View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8819_low_5 (Length: 372)

Name: NF8819_low_5
Description: NF8819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8819_low_5
NF8819_low_5
[»] chr8 (2 HSPs)
chr8 (63-350)||(32402194-32402480)
chr8 (1-68)||(16686189-16686256)
[»] chr6 (16 HSPs)
chr6 (1-68)||(4574451-4574518)
chr6 (1-68)||(4560649-4560716)
chr6 (1-68)||(4563854-4563921)
chr6 (1-68)||(4626094-4626161)
chr6 (9-68)||(4592382-4592441)
chr6 (1-67)||(4256535-4256601)
chr6 (3-68)||(4598316-4598381)
chr6 (1-65)||(4571115-4571179)
chr6 (1-68)||(4516464-4516531)
chr6 (1-68)||(4601932-4601999)
chr6 (1-67)||(4490278-4490344)
chr6 (1-58)||(4579575-4579632)
chr6 (3-67)||(3171886-3171950)
chr6 (1-65)||(4299671-4299735)
chr6 (12-68)||(4457748-4457804)
chr6 (20-68)||(4617184-4617232)
[»] chr7 (1 HSPs)
chr7 (1-65)||(3086563-3086627)
[»] scaffold0475 (1 HSPs)
scaffold0475 (9-68)||(3606-3665)
[»] chr3 (1 HSPs)
chr3 (16-68)||(1281272-1281324)


Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 63 - 350
Target Start/End: Complemental strand, 32402480 - 32402194
Alignment:
Q  63 cattcaataaaaaagtgaannnnnnnncttataacaaaagcaggagggagtagtatgtttcaaattattcatcactttttcctcatagaaaaattattta 162  Q
    |||||||||||||||||||        ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32402480 cattcaataaaaaagtgaattttttttcttataataaaaacaggagggagtagtatgtttcaaattattcatcactttttcctcatagaaaaattattta 32402381  T
Q  163 atcactttagaatatcgtgcgggagtattaannnnnnnnaagggattaattatttttcttgttagtcgcttaaataatttgcatctcaactatcctacat 262  Q
    |||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32402380 atcactttagaatatcgtgcgggagtattaattttttt-aagggattaattatttttcttgttagtagcttaaataatttgcatctcaactatcctacat 32402282  T
Q  263 taattagtcctcccacctaacttccacaacattaaggatatttcagtcaacaaaaatgattttaccttaaaattgtaactaatgtttt 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  32402281 taattagtcctcccacctaacttccacaacattaaggatatttcagtcaacaaaaatgattgtaccttataattgtaactaatgtttt 32402194  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 16686256 - 16686189
Alignment:
Q  1 cattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccattca 68  Q
    ||||||||| |||||||||||| || ||||| ||||| || || |||||| | |||||||||||||||    
T  16686256 cattgaccaatttctccacctcatctctcttcacattggtgtcaatttccatgccaatctcccattca 16686189  T

