View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8817_high_6 (Length: 240)

Name: NF8817_high_6
Description: NF8817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8817_high_6
NF8817_high_6
[»] chr3 (30 HSPs)
chr3 (1-222)||(16677528-16677744)
chr3 (4-222)||(18147139-18147361)
chr3 (8-222)||(14895863-14896081)
chr3 (3-124)||(25463466-25463582)
chr3 (8-124)||(17727010-17727121)
chr3 (8-124)||(19028239-19028350)
chr3 (9-163)||(18016399-18016548)
chr3 (8-130)||(18165566-18165683)
chr3 (8-163)||(18144567-18144717)
chr3 (8-163)||(19393526-19393676)
chr3 (8-131)||(19400135-19400253)
chr3 (8-54)||(17942435-17942481)
chr3 (8-127)||(18103759-18103873)
chr3 (70-222)||(19414493-19414654)
chr3 (15-222)||(19424996-19425207)
chr3 (8-50)||(17950317-17950359)
chr3 (8-50)||(18108924-18108966)
chr3 (10-222)||(19351702-19351917)
chr3 (8-121)||(19376041-19376149)
chr3 (163-222)||(19400017-19400076)
chr3 (3-123)||(19437375-19437490)
chr3 (8-54)||(19464837-19464883)
chr3 (170-222)||(25463359-25463411)
chr3 (187-222)||(17727193-17727228)
chr3 (187-222)||(19028422-19028457)
chr3 (163-222)||(19334318-19334377)
chr3 (15-53)||(18116447-18116485)
chr3 (71-124)||(19334425-19334478)
chr3 (9-53)||(19381375-19381419)
chr3 (6-54)||(19414665-19414713)
[»] scaffold0648 (1 HSPs)
scaffold0648 (71-163)||(3635-3727)
[»] chr6 (1 HSPs)
chr6 (8-54)||(13666423-13666469)
[»] scaffold0640 (1 HSPs)
scaffold0640 (71-123)||(5820-5872)
[»] scaffold0274 (1 HSPs)
scaffold0274 (71-123)||(3104-3156)
[»] chr8 (1 HSPs)
chr8 (13-53)||(8460027-8460067)
[»] chr4 (3 HSPs)
chr4 (163-219)||(2710208-2710264)
chr4 (8-45)||(2710052-2710089)
chr4 (81-130)||(15535943-15535992)


Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 16677744 - 16677528
Alignment:
Q  1 tcgggcaattggtgatatgttcgggagtcctcctgtgaaattattatgatccaatccaaccctaaccatgaacaatttaatgttaggttagatatgtctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||    
T  16677744 tcgggcaattggtgatatgttcgggagtcctcctgtgaaattattatgatccaa-----ccctaaccatgaacaatttaatgttaggttagatatgtctt 16677650  T
Q  101 cgaaaatggaattgtttgacaaaagaagttccacaaatattctttctgtaaggctcgagaactctacgaatgaaatgcctgagcttgataagtcgagata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16677649 cgaaaatggaattgtttgacaaaagaagttccacaaatattctttctgtaaggctcgagaactctacgaatgaaatgcctgagcttgataagtcgagata 16677550  T
Q  201 ttgcaatgacttttgtgtatat 222  Q
    ||||||||||||||||||||||    
T  16677549 ttgcaatgacttttgtgtatat 16677528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 18147361 - 18147139
Alignment:
Q  4 ggcaattggtgatatgttcgggagtcctcctgtgaaattattatgatccaatccaaccctaaccatgaacaatttaatgttaggttagatatgtcttcga 103  Q
    |||||||||||||||||| || ||||| ||||||||| |||| | ||||||   ||   |||  | |||||||| | |||||||||||||||||||||      
T  18147361 ggcaattggtgatatgtttggaagtccacctgtgaaactattgttatccaaa--aa---taatgaggaacaattcagtgttaggttagatatgtcttctg 18147267  T
Q  104 aaatggaattgtttgacaaaagaagttccacaaatattctttctgtaaggctcgagaac---------tctacgaatgaaatgcctgagcttgataagtc 194  Q
     ||| |||||||||||||||| ||||||   | ||||||||||| ||||||||||||||         |||||||||||||| |||||||||||||||||    
T  18147266 caatcgaattgtttgacaaaataagttcagtagatattctttctataaggctcgagaacttatttctatctacgaatgaaattcctgagcttgataagtc 18147167  T
