View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8818_low_3 (Length: 272)

Name: NF8818_low_3
Description: NF8818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8818_low_3
NF8818_low_3
[»] chr1 (8 HSPs)
chr1 (1-250)||(35162941-35163190)
chr1 (1-250)||(30403109-30403358)
chr1 (1-250)||(30409666-30409915)
chr1 (1-250)||(29394264-29394513)
chr1 (117-250)||(29393903-29394036)
chr1 (117-249)||(35163418-35163550)
chr1 (117-238)||(30402760-30402881)
chr1 (117-238)||(30409317-30409438)
[»] chr8 (6 HSPs)
chr8 (1-250)||(11143696-11143945)
chr8 (1-250)||(1604071-1604320)
chr8 (117-250)||(1661459-1661592)
chr8 (117-238)||(11144173-11144294)
chr8 (150-250)||(44551873-44551972)
chr8 (1-63)||(1661604-1661666)
[»] chr3 (2 HSPs)
chr3 (1-250)||(55040338-55040587)
chr3 (117-250)||(55039977-55040110)
[»] chr5 (2 HSPs)
chr5 (5-250)||(9260837-9261082)
chr5 (117-250)||(9260474-9260607)
[»] chr7 (3 HSPs)
chr7 (1-176)||(13947651-13947826)
chr7 (117-250)||(13948053-13948186)
chr7 (136-224)||(1972595-1972683)
[»] chr4 (2 HSPs)
chr4 (1-109)||(46623684-46623792)
chr4 (136-224)||(36892665-36892753)
[»] chr6 (3 HSPs)
chr6 (5-103)||(2311861-2311959)
chr6 (157-250)||(32445856-32445949)
chr6 (150-250)||(14986903-14987002)
[»] chr2 (1 HSPs)
chr2 (136-224)||(26450122-26450210)


Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 35162941 - 35163190
Alignment:
Q  1 cactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaatttgcacaacaagtattgtcaatgttatgataaaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35162941 cactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaatttgcacaacaagtattgtcaatgttatgataaaatag 35163040  T
Q  101 tgtgcaaatnnnnnnnctttacataaagtgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgt 200  Q
    |||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35163041 tgtgcaaataaaaaaactttacataaagtgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgt 35163140  T
Q  201 ggtctgttctcgaagggcagcaggctgtgtagtgcctctttgttggctgc 250  Q
    ||| |||||| || ||||||||||||||||||||| ||||||||||||||    
T  35163141 ggtgtgttcttgaggggcagcaggctgtgtagtgcatctttgttggctgc 35163190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 30403358 - 30403109
Alignment:
Q  1 cactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaatttgcacaacaagtattgtcaatgttatgataaaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30403358 cactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaatttgcacaacaagtattgtcaatgttatgataaaatag 30403259  T
Q  101 tgtgcaaatnnnnnnnctttacataaagtgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgt 200  Q
    |||||||||       ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30403258 tgtgcaaataaataaactttacataaattgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgt 30403159  T
Q  201 ggtctgttctcgaagggcagcaggctgtgtagtgcctctttgttggctgc 250  Q
    ||| |||||| || ||||||||||||||||||||| ||||||||||||||    
T  30403158 ggtgtgttcttgaggggcagcaggctgtgtagtgcatctttgttggctgc 30403109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 30409915 - 30409666
Alignment:
Q  1 cactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaatttgcacaacaagtattgtcaatgttatgataaaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30409915 cactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaatttgcacaacaagtattgtcaatgttatgataaaatag 30409816  T
Q  101 tgtgcaaatnnnnnnnctttacataaagtgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgt 200  Q
    |||||||||       ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30409815 tgtgcaaataaataaactttacataaattgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgt 30409716  T
Q  201 ggtctgttctcgaagggcagcaggctgtgtagtgcctctttgttggctgc 250  Q
    ||| |||||| || ||||||||||||||||||||| ||||||||||||||    
T  30409715 ggtgtgttcttgaggggcagcaggctgtgtagtgcatctttgttggctgc 30409666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 29394513 - 29394264
Alignment:
Q  1 cactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaatttgcacaacaagtattgtcaatgttatgataaaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29394513 cactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaatttgcacaacaagtattgtcaatgttatgataaaatag 29394414  T
Q  101 tgtgcaaatnnnnnnnctttacataaagtgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgt 200  Q
    |||||||||       ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  29394413 tgtgcaaataaataaactttacataaattgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgtttttcgt 29394314  T
Q  201 ggtctgttctcgaagggcagcaggctgtgtagtgcctctttgttggctgc 250  Q
    ||| |||||| || ||||||||| ||||||||||| |||||||| |||||    
T  29394313 ggtgtgttcttgaggggcagcagactgtgtagtgcatctttgttagctgc 29394264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 117 - 250
Target Start/End: Complemental strand, 29394036 - 29393903
Alignment:
Q  117 ctttacataaagtgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtctgttctcgaagg 216  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||| | || |||||| |     
T  29394036 ctttacataaattgataaagattgtcctttgagaaaatagtgatagttttggtggactttgtcgaggtggtttatgttttttgtgatgtgctctcgagga 29393937  T
Q  217 gcagcaggctgtgtagtgcctctttgttggctgc 250  Q
     ||||||| |||||||||||||| ||||||||||    
T  29393936 acagcaggatgtgtagtgcctctgtgttggctgc 29393903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 117 - 249
Target Start/End: Original strand, 35163418 - 35163550
Alignment:
Q  117 ctttacataaagtgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtctgttctcgaagg 216  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||||  |||||||||| ||||||| ||||||||||||| || |||||| ||    
T  35163418 ctttacataaattgataaagattgtcctttgagaaaatagtgatagttttggtggactttgtcgaagtggtttatgttttttgtggtgtgctctcgaggg 35163517  T
Q  217 gcagcaggctgtgtagtgcctctttgttggctg 249  Q
     || |||||||||| |||||||| |||||||||    
T  35163518 acaacaggctgtgtggtgcctctgtgttggctg 35163550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 117 - 238
Target Start/End: Complemental strand, 30402881 - 30402760
Alignment:
Q  117 ctttacataaagtgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtctgttctcgaagg 216  Q
    ||||||||||| ||| ||||| |||| ||||||||||||||||||||||||||  ||| |||||||||||||| ||||||||||||| || |||||||||    
T  30402881 ctttacataaattgaaaaagactgtcctttgagaaaatagtgatagttttggtggactctgtcgaggtggtttatgttttttgtggtgtgctctcgaagg 30402782  T
Q  217 gcagcaggctgtgtagtgcctc 238  Q
     ||||||||||||| |||||||    
T  30402781 acagcaggctgtgtggtgcctc 30402760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 117 - 238
Target Start/End: Complemental strand, 30409438 - 30409317
Alignment:
Q  117 ctttacataaagtgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtctgttctcgaagg 216  Q
    ||||||||||| ||| ||||| |||| ||||||||||||||||||||||||||  ||| |||||||||||||| ||||||||||||| || |||||||||    
T  30409438 ctttacataaattgaaaaagactgtcctttgagaaaatagtgatagttttggtggactctgtcgaggtggtttatgttttttgtggtgtgctctcgaagg 30409339  T
Q  217 gcagcaggctgtgtagtgcctc 238  Q
     ||||||||||||| |||||||    
T  30409338 acagcaggctgtgtggtgcctc 30409317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 11143696 - 11143945
Alignment:
Q  1 cactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaatttgcacaacaagtattgtcaatgttatgataaaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11143696 cactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaatttgcacaacaagtattgtcaatgttatgataaaatag 11143795  T
Q  101 tgtgcaaatnnnnnnnctttacataaagtgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgt 200  Q
    |||||||||       ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11143796 tgtgcaaataaataaactttacataaattgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgt 11143895  T
Q  201 ggtctgttctcgaagggcagcaggctgtgtagtgcctctttgttggctgc 250  Q
    ||| |||||| || ||||||||||||||||||||| ||||||||||||||    
T  11143896 ggtgtgttcttgaggggcagcaggctgtgtagtgcatctttgttggctgc 11143945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 1604320 - 1604071
Alignment:
Q  1 cactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaatttgcacaacaagtattgtcaatgttatgataaaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1604320 cactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaattttcacaacaagtattgtcaatgttatgataaaatag 1604221  T
Q  101 tgtgcaaatnnnnnnnctttacataaagtgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgt 200  Q
    |||||||||       ||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||    
T  1604220 tgtgcaaataaataaactttacataaattgataaagattgtcttttgagaaaatagtgatagttttggtggactttgtcgatgtggtttctgttttttgt 1604121  T
Q  201 ggtctgttctcgaagggcagcaggctgtgtagtgcctctttgttggctgc 250  Q
    ||| ||||||||| |||||||||| |||||||||||||||||||||||||    
T  1604120 ggtgtgttctcgaggggcagcaggatgtgtagtgcctctttgttggctgc 1604071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 117 - 250
Target Start/End: Complemental strand, 1661592 - 1661459
Alignment:
Q  117 ctttacataaagtgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtctgttctcgaagg 216  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||||  |||| ||||||||||||| |||||||| |||| || |||||| ||    
T  1661592 ctttacataaattgataaagattgtcctttgagaaaatagtgatagttttggtggacttcgtcgaggtggtttatgttttttatggtgtgctctcgaggg 1661493  T
Q  217 gcagcaggctgtgtagtgcctctttgttggctgc 250  Q
     ||||||||||||| |||||||| ||||||||||    
T  1661492 acagcaggctgtgtggtgcctctgtgttggctgc 1661459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 117 - 238
Target Start/End: Original strand, 11144173 - 11144294
Alignment:
Q  117 ctttacataaagtgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtctgttctcgaagg 216  Q
    ||||||||||| ||||||||| |||| ||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||| || |||||||||    
T  11144173 ctttacataaattgataaagactgtcctttgagaaaatagtgatagttttggtggactttgtcgaggtggtttatgttttttgtggtgtgctctcgaagg 11144272  T
Q  217 gcagcaggctgtgtagtgcctc 238  Q
     ||||||||||||| |||||||    
T  11144273 acagcaggctgtgtggtgcctc 11144294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 150 - 250
Target Start/End: Original strand, 44551873 - 44551972
Alignment:
Q  150 aaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtctgttctcgaagggcagcaggctgtgtagtgcctctttgttggctg 249  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||||||||||| |  |||||| ||||||||||||||||||||||||| |||||||||    
T  44551873 aaaatagtgatagttttggtggactttgtcgaggtg-tttctgttttttgtggtgttctctcgaggggcagcaggctgtgtagtgcctctgtgttggctg 44551971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 1661666 - 1661604
Alignment:
Q  1 cactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaat 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1661666 cactatcatcacgataatgggtgtgaataactaatatgaaatatagtttcattagatgtaaat 1661604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 55040587 - 55040338
Alignment:
Q  1 cactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaatttgcacaacaagtattgtcaatgttatgataaaatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  55040587 cactatcatcacgataatgggtgtgaataactaatatgaaatatagtttcattagatgtaaatttgcataacaagtattgtcaatgttatgataaaatag 55040488  T
Q  101 tgtgcaaatnnnnnnnctttacataaagtgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgt 200  Q
    |||||||||       ||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  55040487 tgtgcaaataaataaactttacataaattgatgaagattgtcttttgagaaaatagtgatatttttggtatactttgtcgaggtggtttctgttttttgt 55040388  T
Q  201 ggtctgttctcgaagggcagcaggctgtgtagtgcctctttgttggctgc 250  Q
    ||| |||||| || ||||||||||||||||||||| ||||||||||||||    
T  55040387 ggtgtgttcttgaggggcagcaggctgtgtagtgcatctttgttggctgc 55040338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 117 - 250
Target Start/End: Complemental strand, 55040110 - 55039977
Alignment:
Q  117 ctttacataaagtgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtctgttctcgaagg 216  Q
    ||||||||||| ||||||||||| || ||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||| || |||||| ||    
T  55040110 ctttacataaattgataaagattatcctttgagaaaatagtgatagttttggtggactttgtcgaggtggtttatgttttttgtggtgtgctctcgaggg 55040011  T
Q  217 gcagcaggctgtgtagtgcctctttgttggctgc 250  Q
     ||||||||||||| |||||||| ||||||||||    
T  55040010 acagcaggctgtgtggtgcctctgtgttggctgc 55039977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 5 - 250
Target Start/End: Complemental strand, 9261082 - 9260837
Alignment:
Q  5 atcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaatttgcacaacaagtattgtcaatgttatgataaaatagtgtg 104  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||| |||||||||||||||||||||    
T  9261082 atcatcacgataatgggagtgaataactaatatgaaatatagttccattagatctaaatttgcacaataggtattgtctatgttatgataaaatagtgtg 9260983  T
Q  105 caaatnnnnnnnctttacataaagtgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtc 204  Q
    |||||       ||||||||||| ||||| ||||||||| |||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||     
T  9260982 caaataaataaactttacataaattgatagagattgtctgttgagaaaatagtgatagttttggtggattttgtcgaggtggtttctgttttttgtggtg 9260883  T
Q  205 tgttctcgaagggcagcaggctgtgtagtgcctctttgttggctgc 250  Q
    || |||||| ||||||||||||||||||||||||| ||||||||||    
T  9260882 tgctctcgaggggcagcaggctgtgtagtgcctctgtgttggctgc 9260837  T

