| Q |
101 |
ttacaagatattaacttaggagaaaatgaattttctggaaccataccaattaagatgtcacaaaacttagaagttgttatattgagagctaaccattttg |
200 |
Q |
| |
|
|| || || ||||| ||||||||||||||||||||||||||||||||| ||| |||||||| |||||||| || ||||||||||||||||| |||| |
|
|
| T |
18165829 |
ttggaaatcatgaacttgggagaaaatgaattttctggaaccataccaattttgatttcacaaaagttagaagtggtcatattgagagctaaccaatttg |
18165928 |
T |
|
| Q |
201 |
aaggaagtattccactacagttattcaatctctct |
235 |
Q |
| |
|
|||| | |||||||| ||| |||||||||||||| |
|
|
| T |
18165929 |
aagggactattccaccacaaatattcaatctctct |
18165963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 25463623 - 25463854
Alignment:
| Q |
1 |
tccacatagttggaagaacttgaaagatttaacttaccttaacttgtggggaaataggttgtttggtgaagtttcagtgcacctctttgagttgatacaa |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||| ||||||||||| |||||| | | |||||||||| ||| ||||||| ||| | || |||| |
|
|
| T |
25463623 |
tccacatggttggaagaacttgaaagatttacaatacattaacttgtggaataataggctatctggtgaagttctagtacacctctctgattggagacaa |
25463722 |
T |
|
| Q |
101 |
ttacaagatattaacttaggagaaaatgaattttctggaaccataccaattaagatgtcacaaaacttagaagttgttatattgagagctaaccattttg |
200 |
Q |
| |
|
|| || || ||||| |||||||||||||||||||||||||||||||| || ||| ||| | |||||||||| || ||||||||||| ||||| |||| |
|
|
| T |
25463723 |
ttggaaatcatgaacttgggagaaaatgaattttctggaaccataccaatgaacatgccactatacttagaagtggtcatattgagagcaaaccaatttg |
25463822 |
T |
|
| Q |
201 |
aaggaagtattccactacagttattcaatctc |
232 |
Q |
| |
|
|||| | |||||||| ||| ||||||||||| |
|
|
| T |
25463823 |
aagggaatattccaccacaactattcaatctc |
25463854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 14895817 - 14895580
Alignment:
| Q |
1 |
tccacatagttggaagaacttgaaagatttaacttaccttaacttgtggggaaataggttgtttggtgaagtttcagtgcacctctttgagttgatacaa |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||| ||| |||||| |||||||| ||| |||||||||| |||||||||| | | |||| | | |
|
|
| T |
14895817 |
tccacatagttggaagaacttgacagatttacaatacattatcttgtgtagaaataggctgtctggtgaagttctagtgcacctcgctaatttgaaagat |
14895718 |
T |
|
| Q |
101 |
ttacaagatattaacttaggagaaaatgaattttctggaaccataccaattaagatgtcacaaaacttagaagttgttatattgagagctaaccattttg |
200 |
Q |
| |
|
|||| | | || ||| |||||||||||||||| |||||| ||||||| | |||||||||| ||||| |||| |||||||||||| ||||||| |||| |
|
|
| T |
14895717 |
ttacgatacatgttcttgggagaaaatgaattttatggaactataccaaccatgatgtcacaatacttacaagtggttatattgagatctaaccaatttg |
14895618 |
T |
|
| Q |
201 |
aaggaagtattccactacagttattcaatctctcttct |
238 |
Q |
| |
|
|||| | |||||||| ||| |||||||||||| ||||| |
|
|
| T |
14895617 |
aagggaatattccaccacaattattcaatctcacttct |
14895580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 119 - 236
Target Start/End: Original strand, 19381584 - 19381701
Alignment:
| Q |
119 |
ggagaaaatgaattttctggaaccataccaattaagatgtcacaaaacttagaagttgttatattgagagctaaccattttgaaggaagtattccactac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || | ||| ||||||||||| |||| ||||||||||||||||| |||||||| | |||||||| || |
|
|
| T |
19381584 |
ggagaaaatgaattttctggaaccataccaatgaacttatcagaaaacttagaaattgtcatattgagagctaaccaatttgaagggaatattccaccac |
19381683 |
T |
|
| Q |
219 |
agttattcaatctctctt |
236 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
19381684 |
aattattcaatctctctt |
