View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8819_low_2 (Length: 502)

Name: NF8819_low_2
Description: NF8819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8819_low_2
NF8819_low_2
[»] chr8 (24 HSPs)
chr8 (3-389)||(10279365-10279750)
chr8 (10-132)||(17888052-17888174)
chr8 (3-132)||(8358752-8358881)
chr8 (107-176)||(35225944-35226013)
chr8 (280-342)||(759871-759933)
chr8 (107-178)||(12157181-12157256)
chr8 (107-178)||(19262657-19262732)
chr8 (278-315)||(16307356-16307393)
chr8 (278-315)||(37250749-37250786)
chr8 (56-145)||(41527035-41527124)
chr8 (56-148)||(15342303-15342395)
chr8 (56-148)||(15431368-15431460)
chr8 (56-148)||(15522672-15522764)
chr8 (275-314)||(16311105-16311144)
chr8 (279-310)||(32917368-32917399)
chr8 (275-314)||(34802979-34803018)
chr8 (51-89)||(18430871-18430909)
chr8 (64-134)||(38290544-38290614)
chr8 (56-130)||(43215553-43215627)
chr8 (278-315)||(10901023-10901060)
chr8 (278-315)||(16249620-16249657)
chr8 (278-315)||(16312830-16312867)
chr8 (278-315)||(34801284-34801321)
chr8 (261-309)||(32918215-32918263)
[»] chr4 (16 HSPs)
chr4 (10-156)||(13918224-13918370)
chr4 (56-145)||(6554533-6554622)
chr4 (18-146)||(37530085-37530212)
chr4 (64-132)||(316508-316576)
chr4 (1-132)||(6559827-6559958)
chr4 (278-323)||(35695693-35695738)
chr4 (278-315)||(55050497-55050534)
chr4 (39-98)||(48683524-48683583)
chr4 (275-314)||(55051600-55051639)
chr4 (57-134)||(285103-285180)
chr4 (278-315)||(26289579-26289616)
chr4 (3-123)||(55051911-55052032)
chr4 (107-167)||(4236391-4236451)
chr4 (107-167)||(4279722-4279782)
chr4 (56-132)||(42727175-42727251)
chr4 (56-121)||(52542093-52542160)
[»] chr6 (14 HSPs)
chr6 (15-162)||(15878817-15878964)
chr6 (58-148)||(9449611-9449701)
chr6 (56-134)||(4852811-4852889)
chr6 (56-134)||(11554389-11554467)
chr6 (107-155)||(10191104-10191152)
chr6 (56-130)||(1599848-1599922)
chr6 (278-315)||(20872935-20872972)
chr6 (275-314)||(9449955-9449994)
chr6 (260-315)||(21985960-21986015)
chr6 (56-134)||(24397919-24397996)
chr6 (3-132)||(18089938-18090067)
chr6 (278-315)||(23409670-23409707)
chr6 (107-147)||(2953185-2953225)
chr6 (275-315)||(21055743-21055783)
[»] chr5 (11 HSPs)
chr5 (57-149)||(3008216-3008310)
chr5 (51-147)||(3009391-3009489)
chr5 (278-315)||(4062611-4062648)
chr5 (278-315)||(7332521-7332558)
chr5 (59-148)||(11769770-11769859)
chr5 (275-314)||(4063709-4063748)
chr5 (56-143)||(9024946-9025033)
chr5 (260-315)||(23570923-23570978)
chr5 (275-314)||(29863730-29863769)
chr5 (3-123)||(4064019-4064140)
chr5 (278-315)||(29865455-29865492)
[»] chr3 (11 HSPs)
chr3 (3-132)||(20779566-20779695)
chr3 (56-148)||(10020102-10020194)
chr3 (83-155)||(40416275-40416347)
chr3 (96-159)||(10021092-10021155)
chr3 (96-161)||(32971201-32971266)
chr3 (107-158)||(51083-51134)
chr3 (96-159)||(10021811-10021874)
chr3 (260-310)||(32264759-32264809)
chr3 (278-315)||(19816985-19817022)
chr3 (226-315)||(40057311-40057400)
chr3 (283-323)||(9264817-9264857)
[»] chr7 (6 HSPs)
chr7 (3-153)||(18290421-18290571)
chr7 (107-176)||(36837376-36837445)
chr7 (1-142)||(6678296-6678437)
chr7 (278-315)||(29913043-29913080)
chr7 (56-134)||(42078961-42079041)
chr7 (107-147)||(43989679-43989719)
[»] chr1 (10 HSPs)
chr1 (18-146)||(28963486-28963613)
chr1 (226-315)||(7843824-7843913)
chr1 (107-142)||(3982724-3982759)
chr1 (275-314)||(17001519-17001558)
chr1 (260-315)||(19103057-19103112)
chr1 (275-314)||(34161702-34161741)
chr1 (107-137)||(47783153-47783183)
chr1 (278-315)||(17006075-17006112)
chr1 (64-132)||(31089550-31089618)
chr1 (65-173)||(49882679-49882787)
[»] scaffold2049 (1 HSPs)
scaffold2049 (15-146)||(212-342)
[»] scaffold0012 (1 HSPs)
scaffold0012 (15-146)||(94714-94844)
[»] chr2 (12 HSPs)
chr2 (5-132)||(20106611-20106738)
chr2 (64-132)||(31963709-31963777)
chr2 (56-130)||(5788097-5788171)
chr2 (64-136)||(14905101-14905171)
chr2 (56-145)||(31965846-31965935)
chr2 (107-147)||(17680963-17681003)
chr2 (56-130)||(41754007-41754081)
chr2 (56-130)||(45661109-45661183)
chr2 (243-311)||(5788410-5788478)
chr2 (98-134)||(36720076-36720112)
chr2 (283-323)||(45055177-45055217)
chr2 (283-323)||(45660634-45660674)
[»] scaffold0114 (2 HSPs)
scaffold0114 (56-145)||(37032-37121)
scaffold0114 (56-157)||(1350-1449)
[»] scaffold0284 (1 HSPs)
scaffold0284 (1-132)||(7537-7668)
[»] scaffold0051 (1 HSPs)
scaffold0051 (108-175)||(18270-18337)
[»] scaffold0159 (2 HSPs)
scaffold0159 (56-130)||(32470-32544)
scaffold0159 (243-311)||(32783-32851)
[»] scaffold0107 (1 HSPs)
scaffold0107 (97-143)||(43666-43712)
[»] scaffold0380 (1 HSPs)
scaffold0380 (59-130)||(15272-15343)
[»] scaffold0169 (1 HSPs)
scaffold0169 (264-322)||(3686-3744)
[»] scaffold0119 (1 HSPs)
scaffold0119 (281-315)||(41046-41080)
[»] scaffold0211 (1 HSPs)
scaffold0211 (56-145)||(18458-18547)
[»] scaffold1345 (1 HSPs)
scaffold1345 (107-147)||(1845-1885)
[»] scaffold0216 (1 HSPs)
scaffold0216 (56-132)||(29169-29245)


Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 3 - 389
Target Start/End: Complemental strand, 10279750 - 10279365
Alignment:
Q  3 tgagatggacatcacatctttacaaaaaacctgaaggcattagacatttggaccatctcatttatatgttgttgaaaatctactctttcatgtaatgtag 102  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10279750 tgagattgacatcacatctttacaaaaaacctgaaggcattagacatttggaccatctcatttatatgttgttgaaaatctactctttcatgtaatgtag 10279651  T
Q  103 aaggttaactcacacttgacacattaacatctattaatcaagtgtgtgactatccacgtctgtaagtatgtgacgataaggaatttgaacatgagagaga 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  10279650 aaggttaactcacacttgacacattaacatctattaatcaagtgtgcgactatccacgtctgtaattatgtgacgataaggaatttaaacatgagagaga 10279551  T
Q  203 cgataaggnnnnnnnnnntgtagtgtgtgttttgtctattagagtgtagggaataaagtgagttgatgatatttatatgagtttgttgaaggagttggag 302  Q
    ||||||||          |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10279550 cgataagg-aaaaaaaaatgtagtgtgtgttttgtctattagagtgtagggaataaagtgagttgaagatatttatatgagtttgttgaaggagttggag 10279452  T
Q  303 atttttgggtaataaatttacaccaaaattagacctaattgnnnnnnntgatacatcattgtaaaagatcaaaattgtagtaatttc 389  Q
    |||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| |||||||| |||||||||    
T  10279451 atttttgggtaataaatttacaccaaaattagacctaattgaaaaaaatgatacatcattgtaaaagaccaaaattgaagtaatttc 10279365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 132
Target Start/End: Complemental strand, 17888174 - 17888052
