View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8817_low_1 (Length: 473)
Name: NF8817_low_1
Description: NF8817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8817_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 170; Significance: 5e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 39 - 232
Target Start/End: Complemental strand, 54267409 - 54267216
Alignment:
| Q |
39 |
aagataataattagtcggaatagaagaataattataaattcttcagcccatggagttggtctagtgattggcttgagatcttgaagcttgctcatcttaa |
138 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| ||||| |||||||||| |
|
|
| T |
54267409 |
aagataataattagtcggaatagaagaataattataaattcttcagcccatggggttggtctaatgattggtttgagatcttggagcttactcatcttaa |
54267310 |
T |
|
| Q |
139 |
attcatacaaaaccttgctctagttttagatgaggccctcacaagtgacggtgaaattggtcttcacggattagtcggtttttgaattggatat |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
54267309 |
attcatacaaaaccttgctctagttttagatgaggccctcacaagtgacggtgaaattggtctccacggattagtcggtttttgaattggatat |
54267216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 324 - 471
Target Start/End: Complemental strand, 53325830 - 53325683
Alignment:
| Q |
324 |
ccgccactaattgattgatctcaccaccaattctacagacctttctcgtttcgtcgccgttgttgtctgctctaccatcgccgcttttgtattcaccgcc |
423 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
53325830 |
ccgccactaattggttgatctcaccaccaattctacaagcctttgtcgtttcgtcgccattgttgtctgctctaccatcgccgctgttgtattcacctcc |
53325731 |
T |
|
| Q |
424 |
acggttctcgccgcacaactgtaactacatatcgtctctgcttctcca |
471 |
Q |
| |
|
|||||||||||| ||||||| ||||| ||||||||| |||| |||||| |
|
|
| T |
53325730 |
acggttctcgccacacaactataactgcatatcgtcgctgcatctcca |
53325683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 136; Significance: 9e-71; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 324 - 471
Target Start/End: Original strand, 35048354 - 35048501
Alignment:
| Q |
324 |
ccgccactaattgattgatctcaccaccaattctacagacctttctcgtttcgtcgccgttgttgtctgctctaccatcgccgcttttgtattcaccgcc |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35048354 |
ccgccactaattgattgatctcaccaccaattctacagacctttctcgtttcgtcgccgttgttgtctgctctaccatcgccgcttttgtattcaccgcc |
35048453 |
T |
|
| Q |
424 |
acggttctcgccgcacaactgtaactacatatcgtctctgcttctcca |
471 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||| |||||| |
|
|
| T |
35048454 |
acggttctcgccgcacaactataactacatatcgtcgctgcatctcca |
35048501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 324 - 455
Target Start/End: Complemental strand, 15636488 - 15636357
Alignment:
| Q |
324 |
ccgccactaattgattgatctcaccaccaattctacagacctttctcgtttcgtcgccgttgttgtctgctctaccatcgccgcttttgtattcaccgcc |
423 |
Q |
| |
|
||||||| ||||| ||||||||||||| ||||| ||| ||||| || |||||||||||||||||||| ||||||||||||| || |||||||||||||| |
|
|
| T |
15636488 |
ccgccaccaattggttgatctcaccacaaattccacaagcctttgtcttttcgtcgccgttgttgtcttctctaccatcgccactgttgtattcaccgcc |
15636389 |
T |
|
| Q |
424 |
acggttctcgccgcacaactgtaactacatat |
455 |
Q |
| |
|
|||||||||| ||||||||| ||||| ||||| |
|
|
| T |
15636388 |
acggttctcgtcgcacaactataactgcatat |
15636357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 131
Target Start/End: Original strand, 27704008 - 27704050
Alignment:
| Q |
89 |
tggagttggtctagtgattggcttgagatcttgaagcttgctc |
131 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||| |||||| |
|
|
| T |
27704008 |
tggagttggtccagtggttggcttgagatcttgaagtttgctc |
27704050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 324 - 471
Target Start/End: Original strand, 49622109 - 49622256
Alignment:
| Q |
324 |
ccgccactaattgattgatctcaccaccaattctacagacctttctcgtttcgtcgccgttgttgtctgctctaccatcgccgcttttgtattcaccgcc |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49622109 |
ccgccactaattgattgatctcaccaccaattctacagacctttgtcgtttcgtcgccgttgttgtctgctctaccatcgccgcttttgtattcaccgcc |
49622208 |
T |
|
| Q |
424 |
acggttctcgccgcacaactgtaactacatatcgtctctgcttctcca |
471 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||| |||||| |
|
|
| T |
49622209 |
acggttctcgccgcacaactataactacatatcgtcgctgcatctcca |
49622256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 326 - 442
Target Start/End: Complemental strand, 20008348 - 20008232
Alignment:
| Q |
326 |
gccactaattgattgatctcaccaccaattctacagacctttctcgtttcgtcgccgttgttgtctgctctaccatcgccgcttttgtattcaccgccac |
425 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||| | ||| |||||||||||| |
|
|
| T |
20008348 |
gccactaattggttgatctcaccaccaagtctacaagcctttgtcgtttcgtcgccgttgttgtctgctctaccatcgccgatgttgcattcaccgccac |
20008249 |
T |
|
| Q |
426 |
ggttctcgccgcacaac |
442 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
20008248 |
gattctcgccgcacaac |
20008232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 326 - 442
Target Start/End: Original strand, 14122021 - 14122137
Alignment:
| Q |
326 |
gccactaattgattgatctcaccaccaattctacagacctttctcgtttcgtcgccgttgttgtctgctctaccatcgccgcttttgtattcaccgccac |
425 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||| | ||| |||||||||||| |
|
|
| T |
14122021 |
gccactaattggttgatctcaccaccaagtctacaagcctttgtcgtttcgtcgccgttgttgtctgctctaccatcgccgatgttgcattcaccgccac |
14122120 |
T |
|
| Q |
426 |
ggttctcgccgcacaac |
442 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
14122121 |
gattctcgccgcacaac |
14122137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 398 - 449
Target Start/End: Complemental strand, 35056295 - 35056244
Alignment:
| Q |
398 |
ccatcgccgcttttgtattcaccgccacggttctcgccgcacaactgtaact |
449 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35056295 |
ccatcgccgctgttacattcaccgccacggttctcgccgcacaactataact |
35056244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 360
Target Start/End: Complemental strand, 35056429 - 35056393
Alignment:
| Q |
324 |
ccgccactaattgattgatctcaccaccaattctaca |
360 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||| |
|
|
| T |
35056429 |
ccgccactaattggttaatctcaccaccaattctaca |
35056393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University