View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8818_low_1 (Length: 474)
Name: NF8818_low_1
Description: NF8818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8818_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 160 - 465
Target Start/End: Original strand, 26926949 - 26927254
Alignment:
| Q |
160 |
cgaggttcaactatagaaaaattagataaatatcataaaaactatctgattgggcttagcctatttgcctaaatattaagattagtgcaaggtttatgtt |
259 |
Q |
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||||||||||| || |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26926949 |
cgaggttcaaccatcgaaaaattagataaatatcataaaaactatttaattgggcttagcctatttgcctaaatattaagattagtgcaaggtttatgtt |
26927048 |
T |
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| Q |
260 |
ggaaaattaaaaagtaaagttaatttgattttatccataaattaattaccatgttaagaactcaggaagactggttaattcctactcaagtctgtattcc |
359 |
Q |
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| T |
26927049 |
ggaaaattaaaaagtaaagttaatttgattttatccataaattaattaccatgttaagaactcaggaagactggttaattcccactcaagtctgtattcc |
26927148 |
T |
|
| Q |
360 |
atcctaaaatcaatgtcacctcaactcagtaagagcaatgaattcgaaatcaaattggtataaataatgacaataaatcttacatatatgtatctaagaa |
459 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26927149 |
atcctaaaatcaatgtcacctcaactcagtaagagcgatgaattccaagttaaattggtataaataatgacaataaatcttacatatatgtatctaagaa |
26927248 |
T |
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| Q |
460 |
gtatta |
465 |
Q |
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|||||| |
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| T |
26927249 |
gtatta |
26927254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 26926806 - 26926859
Alignment:
| Q |
16 |
attactaccggtcattggttcacttggttcaatcggtttaaccatggttgaatc |
69 |
Q |
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| T |
26926806 |
attactacaggtcattggttcacttggttcaattgatttaaccatggttgaatc |
26926859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 354 - 465
Target Start/End: Original strand, 36670630 - 36670742
Alignment:
| Q |
354 |
tattccatcctaaaatcaatgtca-cctcaactcagtaagagcaatgaattcgaaatcaaattggtataaataatgacaataaatcttacatatatgtat |
452 |
Q |
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||||| |||||||||||| |||| ||||||||||||||||| |||||||| | ||||| ||||||||||||||||||| ||||||| ||||||| |
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| T |
36670630 |
tattctatcctaaaatcagagtcatcctcaactcagtaagagtgatgaattcacattcaaacctgtataaataatgacaataagtcttacaaatatgtac |
36670729 |
T |
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| Q |
453 |
ctaagaagtatta |
465 |
Q |
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| T |
36670730 |
ccaagaagtatta |
36670742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 175 - 303
Target Start/End: Original strand, 36670132 - 36670264
Alignment:
| Q |
175 |
gaaaaattagataaatatcataaaaactatctgattgggc-ttagcctatttgcctaaatattaagattagtgc---aaggtttatgttggaaaattaaa |
270 |
Q |
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||||||| ||||||||||||||||||| || | |||| || |||||||||||||||||||||| | |||| ||| |||||||||||||| | | || |
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| T |
36670132 |
gaaaaatcagataaatatcataaaaacaatttaattgtgcattagcctatttgcctaaatattcaaattactgcgcatgggtttatgttggaatacttaa |
36670231 |
T |
|
| Q |
271 |
aagtaaagttaatttgattttatccataaatta |
303 |
Q |
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|| | ||||||||||||||||| ||||||||| |
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| T |
36670232 |
aattgtagttaatttgattttatacataaatta |
36670264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 27562728 - 27562769
Alignment:
| Q |
28 |
cattggttcacttggttcaatcggtttaaccatggttgaatc |
69 |
Q |
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| T |
27562728 |
cattggttcacttggttcaatcggtttaaccatggttgaatc |
27562769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 36669776 - 36669816
Alignment:
| Q |
29 |
attggttcacttggttcaatcggtttaaccatggttgaatc |
69 |
Q |
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||||||||||||||||||||| ||||| |||||||||||| |
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| T |
36669776 |
attggttcacttggttcaatcagtttattcatggttgaatc |
36669816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 216 - 315
Target Start/End: Original strand, 29412690 - 29412782
Alignment:
| Q |
216 |
tagcctatttgcctaaatattaagattagtgcaaggtttatgttggaa-aattaaaaagtaaagttaatttgattttatccataaattaattaccatgtt |
314 |
Q |
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||||||||||||||||||||| |||||| |||||||||| ||||||| |||| ||| ||||||||||||||| |||||||||||||||||||| |
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| T |
29412690 |
tagcctatttgcctaaatattcagattactgcaaggttttggttggaataatttaaa-------ttaatttgattttat-cataaattaattaccatgtt |
29412781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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