Alignment:
Q  10 gacatcacatctttacaaaaaacctgaaggcattagacatttggaccatctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggtta 109  Q
    |||| |||||||||||| ||||||| ||| |||||   |||| |  ||||||| |||||||||||| ||||||||||||| |||  | |||| || ||||    
T  17888174 gacaccacatctttacataaaaccttaagacattatgtatttcggtcatctcacttatatgttgttcaaaatctactcttccatccagtgtataatgtta 17888075  T
Q  110 actcacacttgacacattaacat 132  Q
    ||||||| |||||||||||||||    
T  17888074 actcacatttgacacattaacat 17888052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 3 - 132
Target Start/End: Original strand, 8358752 - 8358881
Alignment:
Q  3 tgagatggacatcacatctttacaaaaaacctgaaggcattagacatttggaccatctcatttatatgttgttgaaaatctactctttcatgtaatgtag 102  Q
    |||||| |||| ||||| |||||| ||||||| ||| |||||   |||| |  ||||||| |||||||||||| ||||||||||||| |||  | ||||     
T  8358752 tgagattgacaccacatatttacataaaaccttaagacattatgtatttcggtcatctcacttatatgttgttcaaaatctactcttccatcgagtgtat 8358851  T
Q  103 aaggttaactcacacttgacacattaacat 132  Q
    || ||||||||||| |||||||||||||||    
T  8358852 aacgttaactcacatttgacacattaacat 8358881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 35225944 - 35226013
Alignment:
Q  107 ttaactcacacttgacacattaacatctattaatcaagtgtgtgactatccacgtctgtaagtatgtgac 176  Q
    |||||||| ||||||||||||||||||| ||| |||||||||||||| |||| || ||||| ||||||||    
T  35225944 ttaactcatacttgacacattaacatcttttattcaagtgtgtgactctccaagtttgtaattatgtgac 35226013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 342
Target Start/End: Complemental strand, 759933 - 759871
Alignment:
Q  280 tgagtttgttgaaggagttggagatttttgggtaataaatttacaccaaaattagacctaatt 342  Q
    ||||||||||||||||||||| ||||||||| |||| |||||||   |||||||||| |||||    
T  759933 tgagtttgttgaaggagttggggatttttggataattaatttaccaaaaaattagacttaatt 759871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 12157256 - 12157181
Alignment:
Q  107 ttaactcacacttgacacattaacatctattaatcaagtgtgtgact----atccacgtctgtaagtatgtgacga 178  Q
    |||||||||| |||||||||||| |||| |||||||||||| |||||    ||||| |||||||| ||||||||||    
T  12157256 ttaactcacaattgacacattaatatcttttaatcaagtgtatgactctccatccatgtctgtaattatgtgacga 12157181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 19262657 - 19262732
Alignment:
Q  107 ttaactcacacttgacacattaacatctattaatcaagtgtgtgact----atccacgtctgtaagtatgtgacga 178  Q
    |||| |||||||||||| |||||||||| ||||||||||||| ||||    ||||| |||||||| ||||||||||    
T  19262657 ttaagtcacacttgacagattaacatcttttaatcaagtgtgcgactctccatccatgtctgtaattatgtgacga 19262732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 16307356 - 16307393
Alignment:
Q  278 tatgagtttgttgaaggagttggagatttttgggtaat 315  Q
    |||||||||||| |||||||||||||||||||||||||    
T  16307356 tatgagtttgttaaaggagttggagatttttgggtaat 16307393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 37250749 - 37250786
Alignment:
Q  278 tatgagtttgttgaaggagttggagatttttgggtaat 315  Q
    |||||||||||| |||||||||||||||||||||||||    
T  37250749 tatgagtttgttaaaggagttggagatttttgggtaat 37250786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 41527035 - 41527124
Alignment:
Q  56 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatctattaatcaagt 145  Q
    ||||||| ||||||||| || |||||||||||||  ||  | | |||||  ||||||||||||||||||||||| |||| ||| ||||||    
T  41527035 catctcacttatatgttattcaaaatctactcttctatccactatagaattttaactcacacttgacacattaatatctcttattcaagt 41527124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 148
Target Start/End: Original strand, 15342303 - 15342395
Alignment:
Q  56 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatctattaatcaagtgtg 148  Q
    ||||||| |||||||||||| ||||| || |||| |||  ||| || ||  ||||||||||||| | ||||||| |||| |||||||||||||    
T  15342303 catctcacttatatgttgttcaaaatgtaatcttccatccaatatataactttaactcacacttaatacattaatatctcttaatcaagtgtg 15342395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 148
Target Start/End: Original strand, 15431368 - 15431460
Alignment:
Q  56 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatctattaatcaagtgtg 148  Q
    ||||||| |||||||||||| ||||| || |||| |||  ||| || ||  ||||||||||||| | ||||||| |||| |||||||||||||    
T  15431368 catctcacttatatgttgttcaaaatgtaatcttccatccaatatataactttaactcacacttaatacattaatatctcttaatcaagtgtg 15431460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 148
Target Start/End: Original strand, 15522672 - 15522764
Alignment:
Q  56 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatctattaatcaagtgtg 148  Q
    ||||||| |||||||||||| ||||| || |||| |||  ||| || ||  ||||||||||||| | ||||||| |||| |||||||||||||    
T  15522672 catctcacttatatgttgttcaaaatgtaatcttccatccaatatataactttaactcacacttaatacattaatatctcttaatcaagtgtg 15522764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 314
Target Start/End: Original strand, 16311105 - 16311144
Alignment:
Q  275 ttatatgagtttgttgaaggagttggagatttttgggtaa 314  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  16311105 ttatatgagtttgttgaaggatttgaagatttttgggtaa 16311144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 310
Target Start/End: Complemental strand, 32917399 - 32917368
Alignment:
Q  279 atgagtttgttgaaggagttggagatttttgg 310  Q
    ||||||||||||||||||||||||||||||||    
T  32917399 atgagtttgttgaaggagttggagatttttgg 32917368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 314
Target Start/End: Complemental strand, 34803018 - 34802979
Alignment:
Q  275 ttatatgagtttgttgaaggagttggagatttttgggtaa 314  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  34803018 ttatatgagtttgttgaaggatttgaagatttttgggtaa 34802979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 89
Target Start/End: Original strand, 18430871 - 18430909
Alignment:
Q  51 tggaccatctcatttatatgttgttgaaaatctactctt 89  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  18430871 tggagcatctcatttatatgttgttgaaaatttactctt 18430909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 134
Target Start/End: Complemental strand, 38290614 - 38290544
Alignment:
Q  64 ttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatct 134  Q
    ||||||||| || || || | ||||| ||||||||||| ||   |||||||||||||||||||||||||||    
T  38290614 ttatatgtttttaaacattttctcttgcatgtaatgtaaaattataactcacacttgacacattaacatct 38290544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 130
Target Start/End: Original strand, 43215553 - 43215627