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Target: chr5; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 117 - 250
Target Start/End: Complemental strand, 9260607 - 9260474
Alignment:
Q  117 ctttacataaagtgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtctgttctcgaagg 216  Q
    ||||| ||||| |||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||| |||||||||| || || |||||| ||    
T  9260607 ctttatataaattgataaagattgtcttttgagaaaatagcgatagttttggtggactttgtcgaggtggtttttgttttttgtagtgtgctctcgaggg 9260508  T
Q  217 gcagcaggctgtgtagtgcctctttgttggctgc 250  Q
     |||||||||||||||||||||  ||||||||||    
T  9260507 acagcaggctgtgtagtgcctcggtgttggctgc 9260474  T

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Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 13947651 - 13947826
Alignment:
Q  1 cactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaatttgcacaacaagtattgtcaatgttatgataaaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13947651 cactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaatttgcacaacaagtattgtcaatgttatgataaaatag 13947750  T
Q  101 tgtgcaaatnnnnnnnctttacataaagtgataaagattgtcttttgagaaaatagtgatagttttggtatacttt 176  Q
    |||||||||       ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13947751 tgtgcaaataaataaactttacataaattgataaagattgtcttttgagaaaataatgatagttttggtatacttt 13947826  T

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Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 117 - 250
Target Start/End: Original strand, 13948053 - 13948186
Alignment:
Q  117 ctttacataaagtgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtctgttctcgaagg 216  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||   |||||||||||||||||| ||||||||||||| ||||||||| ||    
T  13948053 ctttacataaattgataaagattgtcctttgagaaaatagtgatagttttgggggactttgtcgaggtggtttatgttttttgtggtgtgttctcgaggg 13948152  T
Q  217 gcagcaggctgtgtagtgcctctttgttggctgc 250  Q
     ||||||||||||| |||||||| ||||||||||    
T  13948153 acagcaggctgtgtggtgcctctgtgttggctgc 13948186  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 224
Target Start/End: Original strand, 1972595 - 1972683
Alignment:
Q  136 gattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtctgttctcgaagggcagcagg 224  Q
    |||||||| |||||||||||||| ||||||||||  ||||| |||| |||||||||||  |||| ||| ||  ||||| ||||||||||    
T  1972595 gattgtctgttgagaaaatagtggtagttttggtggactttttcgaagtggtttctgtcctttgcggtgtgccctcgaggggcagcagg 1972683  T

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Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 46623792 - 46623684
Alignment:
Q  1 cactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaatttgcacaacaagtattgtcaatgttatgataaaatag 100  Q
    |||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||  ||||||||||||||||||||||||  ||||||||||||||||    
T  46623792 cactatcatcaccataatgggtgtgattaactattatgaaatatagttccattagacctaaatttgcacaacaagtattgtctttgttatgataaaatag 46623693  T
Q  101 tgtgcaaat 109  Q
    |||| ||||    
T  46623692 tgtgtaaat 46623684  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 136 - 224
Target Start/End: Original strand, 36892665 - 36892753
Alignment:
Q  136 gattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtctgttctcgaagggcagcagg 224  Q
    |||||||| |||||||||||||||||||||||||  |||||||||| ||||||||||| ||||| ||| ||  ||||| ||||||||||    
T  36892665 gattgtctgttgagaaaatagtgatagttttggtggactttgtcgaagtggtttctgtcttttgcggtgtgccctcgaggggcagcagg 36892753  T

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Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 2311959 - 2311861
Alignment:
Q  5 atcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaatttgcacaacaagtattgtcaatgttatgataaaatagtgt 103  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||||||||||| ||||||||||||| | |||||||| ||||||||||||||||||||    
T  2311959 atcatcacgataatgggagtgaatacctaatatcaaatatagttccattagatctaaatttgcacaataggtattgtctatgttatgataaaatagtgt 2311861  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 157 - 250
Target Start/End: Original strand, 32445856 - 32445949
Alignment:
Q  157 tgatagttttggtatactttgtcgaggtggtttctgttttttgtggtctgttctcgaagggcagcaggctgtgtagtgcctctttgttggctgc 250  Q
    |||||||||||||  |||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||| |||||    
T  32445856 tgatagttttggtggactttgtcgaggtggtttctgttttttgtggtgtgctctcgaggggcagcaggctgtgtagtgcctctttgttagctgc 32445949  T

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Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 250
Target Start/End: Complemental strand, 14987002 - 14986903
Alignment:
Q  150 aaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtctgttctcgaagggcagcaggctgtgtagtgcctctttgttggctg 249  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||||||||  | |  |||||| |||||| |||||||||||||||||| |||||||||    
T  14987002 aaaatagtgatagttttggtggactttgtcgaggtg-tttctgttttttgtcatgttatctcgaggggcagtaggctgtgtagtgcctctgtgttggctg 14986904  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 224
Target Start/End: Original strand, 26450122 - 26450210
Alignment:
Q  136 gattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtctgttctcgaagggcagcagg 224  Q
    |||||||| |||||||||||||| ||||||||||  |||||||||| ||||||||||| ||||| ||| ||  ||||| ||||||||||    
T  26450122 gattgtctgttgagaaaatagtggtagttttggtggactttgtcgaagtggtttctgtcttttgcggtgtgccctcgaggggcagcagg 26450210  T

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