19381701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 113 - 236
Target Start/End: Original strand, 19437643 - 19437766
Alignment:
| Q |
113 |
aacttaggagaaaatgaattttctggaaccataccaattaagatgtcacaaaacttagaagttgttatattgagagctaaccattttgaaggaagtattc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||| || |||||||||||||| | |||||||| | ||||| |
|
|
| T |
19437643 |
aacttaggagaaaatgaattttctggaaccataccaatcatgatgtcacaaaacttaaaagtggtcatattgagagctaataaatttgaagggactattc |
19437742 |
T |
|
| Q |
213 |
cactacagttattcaatctctctt |
236 |
Q |
| |
|
| | ||| ||||||||||||||| |
|
|
| T |
19437743 |
cgcaacaactattcaatctctctt |
19437766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 18116538 - 18116769
Alignment:
| Q |
1 |
tccacatagttggaagaacttgaaagatttaacttaccttaacttgtggggaaataggttgtttggtgaagtttcagtgcacctctttgagttgatacaa |
100 |
Q |
| |
|
|||||||||||||||||||||| || ||||| |||| ||||||||||| | ||||| ||| |||||| ||| ||| |||||| || | || |||| |
|
|
| T |
18116538 |
tccacatagttggaagaacttggaatatttattttacattaacttgtggagtaatagactgtctggtgaggttctagtaaacctctccgattggagacaa |
18116637 |
T |
|
| Q |
101 |
ttacaagatattaacttaggagaaaatgaattttctggaaccataccaattaagatgtcacaaaacttagaagttgttatattgagagctaaccattttg |
200 |
Q |
| |
|
|| ||| || ||||| |||||||||||||||||||||||||||||| | || || ||||| | |||||||| || ||| |||||| |||||| |||| |
|
|
| T |
18116638 |
ttgcaattcatgaacttgggagaaaatgaattttctggaaccataccattgaacataccacaatatttagaagtagtcatactgagaggtaaccaatttg |
18116737 |
T |
|
| Q |
201 |
aaggaagtattccactacagttattcaatctc |
232 |
Q |
| |
|
|||| ||||||||| ||| |||||||||||| |
|
|
| T |
18116738 |
aagggagtattccaacacaattattcaatctc |
18116769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 113 - 236
Target Start/End: Original strand, 18147515 - 18147638
Alignment:
| Q |
113 |
aacttaggagaaaatgaattttctggaaccataccaattaagatgtcacaaaacttagaagttgttatattgagagctaaccattttgaaggaagtattc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||| || |||||||||||||| | |||||||| | ||||| |
|
|
| T |
18147515 |
aacttaggagaaaatgaattttctggaaccataccaatcatgatgtcacaaaacttactagtggtcatattgagagctaataaatttgaagggactattc |
18147614 |
T |
|
| Q |
213 |
cactacagttattcaatctctctt |
236 |
Q |
| |
|
||| ||| ||||||| ||||||| |
|
|
| T |
18147615 |
cacaacaactattcaacctctctt |
18147638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 119 - 236
Target Start/End: Original strand, 19376313 - 19376430
Alignment:
| Q |
119 |
ggagaaaatgaattttctggaaccataccaattaagatgtcacaaaacttagaagttgttatattgagagctaaccattttgaaggaagtattccactac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| | | || |||||||||||||| | |||||||| | |||||||| || |
|
|
| T |
19376313 |
ggagaaaatgaattttctggaaccataccaatcaagatgtcacaaaacttatatttggtcatattgagagctaataaatttgaagggactattccacaac |
19376412 |
T |
|
| Q |
219 |
agttattcaatctctctt |
236 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
19376413 |
aactattcaatctctctt |
19376430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 119 - 231
Target Start/End: Original strand, 19400417 - 19400529
Alignment:
| Q |
119 |
ggagaaaatgaattttctggaaccataccaattaagatgtcacaaaacttagaagttgttatattgagagctaaccattttgaaggaagtattccactac |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||||| || | |||||||||||||||||||| ||| ||||||||||||| |||||||| | ||||||| || |