Alignment:
Q  56 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaac 130  Q
    ||||||| |||||||||| | || || ||||||| |||  |||||| ||||||||||||||| || |||||||||    
T  43215553 catctcacttatatgttgcttaatatttactcttgcatcaaatgtaaaaggttaactcacacatgtcacattaac 43215627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 10901023 - 10901060
Alignment:
Q  278 tatgagtttgttgaaggagttggagatttttgggtaat 315  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  10901023 tatgagtttgttgaaggagttggaaattattgggtaat 10901060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 16249620 - 16249657
Alignment:
Q  278 tatgagtttgttgaaggagttggagatttttgggtaat 315  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  16249620 tatgagtttgttaaaggagtttgagatttttgggtaat 16249657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 16312830 - 16312867
Alignment:
Q  278 tatgagtttgttgaaggagttggagatttttgggtaat 315  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  16312830 tatgagtttgttaaaggagtttgagatttttgggtaat 16312867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 34801321 - 34801284
Alignment:
Q  278 tatgagtttgttgaaggagttggagatttttgggtaat 315  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  34801321 tatgagtttgttaaaggagtttgagatttttgggtaat 34801284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 309
Target Start/End: Complemental strand, 32918263 - 32918215
Alignment:
Q  261 tgagttgatgatatttatatgagtttgttgaaggagttggagatttttg 309  Q
    ||||||| ||||| ||||||| |||||||||||||| ||||||| ||||    
T  32918263 tgagttgctgataattatatgggtttgttgaaggaggtggagatgtttg 32918215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 9e-25; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 10 - 156
Target Start/End: Complemental strand, 13918370 - 13918224
Alignment:
Q  10 gacatcacatctttacaaaaaacctgaaggcattagacatttggaccatctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggtta 109  Q
    |||| |||||||||||| ||||||| ||| |||||   |||| |  ||||||| |||||||||||||||||||||||||| |||  |||||| || ||||    
T  13918370 gacaccacatctttacataaaaccttaagacattatgtatttcggtcatctcaattatatgttgttgaaaatctactcttccatccaatgtataacgtta 13918271  T
Q  110 actcacacttgacacattaacatctattaatcaagtgtgtgactatc 156  Q
    ||||||| ||||||||||||||| |  |||| || ||||||||||||    
T  13918270 actcacatttgacacattaacatatcctaatgaattgtgtgactatc 13918224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 6554622 - 6554533
Alignment:
Q  56 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatctattaatcaagt 145  Q
    ||||||| ||||||||| || ||||||||||||| |||  | | |||||  |||||||||||||||||||||||||||| ||| ||||||    
T  6554622 catctcacttatatgttattcaaaatctactcttccatccactatagaattttaactcacacttgacacattaacatctcttattcaagt 6554533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 37530085 - 37530212
Alignment:
Q  18 atctttacaaaaaacctgaaggcattagacatttggaccatctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacac 117  Q
    ||||| ||| ||||||| |||||||| || |  |||| ||||||||| ||||| |||||||||| | ||||| |||   |||||||| || ||||| |||    
T  37530085 atcttaacacaaaaccttaaggcattggatacatggaacatctcatt-atatgctgttgaaaattttctcttccatccgatgtagaatgtcaactcgcac 37530183  T
Q  118 ttgacacattaacatctattaatcaagtg 146  Q
    ||||||||||||||||| ||||| |||||    
T  37530184 ttgacacattaacatctcttaatgaagtg 37530212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 316576 - 316508
Alignment:
Q  64 ttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacat 132  Q
    |||||||||| | ||||||||||||||||| ||||||| ||  ||||||| || |||||||||||||||    
T  316576 ttatatgttgctcaaaatctactctttcatctaatgtataattttaactcgcatttgacacattaacat 316508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 6559958 - 6559827
Alignment:
Q  1 aatgagatggacatcacatctttacaaaaaacctgaaggcattagacatttggaccatctcatttatatgttgttgaaaatctactctttcatgtaatgt 100  Q
    |||||||| |||| |||| ||| |||  |||||| |||  |||||| |||| |  ||||| | |||||||||| | ||||||||||||| ||| |||| |    
T  6559958 aatgagattgacaccacagcttcacatgaaaccttaagatattagatattttggtcatctgacttatatgttgctcaaaatctactcttccatctaatct 6559859  T
Q  101 agaaggttaactcacacttgacacattaacat 132  Q
    | || |||||||| || |||||||||||||||    
T  6559858 ataacgttaactcgcatttgacacattaacat 6559827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 278 - 323
Target Start/End: Complemental strand, 35695738 - 35695693
Alignment:
Q  278 tatgagtttgttgaaggagttggagatttttgggtaataaatttac 323  Q
    ||||||||| ||||||||||||||||||||||| |||||| |||||    
T  35695738 tatgagtttattgaaggagttggagatttttggataataactttac 35695693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 55050534 - 55050497
Alignment:
Q  278 tatgagtttgttgaaggagttggagatttttgggtaat 315  Q
    |||||||||||| |||||||||||||||||||||||||    
T  55050534 tatgagtttgttaaaggagttggagatttttgggtaat 55050497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 48683583 - 48683524
Alignment:
Q  39 gcattagacatttggaccatctcatttatatgttgttgaaaatctactctttcatgtaat 98  Q
    |||||||| || |||| |||||||| ||||||||||| ||||| ||||||||||| ||||    
T  48683583 gcattagatatatggatcatctcatctatatgttgttcaaaatatactctttcatttaat 48683524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 314
Target Start/End: Complemental strand, 55051639 - 55051600
Alignment:
Q  275 ttatatgagtttgttgaaggagttggagatttttgggtaa 314  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  55051639 ttatatgagtttgttgaaggatttgaagatttttgggtaa 55051600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 134
Target Start/End: Complemental strand, 285180 - 285103
Alignment:
Q  57 atctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatct 134  Q
    |||||| ||| |||||||| ||||||||||||| |||  ||  |||||| ||||||| ||| |||| |||||||||||    
T  285180 atctcacttacatgttgtttaaaatctactcttgcatccaacctagaagtttaactctcacatgacgcattaacatct 285103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 26289579 - 26289616
Alignment:
Q  278 tatgagtttgttgaaggagttggagatttttgggtaat 315  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  26289579 tatgagtttgttaaaggagtttgagatttttgggtaat 26289616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 123
Target Start/End: Complemental strand, 55052032 - 55051911
Alignment:
Q  3 tgagatggacatcacatctttacaaaaaacctgaaggcattagacatttggaccatctcatttatatg-ttgttgaaaatctactctttcatgtaatgta 101  Q
    |||||| |||| | |||||||| | ||||||| |||||||||||||| ||   ||||||| ||||||| || || ||||| ||||| | |||  ||||||    