Q  195 gagatattgcaatgacttttgtgtatat 222  Q
    ||||   |||| ||||||||||||||||    
T  18147166 gagaacatgcagtgacttttgtgtatat 18147139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 14895863 - 14896081
Alignment:
Q  8 attggtgatatgttcgggagtcctcctgtgaaattattatgatccaatccaaccctaaccatgaacaatttaatgttaggttagatatgtcttcgaaaat 107  Q
    |||||||||||||| |||||||||||||||||||| || ||     |||||||| |||  |  ||||||||| |||||||||||||||||||||   |||    
T  14895863 attggtgatatgtttgggagtcctcctgtgaaattgttgtg-----atccaaccttaaaaacaaacaatttagtgttaggttagatatgtcttcagcaat 14895957  T
Q  108 ggaattgtttgacaaaagaagttccacaaatattctttctgtaaggctcgagaac---------tctacgaatgaaatgcctgagcttgataagtcgaga 198  Q
     |||||||||| ||||| ||||||      ||||||||||  |||||||||||||         || || || ||||| |||||||| ||||||||||||    
T  14895958 cgaattgtttgtcaaaataagttcattgggtattctttctacaaggctcgagaacttatttctatccacaaacgaaattcctgagctcgataagtcgaga 14896057  T
Q  199 tattgcaatgacttttgtgtatat 222  Q
    | ||||| ||||||||||||||||    
T  14896058 tcttgcagtgacttttgtgtatat 14896081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 124
Target Start/End: Complemental strand, 25463582 - 25463466
Alignment:
Q  3 gggcaattggtgatatgttcgggagtcctcctgtgaaattattatgatccaatccaaccctaaccatgaacaatttaatgttaggttagatatgtcttcg 102  Q
    |||| ||||||||||| || || ||||||| ||||||||||||  |||||||     | |||||||||||||||||| ||||||||||||||||||| |     
T  25463582 gggccattggtgatatatttggaagtcctcttgtgaaattattgcgatccaa-----ctctaaccatgaacaatttagtgttaggttagatatgtctcca 25463488  T
Q  103 aaaatggaattgtttgacaaaa 124  Q
     |||| ||||||||||||||||    
T  25463487 gaaatcgaattgtttgacaaaa 25463466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 17727010 - 17727121
Alignment:
Q  8 attggtgatatgttcgggagtcctcctgtgaaattattatgatccaatccaaccctaaccatgaacaatttaatgttaggttagatatgtcttcgaaaat 107  Q
    |||||||||| ||| ||||||||||||||||||||||| ||||||||  |||   |||  | |||||| ||| ||||||||||||||||||||| | |||    
T  17727010 attggtgataggtttgggagtcctcctgtgaaattattgtgatccaa--caa---taagtaggaacaaattagtgttaggttagatatgtcttcaacaat 17727104  T
Q  108 ggaattgtttgacaaaa 124  Q
     ||||||||||||||||    
T  17727105 tgaattgtttgacaaaa 17727121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 19028239 - 19028350
Alignment:
Q  8 attggtgatatgttcgggagtcctcctgtgaaattattatgatccaatccaaccctaaccatgaacaatttaatgttaggttagatatgtcttcgaaaat 107  Q
    |||||||||| ||| ||||||||||||||||||||||| ||||||||  |||   |||  | |||||| ||| ||||||||||||||||||||| | |||    
T  19028239 attggtgataggtttgggagtcctcctgtgaaattattgtgatccaa--caa---taagtaggaacaaattagtgttaggttagatatgtcttcaacaat 19028333  T
Q  108 ggaattgtttgacaaaa 124  Q
     ||||||||||||||||    
T  19028334 tgaattgtttgacaaaa 19028350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 163
Target Start/End: Complemental strand, 18016548 - 18016399
Alignment:
Q  9 ttggtgatatgttcgggagtcctcctgtgaaattattatgatccaatccaaccctaaccatgaacaatttaatgttaggttagatatgtcttcgaaaatg 108  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||     || ||||   |||||||| | ||||||||||||||| |||||   |||     
T  18016548 ttggtgataggtttgggagtcctcctgtgaaattattatgatccaa-----ccttaacaccgaacaattaagtgttaggttagatatatcttcagcaatc 18016454  T