|
|
| T |
19400417 |
ggagaaaatgaattttcgggaaccataccaatcaacttttcacaaaacttagaagttgtcatactgagagctaaccaatttgaagggactattccaacac |
19400516 |
T |
|
| Q |
219 |
agttattcaatct |
231 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
19400517 |
aattattcaatct |
19400529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 119 - 235
Target Start/End: Original strand, 19414875 - 19414991
Alignment:
| Q |
119 |
ggagaaaatgaattttctggaaccataccaattaagatgtcacaaaacttagaagttgttatattgagagctaaccattttgaaggaagtattccactac |
218 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| | ||||||||| ||||||||||| || |||||||||| ||||| |||||||| | |||||||| || |
|
|
| T |
19414875 |
ggagaaaatgaattttatggaaccataccaatcatgatgtcacagaacttagaagtggtcatattgagagataaccgatttgaagggactattccaccac |
19414974 |
T |
|
| Q |
219 |
agttattcaatctctct |
235 |
Q |
| |
|
|| |||| ||||||||| |
|
|
| T |
19414975 |
agctatttaatctctct |
19414991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 113 - 231
Target Start/End: Original strand, 17950517 - 17950635
Alignment:
| Q |
113 |
aacttaggagaaaatgaattttctggaaccataccaattaagatgtcacaaaacttagaagttgttatattgagagctaaccattttgaaggaagtattc |
212 |
Q |
| |
|
||||| ||||||||||||||||||| ||| |||||||| || | |||||||| ||||||||||| ||||||||||||||||| || ||||||| ||||| |
|
|
| T |
17950517 |
aacttgggagaaaatgaattttctgcaacaataccaatcaatttatcacaaaaattagaagttgtcatattgagagctaaccaattagaaggaactattc |
17950616 |
T |
|
| Q |
213 |
cactacagttattcaatct |
231 |
Q |
| |
|
|| ||| ||||||||||| |
|
|
| T |
17950617 |
caacacaattattcaatct |
17950635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 113 - 227
Target Start/End: Original strand, 18109124 - 18109238
Alignment:
| Q |
113 |
aacttaggagaaaatgaattttctggaaccataccaattaagatgtcacaaaacttagaagttgttatattgagagctaaccattttgaaggaagtattc |
212 |
Q |
| |
|
||||| ||||||||||||||||||| ||| |||||||| || | |||||||| ||||||||||| ||||||||||||||||| |||||||||| ||||| |
|
|
| T |
18109124 |
aacttgggagaaaatgaattttctgcaacaataccaatcaatttatcacaaaaattagaagttgtcatattgagagctaaccaatttgaaggaactattc |
18109223 |
T |
|
| Q |
213 |
cactacagttattca |
227 |
Q |
| |
|
|| ||| ||||||| |
|
|
| T |
18109224 |
caacacaattattca |
18109238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 119 - 235
Target Start/End: Complemental strand, 18873187 - 18873071
Alignment:
| Q |
119 |
ggagaaaatgaattttctggaaccataccaattaagatgtcacaaaacttagaagttgttatattgagagctaaccattttgaaggaagtattccactac |
218 |
Q |
| |
|
|||||||||||||||||||||| ||||||| | | ||||||||||||| ||||||| || ||||||||||||||||| |||||||| | |||| ||| || |
|
|
| T |
18873187 |
ggagaaaatgaattttctggaaacataccattcatgatgtcacaaaacctagaagtagtcatattgagagctaaccaatttgaagggaatatttcaccac |
18873088 |
T |
|
| Q |
219 |
agttattcaatctctct |
235 |
Q |
| |
|
| |||| ||||||||| |
|
|
| T |
18873087 |
aactatttaatctctct |
18873071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 19464929 - 19465140
Alignment:
| Q |
1 |
tccacatagttggaagaacttgaaagatttaacttaccttaacttgtggggaaataggttgtttggtgaagtttcagtgcacctctttgagttgatacaa |
100 |
Q |
| |
|
|||| |||||||||||||||| || |||| |||| ||||||||||| | |||||| | | |||||||||||| ||||| ||| | | |||| ||| |
|
|
| T |
19464929 |