T  55052032 tgagattgacaccgcatctttagataaaaccttaaggcattagacatatgagtcatctcacttatatgttttttcaaaatatactcatccatccaatgta 55051933  T
Q  102 gaaggttaactcacacttgaca 123  Q
    ||  | ||||||||||||||||    
T  55051932 gagtgctaactcacacttgaca 55051911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 167
Target Start/End: Original strand, 4236391 - 4236451
Alignment:
Q  107 ttaactcacacttgacacattaacatctattaatcaagtgtgtgactatccacgtctgtaa 167  Q
    |||| |||||||||| |||| ||||| | |||||||| ||||| ||| |||||||||||||    
T  4236391 ttaattcacacttgatacatcaacatttgttaatcaattgtgtaactctccacgtctgtaa 4236451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 167
Target Start/End: Original strand, 4279722 - 4279782
Alignment:
Q  107 ttaactcacacttgacacattaacatctattaatcaagtgtgtgactatccacgtctgtaa 167  Q
    |||| |||||||||| |||| ||||| | |||||||| ||||| ||| |||||||||||||    
T  4279722 ttaattcacacttgatacatcaacatttgttaatcaattgtgtaactctccacgtctgtaa 4279782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 132
Target Start/End: Original strand, 42727175 - 42727251
Alignment:
Q  56 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacat 132  Q
    |||||||  |||||||| || || |||||||| ||||| || |||||||  |||||||| | |||||||||||||||    
T  42727175 catctcacatatatgttattcaatatctactcattcatctattgtagaactttaactcatatttgacacattaacat 42727251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 52542093 - 52542160
Alignment:
Q  56 catctcatttatatgttgttgaaaatctactctttcatgta--atgtagaaggttaactcacacttga 121  Q
    |||||||||| ||| ||| | |||||||||||||||||  |  |||||||| ||||||||||||||||    
T  52542093 catctcatttctatcttgatcaaaatctactctttcatccaatatgtagaatgttaactcacacttga 52542160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 162
Target Start/End: Complemental strand, 15878964 - 15878817
Alignment:
Q  15 cacatctttacaaaaaacctgaaggcattagacatttggaccatctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactca 114  Q
    |||||||||||| ||||||| ||| |||||    ||| |  ||||||| |||||||||||| ||||||||||||| |||  |||||| || |||||||||    
T  15878964 cacatctttacagaaaaccttaagacattatgtgtttcggtcatctcaattatatgttgttcaaaatctactcttccatccaatgtataacgttaactca 15878865  T
Q  115 cacttgacacattaacatctattaatcaagtgtgtgactatccacgtc 162  Q
    || ||||||||||||||| |  |||| || |||||||||||| |||||    
T  15878864 catttgacacattaacatatcctaatgaattgtgtgactatctacgtc 15878817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 9449611 - 9449701
Alignment:
Q  58 tctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatctattaatcaagtgtg 148  Q
    ||||| ||||||||| || ||||| ||||| | |||  ||||||||| | ||||||||||||||||| ||||||||| |||||||||||||    
T  9449611 tctcacttatatgtttttcaaaatatactcatccatccaatgtagaatggtaactcacacttgacacgttaacatctcttaatcaagtgtg 9449701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 4852889 - 4852811
Alignment:
Q  56 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatct 134  Q
    ||||||| | |||||||||| || | |||||| | |||  |||||||||||||||||||||| ||||||||||||||||    
T  4852889 catctcactaatatgttgtttaacaactactcctgcatccaatgtagaaggttaactcacacatgacacattaacatct 4852811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 56 - 134
Target Start/End: Original strand, 11554389 - 11554467
Alignment:
Q  56 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatct 134  Q
    ||||||| | |||||||||| || | |||||| | |||  |||||||||||||||||||||| ||||||||||||||||    
T  11554389 catctcactaatatgttgtttaacaactactcctgcatccaatgtagaaggttaactcacacatgacacattaacatct 11554467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 10191152 - 10191104
Alignment:
Q  107 ttaactcacacttgacacattaacatctattaatcaagtgtgtgactat 155  Q
    ||||||||||||||| |||||||||||| ||||||||||||| ||||||    
T  10191152 ttaactcacacttgatacattaacatcttttaatcaagtgtgcgactat 10191104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 130
Target Start/End: Complemental strand, 1599922 - 1599848
Alignment:
Q  56 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaac 130  Q
    |||||||||||||||||| | || |||||||||| ||| ||||||| ||| |||| | |||| ||||||||||||    
T  1599922 catctcatttatatgttgctcaatatctactcttacatataatgtataagtttaaatgacacatgacacattaac 1599848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 20872972 - 20872935
Alignment:
Q  278 tatgagtttgttgaaggagttggagatttttgggtaat 315  Q
    |||||||||||| |||||||||||||||||||||||||    
T  20872972 tatgagtttgttaaaggagttggagatttttgggtaat 20872935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 314
Target Start/End: Original strand, 9449955 - 9449994
Alignment:
Q  275 ttatatgagtttgttgaaggagttggagatttttgggtaa 314  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  9449955 ttatatgagtttgttgaaggatttgaagatttttgggtaa 9449994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 315
Target Start/End: Complemental strand, 21986015 - 21985960
Alignment:
Q  260 gtgagttgatgatatttatatgagtttgttgaaggagttggagatttttgggtaat 315  Q
    |||||||| |||||  | |||||||||||||||||||||| |||||||||| ||||    
T  21986015 gtgagttgttgataaatctatgagtttgttgaaggagttgaagatttttggataat 21985960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 24397996 - 24397919
Alignment:
Q  56 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatct 134  Q
    |||||||||||||||||| | || || ||||  ||| | ||||||||||| ||||||||||| ||||||||||| ||||    
T  24397996 catctcatttatatgttgctcaatatatactaattcgtctaatgtagaag-ttaactcacacatgacacattaatatct 24397919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 132
Target Start/End: Original strand, 18089938 - 18090067
Alignment:
Q  3 tgagatggacatcacatctttacaaaaaacctgaaggcattagacatttggaccatctcatttatatgttgttgaaaatctactctttcatgtaatgtag 102  Q
    |||||| |||| |||||||| ||  ||||||| ||||||||||  || | |  ||||||| |||||||||  |||| ||||||||||||| | ||| |||    
T  18089938 tgagattgacaccacatcttcacccaaaaccttaaggcattaggtatattgttcatctcaattatatgtttctgaacatctactctttcaaggaatatag 18090037  T
Q  103 aaggttaactcacacttgacacattaacat 132  Q
    ||  |||| | ||| |||||| ||||||||    
T  18090038 aactttaagtgacaattgacatattaacat 18090067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 23409670 - 23409707
Alignment:
Q  278 tatgagtttgttgaaggagttggagatttttgggtaat 315  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  23409670 tatgagtttgttaaaggagtttgagatttttgggtaat 23409707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 2953225 - 2953185
Alignment:
Q  107 ttaactcacacttgacacattaacatctattaatcaagtgt 147  Q