Q  109 gaattgtttgacaaaagaagttccacaaatattctttctgtaaggctcgagaact 163  Q
    |||||||||||||||| ||  |  |   ||||||||||| |||||||||||||||    
T  18016453 gaattgtttgacaaaacaatataaaaggatattctttctataaggctcgagaact 18016399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 130
Target Start/End: Complemental strand, 18165683 - 18165566
Alignment:
Q  8 attggtgatatgttcgggagtcctcctgtgaaattattatgatccaatccaaccctaaccatgaacaatttaatgttaggttagatatgtcttcgaaaat 107  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||| |  |    ||     ||||||||| ||||||||||||||||||||| | |||    
T  18165683 attggtgatatgtttgggagtcctcctgtgaaattattgtgatccaaacgtaagtcaa-----aacaatttagtgttaggttagatatgtcttcaacaat 18165589  T
Q  108 ggaattgtttgacaaaagaagtt 130  Q
     |||||||||||||||| |||||    
T  18165588 cgaattgtttgacaaaataagtt 18165566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 18144717 - 18144567
Alignment:
Q  8 attggtgatatgttcgggagtcctcctgtgaaattattatgatccaatccaaccctaaccatgaacaatttaatgttaggttagatatgtcttcgaaaat 107  Q
    ||||| |||||||| || |||||||||||||||||||| ||||||||     || ||   | |||||||||| |||||||||||||||||||||   |||    
T  18144717 attggcgatatgtttggtagtcctcctgtgaaattattgtgatccaa-----ccttatgtacgaacaatttagtgttaggttagatatgtcttcagcaat 18144623  T
Q  108 ggaattgtttgacaaaagaagttccacaaatattctttctgtaaggctcgagaact 163  Q
      ||||||||||||||| || |||   |  |||||||||| |||||||||||||||    
T  18144622 ccaattgtttgacaaaataatttcactaggtattctttctataaggctcgagaact 18144567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 19393676 - 19393526
Alignment:
Q  8 attggtgatatgttcgggagtcctcctgtgaaattattatgatccaatccaaccctaaccatgaacaatttaatgttaggttagatatgtcttcgaaaat 107  Q
    ||||| |||||||| ||||||||||||||||||||||| ||     |||||||| |||  |  |||||||||  ||||||||||||||||||||   |||    
T  19393676 attggagatatgtttgggagtcctcctgtgaaattattgtg-----atccaaccataaaaagaaacaatttagagttaggttagatatgtcttcagcaat 19393582  T
Q  108 ggaattgtttgacaaaagaagttccacaaatattctttctgtaaggctcgagaact 163  Q
     |||||||||||||||| || |||  |  ||||||||||| |||| || |||||||    
T  19393581 cgaattgtttgacaaaataatttcaccggatattctttctataagccttgagaact 19393526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 131
Target Start/End: Complemental strand, 19400253 - 19400135
Alignment:
Q  8 attggtgatatgttcgggagtcctcctgtgaaattattatgatccaatccaaccctaaccatgaacaatttaatgttaggttagatatgtcttcgaaaat 107  Q
    |||||||||||||| ||||||| |||||||||| |||| ||||||||     || |||   | ||||||||| |||||||||||||||||||||   |||    
T  19400253 attggtgatatgtttgggagtcttcctgtgaaactattgtgatccaa-----ccttaaaattaaacaatttagtgttaggttagatatgtcttcagcaat 19400159  T
Q  108 ggaattgtttgacaaaagaagttc 131  Q
     |||||||||||||||| ||||||    
T  19400158 agaattgtttgacaaaataagttc 19400135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 17942481 - 17942435
Alignment:
Q  8 attggtgatatgttcgggagtcctcctgtgaaattattatgatccaa 54  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  17942481 attggtgatatgttcgggagtcctcctgtgaaattattgtgatccaa 17942435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 18103873 - 18103759
Alignment:
Q  8 attggtgatatgttcgggagtcctcctgtgaaattattatgatccaatccaaccctaaccatgaacaatttaatgttaggttagatatgtcttcgaaaat 107  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||   ||  | |||  |  ||||||||| |||||| |||||||| ||||| |||||    