tccatatagttggaagaactt---aggattaaattacattaacttgtggagtaataggctatctggtgaagtttcgttgcacttctctaatttgaaccaa |
19465025 |
T |
|
| Q |
101 |
ttacaagatattaacttaggagaaaatgaattttctggaaccataccaattaagatgtcacaaaacttagaagttgttatattgagagctaaccattttg |
200 |
Q |
| |
|
|| || | || ||||| || |||||||||||||||||||||||||| || ||| |||||| |||||||||| || ||||||||||||||||| |||| |
|
|
| T |
19465026 |
ttggaaaacatgaacttgggcgaaaatgaattttctggaaccatacctatcttgatttcacaagacttagaagtggtcatattgagagctaaccaatttg |
19465125 |
T |
|
| Q |
201 |
aaggaagtattccac |
215 |
Q |
| |
|
|||| | |||||||| |
|
|
| T |
19465126 |
aagggactattccac |
19465140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 19461760 - 19461993
Alignment:
| Q |
1 |
tccacatagttggaagaacttgaaagatttaacttaccttaacttgtggggaaataggttgtttggtgaagtttcagtgcacctctttgagttgatacaa |
100 |
Q |
| |
|
|||||||||||||||||||||| || ||||| |||| ||||||||||| | ||||| ||| |||||| ||| ||| |||||| || | || || | |
|
|
| T |
19461760 |
tccacatagttggaagaacttggaatatttattttacattaacttgtggagtaatagactgtctggtgaggttctagtaaacctctccgattggagacga |
19461859 |
T |
|
| Q |
101 |
ttacaagatattaacttaggagaaaatgaattttctggaaccataccaattaagatgtcacaaaacttagaag--ttgttatattgagagctaaccattt |
198 |
Q |
| |
|
|| ||| || ||||| |||||||||||||||||||||||||||||| | || || ||||| | ||||||| || |||| |||||| |||||| || |
|
|
| T |
19461860 |
ttgcaattcatgaacttgggagaaaatgaattttctggaaccataccattgaacataccacaatatttagaagtattcatatactgagaggtaaccaatt |
19461959 |
T |
|
| Q |
199 |
tgaaggaagtattccactacagttattcaatctc |
232 |
Q |
| |
|
|||||| ||||||||| ||| |||||||||||| |
|
|
| T |
19461960 |
tgaagggagtattccaacacaattattcaatctc |
19461993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 238
Target Start/End: Complemental strand, 17726912 - 17726727
Alignment:
| Q |
53 |
aataggttgtttggtgaagtttcagtgcacctctttgagttgatacaattacaagatattaacttaggagaaaatgaattttctggaaccataccaatta |
152 |
Q |
| |
|
|||||| ||| |||||||||| || ||||||| ||| |||| |||||| ||| | |||| || |||||||||||||||||||||| ||||||| | |
|
|
| T |
17726912 |
aataggctgtctggtgaagttctaggacacctctctgatttgaaacaattgcaacacattattttgggagaaaatgaattttctggaaacataccagtag |
17726813 |
T |
|
| Q |
153 |
agatgtcacaaaacttagaagttgttatattgagagctaaccattttgaaggaagtattccactacagttattcaatctctcttct |
238 |
Q |
| |
|
||||||||||| |||||||| | || |||||| ||| ||| ||||||||||| |||||| ||| ||||||||||||||||| |
|
|
| T |
17726812 |
agatgtcacaacacttagaaatggtcatattgggaggtaatcattttgaagggcctattcctgcacaactattcaatctctcttct |
17726727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 99 - 236
Target Start/End: Original strand, 18016693 - 18016830
Alignment:
| Q |
99 |
aattacaagatattaacttaggagaaaatgaattttctggaaccataccaattaagatgtcacaaaacttagaagttgttatattgagagctaaccattt |
198 |
Q |
| |
|
||||||| || || ||||| ||| |||||||||||||||||| ||||||| | |||||||||||||||| ||| || ||||||||||| || | || |
|
|
| T |
18016693 |
aattacaggacatgaacttgggaaaaaatgaattttctggaaacataccagtagggatgtcacaaaacttaagagtggtcatattgagagccaataaatt |
18016792 |
T |
|
| Q |
199 |
tgaaggaagtattccactacagttattcaatctctctt |
236 |
Q |
| |
|
|||||| | |||||||| ||| |||||||||||||||| |
|
|
| T |
18016793 |
tgaagggattattccacgacaattattcaatctctctt |
18016830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 238
Target Start/End: Complemental strand, 19028141 - 19027956