    |||||||||||||||||||  ||||||||| ||||||||||    
T  2953225 ttaactcacacttgacacaacaacatctatcaatcaagtgt 2953185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 21055743 - 21055783
Alignment:
Q  275 ttatatgagtttgttgaaggagttggagatttttgggtaat 315  Q
    |||| ||| |||||||||||||||| |||||||||||||||    
T  21055743 ttatgtgattttgttgaaggagttgaagatttttgggtaat 21055783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 57 - 149
Target Start/End: Original strand, 3008216 - 3008310
Alignment:
Q  57 atctcatttatatgttgttgaaaatctactctttcatgtaat--gtagaaggttaactcacacttgacacattaacatctattaatcaagtgtgt 149  Q
    ||||||||||||||||| | |||||||||||||||||  |||  |||||| ||||||||||||||||||| ||||||| | ||||||||| ||||    
T  3008216 atctcatttatatgttgatcaaaatctactctttcatcaaatacgtagaacgttaactcacacttgacacgttaacatattttaatcaagcgtgt 3008310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 147
Target Start/End: Original strand, 3009391 - 3009489
Alignment:
Q  51 tggaccatctcatttatatgttgttgaaaatctactctttcatgtaat--gtagaaggttaactcacacttgacacattaacatctattaatcaagtgt 147  Q
    |||| ||| |||||||||||||| | |||||||||| ||||||  |||  |||||| |||||||||||||||||||||||  || | ||||||||||||    
T  3009391 tggatcatttcatttatatgttgatcaaaatctactttttcatccaatatgtagaacgttaactcacacttgacacattattatattttaatcaagtgt 3009489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 4062648 - 4062611
Alignment:
Q  278 tatgagtttgttgaaggagttggagatttttgggtaat 315  Q
    |||||||||||| |||||||||||||||||||||||||    
T  4062648 tatgagtttgttaaaggagttggagatttttgggtaat 4062611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 7332521 - 7332558
Alignment:
Q  278 tatgagtttgttgaaggagttggagatttttgggtaat 315  Q
    |||||||||||| |||||||||||||||||||||||||    
T  7332521 tatgagtttgttaaaggagttggagatttttgggtaat 7332558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 148
Target Start/End: Original strand, 11769770 - 11769859
Alignment:
Q  59 ctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatctattaatcaagtgtg 148  Q
    |||| |||| ||||| | ||||||||||||| |||  ||| | |||  |||||| | ||||||||||||||||||| |||||||||||||    
T  11769770 ctcagttatgtgttgatcaaaatctactcttccatccaattttgaactttaactaatacttgacacattaacatctcttaatcaagtgtg 11769859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 314
Target Start/End: Complemental strand, 4063748 - 4063709
Alignment:
Q  275 ttatatgagtttgttgaaggagttggagatttttgggtaa 314  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  4063748 ttatatgagtttgttgaaggatttgaagatttttgggtaa 4063709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 143
Target Start/End: Complemental strand, 9025033 - 9024946
Alignment:
Q  56 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatctattaatcaa 143  Q
    ||||||| ||||||||| || |||||||||||||  ||  | | || ||  |||||||||||||||||||||||||||| ||| ||||    
T  9025033 catctcacttatatgttattcaaaatctactcttctatccactatataattttaactcacacttgacacattaacatctcttattcaa 9024946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 315
Target Start/End: Original strand, 23570923 - 23570978
Alignment:
Q  260 gtgagttgatgatatttatatgagtttgttgaaggagttggagatttttgggtaat 315  Q
    |||||||| |||||  | |||||||||||||||||||||| |||||||||| ||||    
T  23570923 gtgagttgttgataaatctatgagtttgttgaaggagttgaagatttttggataat 23570978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 314
Target Start/End: Original strand, 29863730 - 29863769
Alignment:
Q  275 ttatatgagtttgttgaaggagttggagatttttgggtaa 314  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  29863730 ttatatgagtttgttgaaggatttgaagatttttgggtaa 29863769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 123
Target Start/End: Complemental strand, 4064140 - 4064019
Alignment:
Q  3 tgagatggacatcacatctttacaaaaaacctgaaggcattagacatttggaccatctcatttatatg-ttgttgaaaatctactctttcatgtaatgta 101  Q
    |||||| |||| | |||||||| | ||||||| |||||||||||||| ||   ||||||| ||||||| || || ||||| ||||| | |||  ||||||    
T  4064140 tgagattgacaccgcatctttagataaaaccttaaggcattagacatatgagtcatctcacttatatgttttttcaaaatatactcatccatccaatgta 4064041  T
Q  102 gaaggttaactcacacttgaca 123  Q
    ||  | ||||||||||||||||    
T  4064040 gagtggtaactcacacttgaca 4064019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 29865455 - 29865492
Alignment:
Q  278 tatgagtttgttgaaggagttggagatttttgggtaat 315  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  29865455 tatgagtttgttaaaggagtttgagatttttgggtaat 29865492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 20779695 - 20779566
Alignment:
Q  3 tgagatggacatcacatctttacaaaaaacctgaaggcattagacatttggaccatctcatttatatgttgttgaaaatctactctttcatgtaatgtag 102  Q
    |||||| |||| ||||| |||||| ||||||| ||| |||||   |||| |  ||||||| |||||||||||| ||||||||||||| |||  | ||||     
T  20779695 tgagattgacaccacatatttacataaaacctcaagacattatgtatttcggtcatctcacttatatgttgttcaaaatctactcttccatccagtgtat 20779596  T
Q  103 aaggttaactcacacttgacacattaacat 132  Q
    || ||||||||||| |||||||||||||||    
T  20779595 aatgttaactcacatttgacacattaacat 20779566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 56 - 148
Target Start/End: Complemental strand, 10020194 - 10020102
Alignment:
Q  56 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatctattaatcaagtgtg 148  Q
    ||||||| |||||||||||| ||||||||| ||| |||  ||| |||||   ||| |||||||||| || |||||||||||||||||||||||    
T  10020194 catctcacttatatgttgttcaaaatctacccttccattcaatatagaactctaaatcacacttgatacgttaacatctattaatcaagtgtg 10020102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 40416347 - 40416275
Alignment:
Q  83 tactctttcatgtaatgtagaaggttaactcacacttgacacattaacatctattaatcaagtgtgtgactat 155  Q
    |||| ||||||  ||||||||| || |||||| |||| |||||||||||||| ||||||||||||||||||||    
T  40416347 tactatttcatccaatgtagaacgtcaactcatacttaacacattaacatctcttaatcaagtgtgtgactat 40416275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 96 - 159
Target Start/End: Complemental strand, 10021155 - 10021092
Alignment:
Q  96 aatgtagaaggttaactcacacttgacacattaacatctattaatcaagtgtgtgactatccac 159  Q
    ||||||||| || |||||||||||||| ||||||||||| || |||||||||| ||||||||||    
T  10021155 aatgtagaacgtaaactcacacttgactcattaacatctctttatcaagtgtgcgactatccac 10021092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 32971201 - 32971266
Alignment:
Q  96 aatgtagaaggttaactcacacttgacacattaacatctattaatcaagtgtgtgactatccacgt 161  Q