T  18103873 attggtgatatgtttgggagtcctcctgtgaaattattgtgatcca---ca--cttaaaaacaaacaatttagtgttagcttagatatatcttcaaaaat 18103779  T
Q  108 ggaattgtttgacaaaagaa 127  Q
      ||||||||||||||||||    
T  18103778 caaattgtttgacaaaagaa 18103759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 222
Target Start/End: Complemental strand, 19414654 - 19414493
Alignment:
Q  70 gaacaatttaatgttaggttagatatgtcttcgaaaatggaattgtttgacaaaagaagttccacaaatattctttctgtaaggctcgagaac------- 162  Q
    |||||||| | |||||||||||||||||||||   |||  ||||||||||||||  ||||||  || |||||| |||| ||||||||||||||           
T  19414654 gaacaattcagtgttaggttagatatgtcttctgcaatcaaattgtttgacaaataaagttcatcatatattccttctataaggctcgagaacttatttc 19414555  T
Q  163 --tctacgaatgaaatgcctgagcttgataagtcgagatattgcaatgacttttgtgtatat 222  Q
      |||||||||||||| || ||||| ||||||||||||   |||| | ||||||||||||||    
T  19414554 tatctacgaatgaaattcccgagctcgataagtcgagaacatgcagtaacttttgtgtatat 19414493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 19425207 - 19424996
Alignment:
Q  15 atatgttcgggagtcctcctgtgaaattattatgatccaatccaaccctaaccatgaacaatttaatgttaggttagatatgtcttcgaaaatggaattg 114  Q
    ||||||||||||||||||||||||||||||| | |||||||     |||||    |||||||||| ||||||||| |||||||||||   |||  |||||    
T  19425207 atatgttcgggagtcctcctgtgaaattattgttatccaat-----cctaaattggaacaatttagtgttaggttggatatgtcttcagcaatcaaattg 19425113  T
Q  115 tttgacaaaagaagttccacaaatattctttctgtaaggctcgagaac---------tctacgaatgaaatgcctgagcttgataagtcgagatattgca 205  Q
    |||||||||| ||| |   |   ||||||||||  |||||||||||||         | ||| |||||||| || ||||| ||||||||||||  |||||    
T  19425112 tttgacaaaataaggtgatctgttattctttctacaaggctcgagaacttatttctatgtaccaatgaaattcccgagctcgataagtcgagactttgca 19425013  T
Q  206 atgacttttgtgtatat 222  Q
     ||||||||||||||||    
T  19425012 gtgacttttgtgtatat 19424996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 17950359 - 17950317
Alignment:
Q  8 attggtgatatgttcgggagtcctcctgtgaaattattatgat 50  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  17950359 attggtgatatgttcgggagtcctcctgtgaaattattgtgat 17950317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 18108966 - 18108924
Alignment:
Q  8 attggtgatatgttcgggagtcctcctgtgaaattattatgat 50  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  18108966 attggtgatatgttcgagagtcctcctgtgaaattattatgat 18108924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 19351917 - 19351702
Alignment:
Q  10 tggtgatatgttcgggagtcctcctgtgaaattattatgatccaatccaaccctaaccatgaacaatttaatgttaggttagatatgtcttcgaaaatgg 109  Q
    |||||||| ||| ||||||||||||||||||||||| ||     |||||||| ||||    ||||||| | ||||||| |||||||||||||   ||||     
T  19351917 tggtgataggtttgggagtcctcctgtgaaattattgtg-----atccaaccttaactccaaacaattaagtgttagg-tagatatgtcttccgcaatga 19351824  T
Q  110 aattgtttgacaaaagaagttccacaaatattctttctgtaaggctcgagaac---------tctacgaatgaaatgcctgagcttgataagtcgagata 200  Q
    ||||||||||||| |  ||||    || |||||||||| ||||||||||||||         ||||| |||||||| || | ||| |||| ||||||||     
T  19351823 aattgtttgacaataatagtttataaagtattctttctataaggctcgagaacttatttctatctaccaatgaaattcccgtgctcgatatgtcgagatt 19351724  T
