View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8817_low_8 (Length: 231)

Name: NF8817_low_8
Description: NF8817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8817_low_8
NF8817_low_8
[»] chr3 (3 HSPs)
chr3 (11-171)||(40820399-40820559)
chr3 (70-131)||(40819739-40819800)
chr3 (95-135)||(11442130-11442170)
[»] chr6 (3 HSPs)
chr6 (11-170)||(3336521-3336680)
chr6 (70-135)||(3337282-3337347)
chr6 (97-135)||(18290248-18290286)
[»] scaffold0136 (1 HSPs)
scaffold0136 (11-135)||(22117-22241)
[»] chr5 (2 HSPs)
chr5 (170-212)||(13986542-13986584)
chr5 (97-135)||(12330181-12330219)
[»] chr1 (1 HSPs)
chr1 (97-135)||(2821466-2821504)


Alignment Details
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 11 - 171
Target Start/End: Original strand, 40820399 - 40820559
Alignment:
Q  11 gagatgaaggagagaaaaaatgatagtggaagaaagtgtggnnnnnnnttccaggaccaagtgactaagataatatcatgtttcttgtttgatctaatgg 110  Q
    |||||| |||||||| |||||||||||||||||||||||||        ||||| ||| |||||||||||||||| ||||||||||||||||||||||||    
T  40820399 gagatggaggagagagaaaatgatagtggaagaaagtgtggaaaaaaaatccagtaccgagtgactaagataataccatgtttcttgtttgatctaatgg 40820498  T
Q  111 taaaaaatcaactttcccatggtggnnnnnnncttcactgccccataataaacaccaccct 171  Q
    ||||| |||||||||||||||||||       ||||||||||||||| ||||| |||||||    
T  40820499 taaaatatcaactttcccatggtgggaaaaaacttcactgccccatattaaacgccaccct 40820559  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 40819800 - 40819739
Alignment:
Q  70 agtgactaagataatatcatgtttcttgtttgatctaatggtaaaaaatcaactttcccatg 131  Q
    |||||||||||||| |  ||||||||| ||||||||||||||||||||||||||||||||||    
T  40819800 agtgactaagataagactatgtttcttatttgatctaatggtaaaaaatcaactttcccatg 40819739  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 11442130 - 11442170
Alignment:
Q  95 ttgtttgatctaatggtaaaaaatcaactttcccatggtgg 135  Q
    ||||||||||||||||| |||||  ||||||||||||||||    
T  11442130 ttgtttgatctaatggtcaaaaactaactttcccatggtgg 11442170  T

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Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 11 - 170
Target Start/End: Complemental strand, 3336680 - 3336521
Alignment:
Q  11 gagatgaaggagagaaaaaatgatagtggaagaaagtgtggnnnnnnnttccaggaccaagtgactaagataatatcatgtttcttgtttgatctaatgg 110  Q
    |||||| |||||||| |||||||||||||||||||||||||        | ||| ||| |||||||||||||||| ||||||||||||||||||||||||    
T  3336680 gagatggaggagagagaaaatgatagtggaagaaagtgtggaaaaaaaattcagtaccgagtgactaagataataccatgtttcttgtttgatctaatgg 3336581  T
Q  111 taaaaaatcaactttcccatggtggnnnnnnncttcactgccccataataaacaccaccc 170  Q
    ||||| ||||||||| |||||||||       ||||||||||||||| ||||| ||||||    
T  3336580 taaaatatcaacttttccatggtggaaaaaaacttcactgccccatactaaacgccaccc 3336521  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 70 - 135
Target Start/End: Original strand, 3337282 - 3337347
Alignment:
Q  70 agtgactaagataatatcatgtttcttgtttgatctaatggtaaaaaatcaactttcccatggtgg 135  Q
    |||||||||||||| | |||||| ||| |||||||||||||||||||||||| ||| |||||||||    
T  3337282 agtgactaagataagaccatgttccttatttgatctaatggtaaaaaatcaatttttccatggtgg 3337347  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 135
Target Start/End: Complemental strand, 18290286 - 18290248
Alignment:
Q  97 gtttgatctaatggtaaaaaatcaactttcccatggtgg 135  Q
    ||||||||||||||| |||||| ||||||||||||||||    
T  18290286 gtttgatctaatggttaaaaattaactttcccatggtgg 18290248  T

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Target: scaffold0136 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 22117 - 22241
Alignment:
Q  11 gagatgaaggagagaaaaaatgatagtggaagaaagtgtggnnnnnnnttccaggaccaagtgactaagataatatcatgtttcttgtttgatctaatgg 110  Q
    |||||| |||||||| |||||||||||||||||||||||||        ||||| ||  |||||||||||||||| ||||||||||||||||||||||||    
T  22117 gagatggaggagagagaaaatgatagtggaagaaagtgtggaaaaaaaatccagtactgagtgactaagataataccatgtttcttgtttgatctaatgg 22216  T
Q  111 taaaaaatcaactttcccatggtgg 135  Q
    | |||||  || |||||||||||||    
T  22217 tcaaaaacaaattttcccatggtgg 22241  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 212
Target Start/End: Original strand, 13986542 - 13986584
Alignment:
Q  170 cttcttgggagttgaagttgtctattatcctagaggccatctt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  13986542 cttcttgggagttgaagttgtctattatcctagaggccatctt 13986584  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 135
Target Start/End: Complemental strand, 12330219 - 12330181
Alignment:
Q  97 gtttgatctaatggtaaaaaatcaactttcccatggtgg 135  Q
    ||||||||||||||| |||||| ||||||||||||||||    
T  12330219 gtttgatctaatggttaaaaattaactttcccatggtgg 12330181  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 135
Target Start/End: Original strand, 2821466 - 2821504
Alignment:
Q  97 gtttgatctaatggtaaaaaatcaactttcccatggtgg 135  Q
    ||||||||||||||| |||||| ||||||||||||||||    
T  2821466 gtttgatctaatggtcaaaaattaactttcccatggtgg 2821504  T

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