    ||||||||| || |||||||||||||| ||||||||||  || |||||||||| ||||||||||||    
T  32971201 aatgtagaacgtaaactcacacttgactcattaacatcgctttatcaagtgtgcgactatccacgt 32971266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 107 - 158
Target Start/End: Complemental strand, 51134 - 51083
Alignment:
Q  107 ttaactcacacttgacacattaacatctattaatcaagtgtgtgactatcca 158  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||| ||||    
T  51134 ttaagtcacacttgacagattaacatcttttaatcaagtgtgtgactctcca 51083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 96 - 159
Target Start/End: Complemental strand, 10021874 - 10021811
Alignment:
Q  96 aatgtagaaggttaactcacacttgacacattaacatctattaatcaagtgtgtgactatccac 159  Q
    ||||||||| || |||||||||||||| ||||||||||| || |||||||||  ||||||||||    
T  10021874 aatgtagaacgtaaactcacacttgactcattaacatctctttatcaagtgttcgactatccac 10021811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 310
Target Start/End: Original strand, 32264759 - 32264809
Alignment:
Q  260 gtgagttgatgatatttatatgagtttgttgaaggagttggagatttttgg 310  Q
    |||||||| || || |||| |||||||||||||||| ||||||||||||||    
T  32264759 gtgagttgctggtaattatttgagtttgttgaaggacttggagatttttgg 32264809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 19816985 - 19817022
Alignment:
Q  278 tatgagtttgttgaaggagttggagatttttgggtaat 315  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  19816985 tatgagtttgttaaaggagtttgagatttttgggtaat 19817022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 315
Target Start/End: Complemental strand, 40057400 - 40057311
Alignment:
Q  226 tgtgtgttttgtctattagagtgtagggaataaagtgagttgatgatatttatatgagtttgttgaaggagttggagatttttgggtaat 315  Q
    |||||||||||| | | ||||| | || ||||  |||||||| |||||  | || ||||||||||||| |||||||||||||||| ||||    
T  40057400 tgtgtgttttgtttgtgagagtattggaaatagtgtgagttgttgataaatctacgagtttgttgaagaagttggagatttttggataat 40057311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 323
Target Start/End: Complemental strand, 9264857 - 9264817
Alignment:
Q  283 gtttgttgaaggagttggagatttttgggtaataaatttac 323  Q
    |||||||||||||||| ||||| |||||||||| |||||||    
T  9264857 gtttgttgaaggagtttgagatatttgggtaattaatttac 9264817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 3 - 153
Target Start/End: Original strand, 18290421 - 18290571
Alignment:
Q  3 tgagatggacatcacatctttacaaaaaacctgaaggcattagacatttggaccatctcatttatatgttgttgaaaatctactctttcatgtaatgtag 102  Q
    |||||| |||| |||||||||||| ||||||| ||| |||||   |||| |  ||||||| |||||||||||| ||||||||||||| |||  | ||||     
T  18290421 tgagattgacaccacatctttacataaaaccttaagacattatgtatttcggtcatctcacttatatgttgtttaaaatctactcttccatccagtgtat 18290520  T
Q  103 aaggttaactcacacttgacacattaacatctattaatcaagtgtgtgact 153  Q
    |  ||||||||||| ||| ||||| ||||| |  ||||||| |||||||||    
T  18290521 accgttaactcacatttgtcacatcaacatatcctaatcaattgtgtgact 18290571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 36837376 - 36837445
Alignment:
Q  107 ttaactcacacttgacacattaacatctattaatcaagtgtgtgactatccacgtctgtaagtatgtgac 176  Q
    |||||| |||||| |||||||||||||| |||||||||||| ||| | || |||||||||| ||||||||    
T  36837376 ttaactaacacttaacacattaacatctcttaatcaagtgtttgattctctacgtctgtaattatgtgac 36837445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 6678296 - 6678437
Alignment:
Q  1 aatgagatggacatcacatctttacaaaaaacctgaaggcattagacatttggaccatctcatttatatgttgttgaaaatctactctttcatgtaatgt 100  Q
    ||||||||  |||| ||||||| ||| ||||||| || ||||| |  || |||||||| |||||||||||||||| |||||||| | || |||  ||||     
T  6678296 aatgagatttacattacatcttcacacaaaaccttaatgcatttgctatatggaccatgtcatttatatgttgttaaaaatctatttttccatccaatgc 6678395  T
Q  101 agaaggttaactcacacttgacacattaacatctattaatca 142  Q
    | ||  |||||||| | ||||||||  ||||||| |||||||    
T  6678396 aaaacattaactcataattgacacaccaacatctgttaatca 6678437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 29913080 - 29913043
Alignment:
Q  278 tatgagtttgttgaaggagttggagatttttgggtaat 315  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  29913080 tatgagtttgttaaaggagttggagatatttgggtaat 29913043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 134
Target Start/End: Original strand, 42078961 - 42079041
Alignment:
Q  56 catctcatttatatgttgttgaaaatctactctttcatgtaatgta--gaaggttaactcacacttgacacattaacatct 134  Q
    ||||||| ||| |||||| | || |||||||||| |||  ||||||  |||| ||||||||||| ||||||||||||||||    
T  42078961 catctcacttacatgttgctcaatatctactcttgcatcaaatgtatagaagtttaactcacacatgacacattaacatct 42079041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 43989719 - 43989679
Alignment:
Q  107 ttaactcacacttgacacattaacatctattaatcaagtgt 147  Q
    |||||||||||||||||||||||||||| | ||| ||||||    
T  43989719 ttaactcacacttgacacattaacatctctcaattaagtgt 43989679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 28963613 - 28963486
Alignment:
Q  18 atctttacaaaaaacctgaaggcattagacatttggaccatctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacac 117  Q
    ||||| ||| ||||||| |||||||| || |  |||| ||||||||| ||||| |||||||||| | ||||| |||   |||||||| || ||||| |||    
T  28963613 atcttaacacaaaaccttaaggcattggatacatggaacatctcatt-atatgctgttgaaaattttctcttccatccgatgtagaatgtcaactcgcac 28963515  T
Q  118 ttgacacattaacatctattaatcaagtg 146  Q
    ||||||||||||||||| ||||| |||||    
T  28963514 ttgacacattaacatctcttaatgaagtg 28963486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 315
Target Start/End: Original strand, 7843824 - 7843913
Alignment:
Q  226 tgtgtgttttgtctattagagtgtagggaataaagtgagttgatgatatttatatgagtttgttgaaggagttggagatttttgggtaat 315  Q
    |||||||||||| | | ||||| |||| ||||  |||||||| |||||  | || ||||||||||||| |||||||||||||||| ||||    
T  7843824 tgtgtgttttgtttgtgagagtataggaaatagtgtgagttgttgataaatctacgagtttgttgaagaagttggagatttttggataat 7843913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 142
Target Start/End: Complemental strand, 3982759 - 3982724
Alignment:
Q  107 ttaactcacacttgacacattaacatctattaatca 142  Q
    |||||||||||||||||||||||||||| |||||||    
T  3982759 ttaactcacacttgacacattaacatctcttaatca 3982724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 314
Target Start/End: Original strand, 17001519 - 17001558
Alignment:
Q  275 ttatatgagtttgttgaaggagttggagatttttgggtaa 314  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  17001519 ttatatgagtttgttgaaggatttgaagatttttgggtaa 17001558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 315