Q  201 ttgcaatgacttttgtgtatat 222  Q
    ||||| ||||||||||||||||    
T  19351723 ttgcagtgacttttgtgtatat 19351702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 19376149 - 19376041
Alignment:
Q  8 attggtgatatgttcgggagtcctcctgtgaaattattatgatccaatccaaccctaaccatgaacaatttaatgttaggttagatatgtcttcgaaaat 107  Q
    |||||||||||||| |||||||| |||||||||||||| ||     ||||||   |||| ||||||||   | |||||||||||||||||||||  ||||    
T  19376149 attggtgatatgtttgggagtccacctgtgaaattattgtg-----atccaaatgtaacaatgaacaagaaagtgttaggttagatatgtcttcagaaat 19376055  T
Q  108 ggaattgtttgaca 121  Q
     |||||||||||||    
T  19376054 tgaattgtttgaca 19376041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 19400076 - 19400017
Alignment:
Q  163 tctacgaatgaaatgcctgagcttgataagtcgagatattgcaatgacttttgtgtatat 222  Q
    ||||| || ||||| || ||||||||||||||||||| ||||| ||||||||||||||||    
T  19400076 tctacaaacgaaattcccgagcttgataagtcgagatgttgcagtgacttttgtgtatat 19400017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 123
Target Start/End: Complemental strand, 19437490 - 19437375
Alignment:
Q  3 gggcaattggtgatatgttcgggagtcctcctgtgaaattattatgatccaatccaaccctaaccatgaacaatttaatgttaggttagatatgtcttcg 102  Q
    |||||||| |||||||||| ||||||||||||  ||||||||| ||||||||   ||   |||    |||||||||| |||||||||||||||||||||     
T  19437490 gggcaattagtgatatgtttgggagtcctcctacgaaattattgtgatccaag--aa---taagatggaacaatttagtgttaggttagatatgtcttca 19437396  T
Q  103 aaaatggaattgtttgacaaa 123  Q
      ||| |||||||||||||||    
T  19437395 gcaatcgaattgtttgacaaa 19437375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 19464883 - 19464837
Alignment:
Q  8 attggtgatatgttcgggagtcctcctgtgaaattattatgatccaa 54  Q
    |||||||||||||| ||||||||||| ||||||||||| ||||||||    
T  19464883 attggtgatatgtttgggagtcctccagtgaaattattgtgatccaa 19464837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 25463411 - 25463359
Alignment:
Q  170 atgaaatgcctgagcttgataagtcgagatattgcaatgacttttgtgtatat 222  Q
    ||||||| || ||||| ||||||||||||||||||| |||||| |||||||||    
T  25463411 atgaaattcccgagctcgataagtcgagatattgcagtgacttctgtgtatat 25463359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 17727193 - 17727228
Alignment:
Q  187 gataagtcgagatattgcaatgacttttgtgtatat 222  Q
    ||||||||||||| ||||||||||||||||||||||    
T  17727193 gataagtcgagattttgcaatgacttttgtgtatat 17727228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 19028422 - 19028457
Alignment:
Q  187 gataagtcgagatattgcaatgacttttgtgtatat 222  Q
    ||||||||||||| ||||||||||||||||||||||    
T  19028422 gataagtcgagattttgcaatgacttttgtgtatat 19028457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 19334377 - 19334318
Alignment:
Q  163 tctacgaatgaaatgcctgagcttgataagtcgagatattgcaatgacttttgtgtatat 222  Q
    ||||| |||||||| || ||| ||||||| ||||||  ||||||||||||||||||||||    
T  19334377 tctaccaatgaaattcccgagtttgataactcgagaacttgcaatgacttttgtgtatat 19334318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 18116485 - 18116447
Alignment:
Q  15 atatgttcgggagtcctcctgtgaaattattatgatcca 53  Q
    ||||||| ||||||||||||||||||||||| |||||||    
T  18116485 atatgtttgggagtcctcctgtgaaattattgtgatcca 18116447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 19334478 - 19334425
