View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8817_low_3 (Length: 350)
Name: NF8817_low_3
Description: NF8817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8817_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 82 - 337
Target Start/End: Original strand, 1106850 - 1107114
Alignment:
| Q |
82 |
atttcacaactttaaattgaaatcttcaacatcatgagaatatgcagaatgtgtatcaaaacgcttttccttattttgcatcattctaatttctatccct |
181 |
Q |
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| T |
1106850 |
atttcacaactttaaattgaaatcttcaacatcatgagaatatgcagaatgtgtatcaaaacgcttttccttattttgcatcattctaatttctatccct |
1106949 |
T |
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| Q |
182 |
cctacaatactcttttccaactgaaaagatactacctctactcttttcctactcttttggtaaatttctttgcaatctaaacattcattc---------a |
272 |
Q |
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| T |
1106950 |
cctccaatactcttttccaactgaaaagatactacctctactcttttcctactcttttggtaaatttctttgcaatctaaacattcattcatacgagcaa |
1107049 |
T |
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| Q |
273 |
tagcactgaaatttatcaaatcatttctattgcttactgctgggattcaacttttgcttctctgc |
337 |
Q |
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| T |
1107050 |
tagcactgaaatttatcaaatcatttctattgcttactgctgggattcaacttttgcttctctgc |
1107114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 1106758 - 1106811
Alignment:
| Q |
17 |
atatatatatgcttaaatgactcaaatatacactccaaattataataataacta |
70 |
Q |
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| T |
1106758 |
atatatatatgcttaaatgactcaaatatacactccaaattataataataacta |
1106811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Original strand, 1108621 - 1108659
Alignment:
| Q |
231 |
tactcttttggtaaatttctttgcaatctaaacattcat |
269 |
Q |
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| T |
1108621 |
tactcttttggtacatttctttgcaatctaagcattcat |
1108659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 319
Target Start/End: Original strand, 1108694 - 1108734
Alignment:
| Q |
279 |
tgaaatttatcaaatcatttctattgcttactgctgggatt |
319 |
Q |
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| T |
1108694 |
tgaaatatatcaaatcatttctattgcttattgctaggatt |
1108734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 230 - 319
Target Start/End: Complemental strand, 11250957 - 11250863
Alignment:
| Q |
230 |
ctactcttttggtaaatttctttgcaatctaaacattcat-----tcatagcactgaaatttatcaaatcatttctattgcttactgctgggatt |
319 |
Q |
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| T |
11250957 |
ctactcttttggtaaattcctttgcaatctaaacattcatagaaccaatagcagtgaaatatatcaaatcatttctattgcttattgctaggatt |
11250863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 11249294 - 11249249
Alignment:
| Q |
22 |
tatatgcttaaatgactcaaatatacactccaaattataataataa |
67 |
Q |
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| T |
11249294 |
tatatgcttaaatgactcaaatatacactccagattgtaataataa |
11249249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 269
Target Start/End: Complemental strand, 11249060 - 11248968
Alignment:
| Q |
186 |
caatactcttttccaactgaaaagata-ctacctctactct--------tttcctactcttttggtaaatttctttgcaatctaaacattcat |
269 |
Q |
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| T |
11249060 |
caatactcctctccaactgaaaagatagctacctctactctacctgtctttttctactcttttggtacatttctttgcaatctaagcattcat |
11248968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 228
Target Start/End: Complemental strand, 11250989 - 11250948
Alignment:
| Q |
187 |
aatactcttttccaactgaaaagatactacctctactctttt |
228 |
Q |
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| T |
11250989 |
aatactcctttccaaccgaaaagatactacctctactctttt |
11250948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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