Target Start/End: Original strand, 19103057 - 19103112
Alignment:
Q  260 gtgagttgatgatatttatatgagtttgttgaaggagttggagatttttgggtaat 315  Q
    |||||||| |||||  | |||||||||||||||||||||| |||||||||| ||||    
T  19103057 gtgagttgttgataaatctatgagtttgttgaaggagttgaagatttttggataat 19103112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 314
Target Start/End: Complemental strand, 34161741 - 34161702
Alignment:
Q  275 ttatatgagtttgttgaaggagttggagatttttgggtaa 314  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  34161741 ttatatgagtttgttgaaggatttgaagatttttgggtaa 34161702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 137
Target Start/End: Complemental strand, 47783183 - 47783153
Alignment:
Q  107 ttaactcacacttgacacattaacatctatt 137  Q
    |||||||||||||||||||||||||||||||    
T  47783183 ttaactcacacttgacacattaacatctatt 47783153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 17006075 - 17006112
Alignment:
Q  278 tatgagtttgttgaaggagttggagatttttgggtaat 315  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  17006075 tatgagtttgttaaaggagttagagatttttgggtaat 17006112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 31089550 - 31089618
Alignment:
Q  64 ttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacat 132  Q
    |||||||||| | ||||| |||||||||||  |||||||||  |||||| |||  ||||||||||||||    
T  31089550 ttatatgttgctcaaaatatactctttcatccaatgtagaaatttaacttacatatgacacattaacat 31089618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 173
Target Start/End: Complemental strand, 49882787 - 49882679
Alignment:
Q  65 tatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatctattaatcaagtgtgtgactatccacgtctg 164  Q
    ||||||||| | |||||||||| || |||  | |||| || ||||||||  | ||||||||||||||| |  ||||||| |||||| ||||| ||||| |    
T  49882787 tatatgttgctcaaaatctactattccatccattgtataacgttaactcgtatttgacacattaacatatcctaatcaattgtgtgtctatctacgtccg 49882688  T
Q  165 taagtatgt 173  Q
    ||| |||||    
T  49882687 taattatgt 49882679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2049 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold2049
Description:

Target: scaffold2049; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 146
Target Start/End: Original strand, 212 - 342
Alignment:
Q  15 cacatctttacaaaaaacctgaaggcattagacatttggaccatctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactca 114  Q
    ||||| || ||| ||||||| |||||||| || |  | || ||||||||| |||||||||||||||| | ||||| |||   |||||||| || ||||||    
T  212 cacattttaacacaaaaccttaaggcattggatacatcgaacatctcatt-atatgttgttgaaaattttctcttccatccgatgtagaatgtcaactca 310  T
Q  115 cacttgacacattaacatctattaatcaagtg 146  Q
    |||||| ||||||||||||| ||||| |||||    
T  311 cacttggcacattaacatctcttaatgaagtg 342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 146
Target Start/End: Original strand, 94714 - 94844
Alignment:
Q  15 cacatctttacaaaaaacctgaaggcattagacatttggaccatctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactca 114  Q
    ||||| || ||| ||||||| |||||||| || |  | || ||||||||| |||||||||||||||| | ||||| |||   |||||||| || ||||||    
T  94714 cacattttaacacaaaaccttaaggcattggatacatcgaacatctcatt-atatgttgttgaaaattttctcttccatccgatgtagaatgtcaactca 94812  T
Q  115 cacttgacacattaacatctattaatcaagtg 146  Q
    |||||| ||||||||||||| ||||| |||||    
T  94813 cacttggcacattaacatctcttaatgaagtg 94844  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 20106611 - 20106738
Alignment:
Q  5 agatggacatcacatctttacaaaaaacctgaaggcattagacatttggaccatctcatttatatgttgttgaaaatctactctttcatgtaatgtagaa 104  Q
    |||| |||| ||||| |||||| ||||||| ||| |||||   |||| |  ||||||| |||||| || || ||||||||||||| |||  |||||| ||    
T  20106611 agattgacaccacatatttacataaaaccttaagacattatgtattttggtcatctcacttatattttattcaaaatctactcttccatccaatgtataa 20106710  T
Q  105 ggttaactcacacttgacacattaacat 132  Q
     ||||||||||| |||||||||||||||    
T  20106711 cgttaactcacatttgacacattaacat 20106738  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 31963709 - 31963777
Alignment:
Q  64 ttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacat 132  Q
    |||||||||| | ||||||||||||| ||| ||||||| || |||||||| || |||||||||||||||    
T  31963709 ttatatgttgctcaaaatctactcttccatctaatgtataaagttaactcgcatttgacacattaacat 31963777  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 130
Target Start/End: Original strand, 5788097 - 5788171
Alignment:
Q  56 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaac 130  Q
    ||||||| |||||||||| | || || ||||||| ||| ||||||||||| |||| |||||| ||||||||||||    
T  5788097 catctcacttatatgttgctcaatatatactcttacatataatgtagaagtttaaatcacacgtgacacattaac 5788171  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 14905171 - 14905101
Alignment:
Q  64 ttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatctat 136  Q
    ||||||||||||  ||||||||||||||||  ||| || ||  |||||||||||||||||||| |||||||||    
T  14905171 ttatatgttgtt--aaatctactctttcatccaatataaaactttaactcacacttgacacatcaacatctat 14905101  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 31965846 - 31965935
Alignment:
Q  56 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatctattaatcaagt 145  Q
    ||||||| ||||||||| || |||||||||||||  || || | |||||  |||||||| ||||||||||||||| ||| ||| ||||||    
T  31965846 catctcacttatatgttattcaaaatctactcttctatctactatagaattttaactcatacttgacacattaacttctcttattcaagt 31965935  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 17680963 - 17681003
Alignment:
Q  107 ttaactcacacttgacacattaacatctattaatcaagtgt 147  Q
    ||||||||||||||| |||||||||||| ||||||||||||    
T  17680963 ttaactcacacttgatacattaacatcttttaatcaagtgt 17681003  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 130
Target Start/End: Original strand, 41754007 - 41754081
Alignment:
Q  56 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaac 130  Q
    ||||||| |||||||||| | || |||||||||| ||| ||||||| ||| |||| | |||| ||||||||||||    
T  41754007 catctcacttatatgttgctcaatatctactcttacatataatgtataagtttaaatgacacatgacacattaac 41754081  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 130
Target Start/End: Complemental strand, 45661183 - 45661109
Alignment:
Q  56 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaac 130  Q
    ||||||| |||||||||| | || || ||||||| |||  |||||| ||||||||||||||| || |||||||||    