Alignment:
Q  71 aacaatttaatgttaggttagatatgtcttcgaaaatggaattgtttgacaaaa 124  Q
    ||||||||| ||||||||| |||||||||||   ||| ||||||||||||||||    
T  19334478 aacaatttagtgttaggttggatatgtcttcagcaatcgaattgtttgacaaaa 19334425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 19381419 - 19381375
Alignment:
Q  9 ttggtgatatgttcgggagtcctcctgtgaaattattatgatcca 53  Q
    ||||||||||||| |||||||| | |||||||||||| |||||||    
T  19381419 ttggtgatatgtttgggagtccacttgtgaaattattgtgatcca 19381375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 19414713 - 19414665
Alignment:
Q  6 caattggtgatatgttcgggagtcctcctgtgaaattattatgatccaa 54  Q
    |||||||||||||||| || ||||| ||||||||| |||| ||||||||    
T  19414713 caattggtgatatgtttggaagtccacctgtgaaactattgtgatccaa 19414665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 163
Target Start/End: Original strand, 3635 - 3727
Alignment:
Q  71 aacaatttaatgttaggttagatatgtcttcgaaaatggaattgtttgacaaaagaagttccacaaatattctttctgtaaggctcgagaact 163  Q
    ||||||||| |||||||||||||||||||||   ||| |||||||||||||||  ||||||  |  |||  |||||| |||||||||||||||    
T  3635 aacaatttagtgttaggttagatatgtcttcagcaatcgaattgtttgacaaattaagttcatcggatacgctttctataaggctcgagaact 3727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 13666423 - 13666469
Alignment:
Q  8 attggtgatatgttcgggagtcctcctgtgaaattattatgatccaa 54  Q
    |||||||||||||| ||||||||||||||||| ||||| ||||||||    
T  13666423 attggtgatatgtttgggagtcctcctgtgaagttattgtgatccaa 13666469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 5872 - 5820
Alignment:
Q  71 aacaatttaatgttaggttagatatgtcttcgaaaatggaattgtttgacaaa 123  Q
    ||||||||| |||||||||||||||||||||   ||| |||||||||||||||    
T  5872 aacaatttagtgttaggttagatatgtcttcagcaatcgaattgtttgacaaa 5820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 3104 - 3156
Alignment:
Q  71 aacaatttaatgttaggttagatatgtcttcgaaaatggaattgtttgacaaa 123  Q
    ||||||||| |||||||||||||||||||||   ||| |||||||||||||||    
T  3104 aacaatttagtgttaggttagatatgtcttcagcaatcgaattgtttgacaaa 3156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 8460067 - 8460027
Alignment:
Q  13 tgatatgttcgggagtcctcctgtgaaattattatgatcca 53  Q
    ||||||||| ||||||||||||||||||||||| |||||||    
T  8460067 tgatatgtttgggagtcctcctgtgaaattattgtgatcca 8460027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 219
Target Start/End: Original strand, 2710208 - 2710264
Alignment:
Q  163 tctacgaatgaaatgcctgagcttgataagtcgagatattgcaatgacttttgtgta 219  Q
    |||||| | ||||| |||||||| |||||||||||| |||||||||| |||||||||    
T  2710208 tctacggaggaaattcctgagctcgataagtcgagaaattgcaatgatttttgtgta 2710264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 2710052 - 2710089
Alignment:
Q  8 attggtgatatgttcgggagtcctcctgtgaaattatt 45  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  2710052 attggtgatatgtttgggagtcctcctgtaaaattatt 2710089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 15535992 - 15535943
Alignment:
Q  81 tgttaggttagatatgtcttcgaaaatggaattgtttgacaaaagaagtt 130  Q
    |||||||||||||||||||||   |||| ||||||||||||||| |||||    
T  15535992 tgttaggttagatatgtcttcagcaatgaaattgtttgacaaaaaaagtt 15535943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University