View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8819_high_3 (Length: 361)
Name: NF8819_high_3
Description: NF8819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8819_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 5810661 - 5810316
Alignment:
| Q |
1 |
tgatggatacaatgtggcacaatgcataagggctgtggctgaacctttgctagctactcactttggtgaaggtgtcattagagagatttttaatcgctat |
100 |
Q |
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| T |
5810661 |
tgatggatacaatgtggcacaatgcataagggctgtggctgaacctttgctagctagtcactttggtgaaggtgtcattaaagagatttttaatcgctat |
5810562 |
T |
|
| Q |
101 |
aagaaaattttaggtgatcgcatgtcgaaagagaagactaagttcaccaatcttaccctaatgatgactaggaaaccatgagcatggaaaaacgttttgg |
200 |
Q |
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|||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||| ||||||| |||||| |
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| T |
5810561 |
aagaaaattttaggagatcgcatgtccaaagagaagacgaagttcaccaatcttaccctaatgatgactagaaaagcatgagcattgaaaaacattttgg |
5810462 |
T |
|
| Q |
201 |
tttagggttttatatttgcagttcaaaataaatttcagtttcactttagtggttaatttgcattatgtgttcctatccaaatcatatttctgtccttgtt |
300 |
Q |
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| T |
5810461 |
cttagggttttatatttgcagttcaaaataaatttcagtttcactttagttgttaatttgcattatgtgttcctatccaaatcatatttctgtccttgtt |
5810362 |
T |
|
| Q |
301 |
tgctttaattctgcaccagctacattaccaattattggtactattt |
346 |
Q |
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| T |
5810361 |
tgctttaattctgcactagctacattaccaattattggtactattt |
5810316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 27735961 - 27735778
Alignment:
| Q |
1 |
tgatggatacaatgtggcacaatgcataagggctgtggctgaacctttgctagctactcactttggtgaaggtgtcattagagagatttttaatcgctat |
100 |
Q |
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||||||||||||| ||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||| | |||||| |
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| T |
27735961 |
tgatggatacaatatggcacaatgcattagggctgtggctgaacctttgctagttagtcactttggtgaaggtgtcattacagagatttttgaccgctat |
27735862 |
T |
|
| Q |
101 |
aagaaaattttaggtgatcgcatgtcgaaagagaagactaagttcaccaatcttaccctaatgatgactaggaaaccatgagca |
184 |
Q |
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| ||||||||| |||||| ||||| |||||||| ||||||||||||||||||| | || || |||| || ||||| |||||| |
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| T |
27735861 |
agaaaaattttaactgatcggatgtccaaagagaaaactaagttcaccaatcttagcatattgttgacaagaaaaccttgagca |
27735778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 32626956 - 32626855
Alignment:
| Q |
1 |
tgatggatacaatgtggcacaatgcataagggctgtggctgaacctttgctagctactcactttggtgaaggtgtcattagagagatttttaatcgctat |
100 |
Q |
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||||||||||||||||||||||||||| || ||| |||||||||||||||||| | ||| |||||||||||||| ||| |||||||||||| |||||| |
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| T |
32626956 |
tgatggatacaatgtggcacaatgcatgagagctttggctgaacctttgctagtcagtcattttggtgaaggtgttgttaaagagatttttaaccgctat |
32626857 |
T |
|
| Q |
101 |
aa |
102 |
Q |
| |
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|| |
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| T |
32626856 |
aa |
32626855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 32702737 - 32702691
Alignment:
| Q |
3 |
atggatacaatgtggcacaatgcataagggctgtggctgaacctttg |
49 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32702737 |
atggatacgatgtggcacaatgcataagggctgtggctgaacctttg |
32702691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 7292180 - 7292132
Alignment:
| Q |
23 |
tgcataagggctgtggctgaacctttgctagctactcactttggtgaag |
71 |
Q |
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||||| || ||||||| |||||||||||||| || |||||||||||||| |
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| T |
7292180 |
tgcattagagctgtggttgaacctttgctagttagtcactttggtgaag |
7292132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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