T  45661183 catctcacttatatgttgcttaatatttactcttgcatcaaatgtaaaaggttaactcacacatgtcacattaac 45661109  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 311
Target Start/End: Original strand, 5788410 - 5788478
Alignment:
Q  243 agagtgtagggaataaagtgagttgatgatatttatatgagtttgttgaaggagttggagatttttggg 311  Q
    ||||| ||||||||||| ||| ||| || || || ||||| |||||||||||||||||| ||| |||||    
T  5788410 agagtatagggaataaaatgatttgctggtaattttatgaatttgttgaaggagttggaaattattggg 5788478  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 36720112 - 36720076
Alignment:
Q  98 tgtagaaggttaactcacacttgacacattaacatct 134  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36720112 tgtagaattttaactcacacttgacacattaacatct 36720076  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 45055177 - 45055217
Alignment:
Q  283 gtttgttgaaggagttggagatttttgggtaataaatttac 323  Q
    |||||||||||||||| ||||| |||||||||| |||||||    
T  45055177 gtttgttgaaggagtttgagatatttgggtaattaatttac 45055217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 323
Target Start/End: Complemental strand, 45660674 - 45660634
Alignment:
Q  283 gtttgttgaaggagttggagatttttgggtaataaatttac 323  Q
    |||||||||||||||| ||||| |||||||||| |||||||    
T  45660674 gtttgttgaaggagtttgagatatttgggtaattaatttac 45660634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 37121 - 37032
Alignment:
Q  56 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatctattaatcaagt 145  Q
    ||||||| ||||||||| || |||||||||||||  ||  | | |||||  |||||||||||||||||||||||||||| ||| ||||||    
T  37121 catctcacttatatgttattcaaaatctactcttctatccactatagaattttaactcacacttgacacattaacatctcttattcaagt 37032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 157
Target Start/End: Complemental strand, 1449 - 1350
Alignment:
Q  56 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatctattaatcaagtgtgtgactat 155  Q
    ||||||| |||||| || || |||||||| |||| |||  ||||| |||  || |||||||||||||||||||  |||| |||||||| ||||||| |||    
T  1449 catctcacttatatattattcaaaatctattcttccattcaatgttgaacattcactcacacttgacacatta--atctcttaatcaaatgtgtgattat 1352  T

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Target: scaffold0284 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 7537 - 7668
Alignment:
Q  1 aatgagatggacatcacatctttacaaaaaacctgaaggcattagacatttggaccatctcatttatatgttgttgaaaatctactctttcatgtaatgt 100  Q
    |||||||| |||| |||| ||| |||  |||||| ||| ||||||  |||| |  ||||| | |||||||||| | ||||||||||||| |||  |||||    
T  7537 aatgagattgacaccacaacttcacatgaaaccttaagacattaggtattttggtcatctaacttatatgttgctcaaaatctactcttccatccaatgt 7636  T
Q  101 agaaggttaactcacacttgacacattaacat 132  Q
    | || |||||||| || |||||||||||||||    
T  7637 ataacgttaactcgcatttgacacattaacat 7668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 108 - 175
Target Start/End: Complemental strand, 18337 - 18270
Alignment:
Q  108 taactcacacttgacacattaacatctattaatcaagtgtgtgactatccacgtctgtaagtatgtga 175  Q
    ||||| ||||||||||||||||||| | |||||||||||||  ||||||||| | ||||| |||||||    
T  18337 taactaacacttgacacattaacatatcttaatcaagtgtgctactatccacatttgtaattatgtga 18270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 130
Target Start/End: Original strand, 32470 - 32544
Alignment:
Q  56 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaac 130  Q
    ||||||| |||||||||| | || || ||||||| ||| ||||||||||| |||| |||||| ||||||||||||    
T  32470 catctcacttatatgttgctcaatatatactcttacatataatgtagaagtttaaatcacacgtgacacattaac 32544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 311
Target Start/End: Original strand, 32783 - 32851
Alignment:
Q  243 agagtgtagggaataaagtgagttgatgatatttatatgagtttgttgaaggagttggagatttttggg 311  Q
    ||||| ||||||||||| ||| ||| || || || ||||| |||||||||||||||||| ||| |||||    
T  32783 agagtatagggaataaaatgatttgctggtaattttatgaatttgttgaaggagttggaaattattggg 32851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 43712 - 43666
Alignment:
Q  97 atgtagaaggttaactcacacttgacacattaacatctattaatcaa 143  Q
    |||||||| ||||||||||||||||||||||||||| | ||||||||    
T  43712 atgtagaacgttaactcacacttgacacattaacatattttaatcaa 43666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 130
Target Start/End: Complemental strand, 15343 - 15272
Alignment:
Q  59 ctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaac 130  Q
    |||| |||||||||| | || |||||||| | ||| ||||||| ||| |||| |||||||||||||||||||    
T  15343 ctcacttatatgttgctcaatatctactcatacatataatgtaaaagtttaaatcacacttgacacattaac 15272  T

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Target: scaffold0169 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 322
Target Start/End: Complemental strand, 3744 - 3686
Alignment:
Q  264 gttgatgatatttatatgagtttgttgaaggagttggagatttttgggtaataaattta 322  Q
    |||||||||| |||| | ||||||||||||||||||| |||||| || |||| ||||||    
T  3744 gttgatgataattattttagtttgttgaaggagttggggattttaggataattaattta 3686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 315
Target Start/End: Complemental strand, 41080 - 41046
Alignment:
Q  281 gagtttgttgaaggagttggagatttttgggtaat 315  Q
    ||||||||| |||||||||||||||||||||||||    
T  41080 gagtttgttaaaggagttggagatttttgggtaat 41046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 18458 - 18547
Alignment:
Q  56 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatctattaatcaagt 145  Q
    ||||||| ||||||||| || |||||||||||||  ||  | | |||||  ||||||||||||||||  |||||||||| ||| ||||||    
T  18458 catctcacttatatgttattcaaaatctactcttctatccactatagaattttaactcacacttgactaattaacatctcttattcaagt 18547  T

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Target: scaffold1345 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1345
Description:

Target: scaffold1345; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 1885 - 1845
Alignment:
Q  107 ttaactcacacttgacacattaacatctattaatcaagtgt 147  Q
    |||||||||||||||||||||||||||| | ||| ||||||    
T  1885 ttaactcacacttgacacattaacatctctcaattaagtgt 1845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 132
Target Start/End: Original strand, 29169 - 29245
Alignment:
Q  56 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacat 132  Q
    ||||||| |||||||||||| || ||||||| || |||  ||||| |||  |||||||||| |||| ||||||||||    
T  29169 catctcacttatatgttgtttaacatctacttttgcatccaatgtggaactttaactcacatttgatacattaacat 29245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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