Alignment:
| Q |
53 |
aataggttgtttggtgaagtttcagtgcacctctttgagttgatacaattacaagatattaacttaggagaaaatgaattttctggaaccataccaatta |
152 |
Q |
| |
|
|||||| ||| |||||||||| || ||||||| ||| |||| |||||| ||| | |||| || |||||||||||||||||||||| ||||||| | |
|
|
| T |
19028141 |
aataggctgtctggtgaagttctaggacacctctctgatttgaaacaattgcaacacattattttgggagaaaatgaattttctggaaacataccagtag |
19028042 |
T |
|
| Q |
153 |
agatgtcacaaaacttagaagttgttatattgagagctaaccattttgaaggaagtattccactacagttattcaatctctcttct |
238 |
Q |
| |
|
||||||||||| |||||||| | || |||||| ||| ||| ||||||||||| |||||| ||| ||||||||||||||||| |
|
|
| T |
19028041 |
agatgtcacaacacttagaaatggtcatattgggaggtaatcattttgaagggcctattcctgcacaactattcaatctctcttct |
19027956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 234
Target Start/End: Original strand, 17942645 - 17942760
Alignment:
| Q |
119 |
ggagaaaatgaattttctggaaccataccaattaagatgtcacaaaacttagaagttgttatattgagagctaaccattttgaaggaagtattccactac |
218 |
Q |
| |
|
||||||||||| |||| ||||||||||||||| | | |||||||||||| |||| || ||||||||||||||||| |||||||| | |||||| | || |
|
|
| T |
17942645 |
ggagaaaatgagttttttggaaccataccaatcagcttatcacaaaacttacaagtggtcatattgagagctaaccaatttgaagggactattccgcaac |
17942744 |
T |
|
| Q |
219 |
agttattcaatctctc |
234 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
17942745 |
aactattcaatctctc |
17942760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 19334582 - 19334817
Alignment:
| Q |
1 |
tccacatagttggaagaacttgaaagatttaacttaccttaacttgtggggaaataggttgtttggtgaagtttcagtgcacctctttgagttgatacaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||| || | ||| ||| | ||| | |||||| ||| |||||||||| || ||| |||| ||| | || |||| |
|
|
| T |
19334582 |
tccacatagttggaagaacttgaaagaactatcactcctgaacctatggagtaataggctgtctggtgaagttcaagagcatctctctgattggaaacaa |
19334681 |
T |
|
| Q |
101 |
ttacaagatattaacttaggagaaaatgaattttctggaaccataccaattaagatgtcacaaaacttagaagttgttatattgagagctaaccattttg |
200 |
Q |
| |
|
|| || || || || |||||||||||||||||||||| |||||||| |||||||||||||||| || | | ||||||||||| || || |||| |
|
|
| T |
19334682 |
ttgagagtcataaatttgggagaaaatgaattttctggaagcataccaacagggatgtcacaaaacttacaactgatcatattgagagccaatcaatttg |
19334781 |
T |
|
| Q |
201 |
aaggaagtattccactacagttattcaatctctctt |
236 |
Q |
| |
|
|||| | |||||||| ||| ||||||||||||||| |
|
|
| T |
19334782 |
aagggactattccacaacaactattcaatctctctt |
19334817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 236
Target Start/End: Original strand, 19352077 - 19352200
Alignment:
| Q |
113 |
aacttaggagaaaatgaattttctggaaccataccaattaagatgtcacaaaacttagaagttgttatattgagagctaaccattttgaaggaagtattc |
212 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||| | ||||||||||||||||| ||| || ||||| ||||| || | |||||||| | ||||| |
|
|
| T |
19352077 |
aacttgggagaaaatgaattttctggaaacataccggtagggatgtcacaaaacttagtagtggtcatatttagagccaataaatttgaagggattattc |
19352176 |
T |
|
| Q |
213 |
cactacagttattcaatctctctt |
236 |
Q |
| |
|
||| ||| |||||||||||||||| |
|
|
| T |
19352177 |
cacaacaattattcaatctctctt |
19352200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 123 - 236
Target Start/End: Original strand, 19393844 - 19393957
Alignment:
| Q |
123 |
