View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8818_high_2 (Length: 317)
Name: NF8818_high_2
Description: NF8818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8818_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 47638422 - 47638133
Alignment:
| Q |
18 |
gagtttgcgaggaaattctgtacagcgacggcgagtcctgactgcaacagaaactactctaaatgatcagtgtggaaggagagtcaaacaatgacttgac |
117 |
Q |
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| T |
47638422 |
gagtttgagaggaaattctgtacagcgacggcgagtcctgactgcaatagaaactactctaaatgatcagtgtggaaggagagtcaaacaatgacttgac |
47638323 |
T |
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| Q |
118 |
ttgcatgccattggttgatcacctgactttttaaaaagaaaaatactagcactagaattagaggcagaaaattcaaaggagactcctctaaatgtgacta |
217 |
Q |
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| T |
47638322 |
ttgcatgccattggttgatcacctgactttttaaaaagaaaaatactagtactagaattagaggcagaaaattcaaaggagactcctctaaatatgacta |
47638223 |
T |
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| Q |
218 |
ttataagtcaatttcttatccataaagttagttggcagataccaaatatattttactcatataccactattttaaaccatcacaggttct |
307 |
Q |
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| T |
47638222 |
ttataagtcaatttcttatccataaagttagttggcagataccaaatatattttactcatataccactattttaaactatcaaaggttct |
47638133 |
T |
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