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Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 4574451 - 4574518
Alignment:
Q  1 cattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccattca 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4574451 cattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccattca 4574518  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 4560649 - 4560716
Alignment:
Q  1 cattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccattca 68  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||| |||||||    
T  4560649 cattgaccagtttctccacgtcctccctctttacatttgtatcaatttcgtttccaatcttccattca 4560716  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 4563854 - 4563921
Alignment:
Q  1 cattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccattca 68  Q
    ||||||| |||||||||||||| || ||||||||||| |||||||||||| | |||||||||||||||    
T  4563854 cattgacaagtttctccacctcttctctctttacattcgtatcgatttccatcccaatctcccattca 4563921  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 4626094 - 4626161
Alignment:
Q  1 cattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccattca 68  Q
    |||||| ||||||||| ||| |||||||||| ||||||| |||||||||| |||||||||||||||||    
T  4626094 cattgatcagtttctctaccccctccctcttcacattagcatcgatttccattccaatctcccattca 4626161  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 4592382 - 4592441
Alignment:
Q  9 agtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccattca 68  Q
    ||||||||||||||||| ||||||||||| ||||| |||||| | |||||||||||||||    
T  4592382 agtttctccacctcctctctctttacattcgtatcaatttccatcccaatctcccattca 4592441  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 4256601 - 4256535
Alignment:
Q  1 cattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccattc 67  Q
    |||||| ||| ||||||||||| || ||||| |||||||||| ||||||  ||||||||||||||||    
T  4256601 cattgatcagattctccacctcatctctcttcacattagtattgatttcaattccaatctcccattc 4256535  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 4598316 - 4598381
Alignment:
Q  3 ttgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccattca 68  Q
    |||||||| |||||||||||||| ||||| |||||||| || ||||   |||||||||||||||||    
T  4598316 ttgaccagcttctccacctcctctctcttcacattagtttcaattttgattccaatctcccattca 4598381  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 4571115 - 4571179
Alignment:
Q  1 cattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccat 65  Q
    |||||||||  ||||||||||| |  ||||| |||||||||||||||||  ||||||||||||||    
T  4571115 cattgaccaaattctccacctcatttctcttcacattagtatcgatttcgattccaatctcccat 4571179  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 4516464 - 4516531
Alignment:
Q  1 cattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccattca 68  Q
    |||||| ||| |||||||||||||| ||||| ||||| ||||| |||||   ||||||||||||||||    
T  4516464 cattgatcagcttctccacctcctctctcttcacattggtatcaatttctgctccaatctcccattca 4516531  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 4601932 - 4601999
Alignment:
Q  1 cattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccattca 68  Q
    |||||| ||| ||| ||| |||||| ||||| ||||| |||||||||||| | |||||||||||||||    
T  4601932 cattgatcagcttcgccaactcctctctcttcacatttgtatcgatttccataccaatctcccattca 4601999  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 4490344 - 4490278
Alignment:
Q  1 cattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccattc 67  Q
    |||||| ||||||||| ||||| || ||||||||||| ||||| |||| | | ||||||||||||||    
T  4490344 cattgatcagtttctctacctcttctctctttacattggtatcaattttcatcccaatctcccattc 4490278  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 4579575 - 4579632
Alignment:
Q  1 cattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaat 58  Q
    |||| ||||| |||||||||||||| ||||| |||||||| ||||||||  |||||||    
T  4579575 cattaaccagcttctccacctcctctctcttcacattagtgtcgatttcaattccaat 4579632  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 3171886 - 3171950
Alignment:
Q  3 ttgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccattc 67  Q
    |||| ||||||||| |||||| | ||||||||||| ||||| |||||| | ||||||| ||||||    
T  3171886 ttgatcagtttctctacctcccctctctttacattggtatcaatttccatcccaatcttccattc 3171950  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 4299735 - 4299671
Alignment:
Q  1 cattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccat 65  Q
    |||||| ||| || ||||||||||| ||| | ||||| |||||||||||  ||||||||||||||    
T  4299735 cattgatcagcttttccacctcctctctcctcacatttgtatcgatttcgattccaatctcccat 4299671  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 4457748 - 4457804
Alignment:
Q  12 ttctccacctcctccctctttacattagtatcgatttcctttccaatctcccattca 68  Q
    ||||||||||| || ||||| ||||| |||||||||||| | |||||||| ||||||    
T  4457748 ttctccacctcatctctcttcacatttgtatcgatttccatcccaatctctcattca 4457804  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 4617184 - 4617232
Alignment:
Q  20 ctcctccctctttacattagtatcgatttcctttccaatctcccattca 68  Q
    |||||| ||||| ||||| |||||||||||| | |||||||||||||||    
T  4617184 ctcctctctcttcacattcgtatcgatttccataccaatctcccattca 4617232  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 3086563 - 3086627
Alignment:
Q  1 cattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccat 65  Q
    |||||| ||| ||||| |||||||| ||||| |||||||||||||||||  ||||||||||||||    
T  3086563 cattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccat 3086627  T

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Target: scaffold0475 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 3665 - 3606
Alignment:
Q  9 agtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccattca 68  Q
    ||||||||||||||||| ||||| ||||| | ||| |||||  |||||||||||||||||    
T  3665 agtttctccacctcctctctcttcacattggaatctatttcacttccaatctcccattca 3606  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 1281272 - 1281324
Alignment:
Q  16 ccacctcctccctctttacattagtatcgatttcctttccaatctcccattca 68  Q
    |||||||||| ||||| ||||| |||||||||||| | ||||||| |||||||    
T  1281272 ccacctcctctctcttcacatttgtatcgatttccataccaatcttccattca 1281324  T

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