aaaatgaattttctggaaccataccaattaagatgtcacaaaacttagaagttgttatattgagagctaaccattttgaaggaagtattccactacagtt |
222 |
Q |
| |
|
|||||||||||||||||| ||||||| || |||| |||||||||||| ||| || ||||||||||| || || |||||||| | |||||||| ||| | |
|
|
| T |
19393844 |
aaaatgaattttctggaaacataccagttgggatgccacaaaacttagtagtggtcatattgagagccaatcaatttgaaggtactattccacaacaact |
19393943 |
T |
|
| Q |
223 |
attcaatctctctt |
236 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
19393944 |
attcaatatctctt |
19393957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 231
Target Start/End: Original strand, 19439359 - 19439447
Alignment:
| Q |
143 |
ataccaattaagatgtcacaaaacttagaagttgttatattgagagctaaccattttgaaggaagtattccactacagttattcaatct |
231 |
Q |
| |
|
|||||||| | ||||||||||||||||| ||| || |||||||||| |||||| |||||||||| |||||||| ||| |||||||||| |
|
|
| T |
19439359 |
ataccaatcatgatgtcacaaaacttaggagtggtaatattgagagataaccaatttgaaggaactattccacaacaactattcaatct |
19439447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 119 - 204
Target Start/End: Original strand, 19425378 - 19425463
Alignment:
| Q |
119 |
ggagaaaatgaattttctggaaccataccaattaagatgtcacaaaacttagaagttgttatattgagagctaaccattttgaagg |
204 |
Q |
| |
|
||||||||| ||||||| |||| ||||||||| || | |||||||| |||||||| || ||||||||||||||||| |||||||| |
|
|
| T |
19425378 |
ggagaaaataaattttcaggaatcataccaatgaacttatcacaaaaattagaagtcgtcatattgagagctaaccaatttgaagg |
19425463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 204
Target Start/End: Original strand, 18104035 - 18104122
Alignment:
| Q |
117 |
taggagaaaatgaattttctggaaccataccaattaagatgtcacaaaacttagaagttgttatattgagagctaaccattttgaagg |
204 |
Q |
| |
|
||||||||||||||||||||||||| |||||| | |||||||||||||||||||| | ||||||||||| || || |||||||| |
|
|
| T |
18104035 |
taggagaaaatgaattttctggaactataccagtaggtatgtcacaaaacttagaagtgatcatattgagagccaatcaatttgaagg |
18104122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 235
Target Start/End: Original strand, 19354415 - 19354522
Alignment:
| Q |
128 |
gaattttctggaaccataccaattaagatgtcacaaaacttagaagttgttatattgagagctaaccattttgaaggaagtattccactacagttattca |
227 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||| |||| ||| || ||||||||||| ||||| |||||||| | ||| |||| ||| |||| | |
|
|
| T |
19354415 |
gaattttctggaaccataccaatcaaaatgtcacaatccttaacagtggtcatattgagagccaaccaatttgaagggaatatcccacaacaactattta |
19354514 |
T |
|
| Q |
228 |
atctctct |
235 |
Q |
| |
|
|||||||| |
|
|
| T |
19354515 |
atctctct |
19354522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 19425260 - 19425290
Alignment:
| Q |
1 |
tccacatagttggaagaacttgaaagattta |
31 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
19425260 |
tccacatagttggaagaacttgaaagattta |
19425290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 3531 - 3296
Alignment:
| Q |
1 |
tccacatagttggaagaacttgaaagatttaacttaccttaacttgtggggaaataggttgtttggtgaagtttcagtgcacctctttgagttgatacaa |
100 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||| ||| ||||||| | |||| | ||| |||||||||| || ||||||| ||| | || |||| |
|
|
| T |
3531 |
tccacatagttggaagaacttgttagaattaacttacattatcttgtggagtaataagctgtctggtgaagttctaggacacctctctgattggaaacaa |
3432 |
T |
|
| Q |
101 |
ttacaagatattaacttaggagaaaatgaattttctggaaccataccaattaagatgtcacaaaacttagaagttgttatattgagagctaaccattttg |
200 |
Q |
| |
|
|| ||| || || || | ||||||||| |||||||||||||||||||| || ||| ||||| | ||||||||||| ||||| ||||||||||| || | |
|
|
| T |
3431 |
ttgcaattcatgaatttggaagaaaatgagttttctggaaccataccaatcaacatgccacaatatttagaagttgtcatattaagagctaaccaattcg |
3332 |
T |
|
| Q |
201 |
aaggaagtattccactacagttattcaatctctctt |
236 |
Q |
| |
|
|||| | ||||||| ||| |||||||||||||||| |
|
|
| T |
3331 |
aagggactattccatcacaattattcaatctctctt |
3296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 5976 - 6211
Alignment:
| Q |
1 |
tccacatagttggaagaacttgaaagatttaacttaccttaacttgtggggaaataggttgtttggtgaagtttcagtgcacctctttgagttgatacaa |
100 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||| ||| ||||||| | |||| | ||| |||||||||| || ||||||| ||| | || |||| |
|
|
| T |
5976 |
tccacatagttggaagaacttgttagaattaacttacattatcttgtggagtaataagctgtctggtgaagttctaggacacctctctgattggaaacaa |
6075 |
T |
|
| Q |
101 |
ttacaagatattaacttaggagaaaatgaattttctggaaccataccaattaagatgtcacaaaacttagaagttgttatattgagagctaaccattttg |
200 |
Q |
| |
|
|| ||| || || || | ||||||||| |||||||||||||||||||| || ||| ||||| | ||||||||||| ||||| ||||||||||| || | |
|
|
| T |
6076 |
ttgcaattcatgaatttggaagaaaatgagttttctggaaccataccaatcaacatgccacaatatttagaagttgtcatattaagagctaaccaattcg |
6175 |
T |
|
| Q |
201 |
aaggaagtattccactacagttattcaatctctctt |
236 |
Q |
| |
|
|||| | ||||||| ||| |||||||||||||||| |
|
|
| T |
6176 |
aagggactattccatcacaattattcaatctctctt |
6211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 3000 - 2765
Alignment:
| Q |
1 |
tccacatagttggaagaacttgaaagatttaacttaccttaacttgtggggaaataggttgtttggtgaagtttcagtgcacctctttgagttgatacaa |
100 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||| ||| ||||||| | |||| | ||| |||||||||| || ||||||| ||| | || |||| |
|
|
| T |
3000 |
tccacatagttggaagaacttgttagaattaacttacattatcttgtggagtaataagctgtctggtgaagttctaggacacctctctgattggaaacaa |
2901 |
T |
|
| Q |
101 |
ttacaagatattaacttaggagaaaatgaattttctggaaccataccaattaagatgtcacaaaacttagaagttgttatattgagagctaaccattttg |
200 |
Q |
| |
|
|| ||| || || || | ||||||||| |||||||||||||||||||| || ||| ||||| | ||||||||||| ||||| ||||||||||| || | |
|
|
| T |
2900 |
ttgcaattcatgaatttggaagaaaatgagttttctggaaccataccaatcaacatgccacaatatttagaagttgtcatattaagagctaaccaattcg |
2801 |
T |
|
| Q |
201 |
aaggaagtattccactacagttattcaatctctctt |
236 |
Q |
| |
|
|||| | ||||||| ||| |||||||||||||||| |
|
|
| T |
2800 |
aagggactattccatcacaattattcaatctctctt |
2765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 119 - 236
Target Start/End: Original strand, 21315 - 21431
Alignment:
| Q |
119 |
ggagaaaatgaattttctggaaccataccaattaagatgtcacaaaacttagaagttgttatattgagagctaaccattttgaaggaagtattccactac |
218 |
Q |
| |
|
||||||||||| |||||||||||||||||||| || ||| ||||| | |||||||| || ||||| ||||||||||| || ||||| | |||||||| || |
|
|
| T |
21315 |
ggagaaaatgagttttctggaaccataccaatcaacatgccacaatatttagaagtggtcatattaagagctaaccaattcgaagg-actattccaccac |
21413 |
T |
|
| Q |
219 |
agttattcaatctctctt |
236 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
21414 |
aattattcaatctctctt |
21431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 15536106 - 15536341
Alignment:
| Q |
1 |
tccacatagttggaagaacttgaaagatttaacttaccttaacttgtggggaaataggttgtttggtgaagtttcagtgcacctctttgagttgatacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| || || || | | ||| ||||| ||||| |||| |||||||||| || ||||||||| || | || |||| |
|
|
| T |
15536106 |
tccacatagttggaagaacttgaatgaattgacagtcatgaacctgtggaataatagtttgtctggtgaagttccaatgcacctctctgcttcgaaacaa |
15536205 |
T |
|
| Q |
101 |
ttacaagatattaacttaggagaaaatgaattttctggaaccataccaattaagatgtcacaaaacttagaagttgttatattgagagctaaccattttg |
200 |
Q |
| |
|
|| ||| || ||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||| ||| || ||||||||| | || | |||| |
|
|
| T |
15536206 |
ttgcaaaccatgaacttgggagaaaatgaattttctggaaccataccaatcatgatgtcacaaaacttagtagtggtcatattgagaaccaataaatttg |
15536305 |
T |
|
| Q |
201 |
aaggaagtattccactacagttattcaatctctctt |
236 |
Q |
| |
|
|||| | |||||| | ||| |||||||||||||||| |
|
|
| T |
15536306 |
aagggattattccgccacaattattcaatctctctt |
15536341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 117 - 235
Target Start/End: Complemental strand, 2709899 - 2709781
Alignment:
| Q |
117 |
taggagaaaatgaattttctggaaccataccaattaagatgtcacaaaacttagaagttgttatattgagagctaaccattttgaaggaagtattccact |
216 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||| ||| | || ||||| | ||||||||||||||||| ||| |||| | ||||||| |
|
|
| T |
2709899 |
taggagaaaatgaattttctggaactataccaatcaagatgtcgcaagatttgaaagttctcatattgagagctaaccaatttaaagggactattccaac |
2709800 |
T |
|
| Q |
217 |
acagttattcaatctctct |
235 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
2709799 |
acaattattcaatctctct |
2709781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 8460118 - 8460343
Alignment:
| Q |
1 |
tccacatagttggaagaacttgaaagatttaacttaccttaacttgtggggaaataggttgtttggtgaagtttcagtgcacctctttgagttgatacaa |
100 |
Q |
| |
|
|||||||| ||||| || | || || ||||| |||| ||||||| ||| | |||||| | | ||| |||||| | ||| |||||||||| |||| |||| |
|
|
| T |
8460118 |
tccacatatttggacgagcctggaacatttattttacattaacttatggagtaataggctatctggcgaagttccggtggacctctttgatttgaaacaa |
8460217 |
T |
|
| Q |
101 |
ttacaagatattaacttaggagaaaatgaattttctggaaccataccaattaagatgtcacaaaacttagaagttgttatattgagagctaaccattttg |
200 |
Q |
| |
|
|| || |||||||| ||||||||| |||||||||||||||| ||||| || ||||||| | |||||||| || ||||||||||| ||||| |||| |
|
|
| T |
8460218 |
ttggaaatgattaacttgggagaaaatcaattttctggaaccattccaatgaacatgtcacggtatttagaagtggtcatattgagagccaaccaatttg |
8460317 |
T |
|
| Q |
201 |
aaggaagtattccactacagttattc |
226 |
Q |
| |
|
|||| | |||||||| |||||||||| |
|
|
| T |
8460318 |
aaggcaatattccaccacagttattc |
8460343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 236
Target Start/End: Complemental strand, 13666265 - 13666142
Alignment:
| Q |
113 |
aacttaggagaaaatgaattttctggaaccataccaattaagatgtcacaaaacttagaagttgttatattgagagctaaccattttgaaggaagtattc |
212 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||| ||| |||| |||||| |||| || |||||||||| || | |||||||| ||||||| |
|
|
| T |
13666265 |
aacttaggagaaaatgaatttaatggaaccataacaatcttgatttcaccaaactttcaagtggtcatattgagagaaaataaatttgaaggcagtattc |
13666166 |
T |
|
| Q |
213 |
cactacagttattcaatctctctt |
236 |
Q |
| |
|
| | ||| |||| |||||||||| |
|
|
| T |
13666165 |
ccccacaactatttaatctctctt |
13666142 |
T |
|
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