View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8820_high_12 (Length: 328)

Name: NF8820_high_12
Description: NF8820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8820_high_12
NF8820_high_12
[»] chr7 (28 HSPs)
chr7 (19-311)||(47729896-47730195)
chr7 (39-129)||(9230592-9230682)
chr7 (39-129)||(25491526-25491616)
chr7 (43-161)||(9557885-9558005)
chr7 (39-129)||(13715078-13715169)
chr7 (41-113)||(11019617-11019689)
chr7 (66-159)||(25024742-25024837)
chr7 (39-129)||(26782203-26782296)
chr7 (41-95)||(10224086-10224140)
chr7 (39-129)||(40702990-40703080)
chr7 (39-127)||(18375597-18375683)
chr7 (46-105)||(14088948-14089007)
chr7 (46-105)||(14398966-14399025)
chr7 (39-114)||(34468375-34468450)
chr7 (51-113)||(19400185-19400249)
chr7 (39-105)||(27387220-27387288)
chr7 (51-116)||(26493616-26493683)
chr7 (39-113)||(45197836-45197908)
chr7 (72-159)||(3113090-3113179)
chr7 (70-116)||(8395287-8395333)
chr7 (70-116)||(36631938-36631984)
chr7 (51-95)||(38575214-38575258)
chr7 (73-116)||(14775593-14775636)
chr7 (73-116)||(15226046-15226089)
chr7 (39-127)||(23179780-23179866)
chr7 (39-79)||(8866807-8866847)
chr7 (39-79)||(26625795-26625835)
chr7 (39-79)||(38637458-38637498)
[»] chr8 (20 HSPs)
chr8 (39-159)||(40145870-40145992)
chr8 (39-136)||(28846798-28846895)
chr8 (43-128)||(42447121-42447206)
chr8 (44-129)||(24592229-24592314)
chr8 (41-129)||(13152286-13152374)
chr8 (51-127)||(10467956-10468032)
chr8 (39-129)||(40469893-40469983)
chr8 (39-127)||(9256582-9256670)
chr8 (39-113)||(24333910-24333984)
chr8 (39-113)||(21958705-21958781)
chr8 (39-113)||(3436285-3436360)
chr8 (39-129)||(14447020-14447110)
chr8 (39-100)||(2826227-2826288)
chr8 (69-115)||(15839397-15839443)
chr8 (49-113)||(27190974-27191038)
chr8 (73-116)||(24019401-24019444)
chr8 (73-116)||(28524312-28524355)
chr8 (73-116)||(29727391-29727434)
chr8 (73-116)||(39915628-39915671)
chr8 (58-98)||(34228174-34228214)
[»] chr1 (25 HSPs)
chr1 (39-136)||(30558890-30558987)
chr1 (41-159)||(9637319-9637439)
chr1 (41-128)||(25017581-25017668)
chr1 (39-128)||(30055014-30055103)
chr1 (42-127)||(32379751-32379836)
chr1 (39-128)||(40864611-40864701)
chr1 (39-129)||(48606504-48606594)
chr1 (39-128)||(52753708-52753802)
chr1 (39-129)||(26272821-26272911)
chr1 (39-159)||(15209284-15209404)
chr1 (39-129)||(22892015-22892105)
chr1 (68-116)||(32981050-32981098)
chr1 (51-116)||(35948882-35948949)
chr1 (66-113)||(33490457-33490504)
chr1 (39-113)||(41971297-41971371)
chr1 (39-127)||(14499090-14499179)
chr1 (51-113)||(41753157-41753221)
chr1 (66-160)||(42309898-42309994)
chr1 (72-116)||(7434531-7434575)
chr1 (52-113)||(32885875-32885938)
chr1 (62-105)||(170368-170413)
chr1 (68-113)||(320717-320762)
chr1 (51-95)||(11843823-11843867)
chr1 (39-91)||(17874971-17875023)
chr1 (77-129)||(49465402-49465454)
[»] chr4 (30 HSPs)
chr4 (39-127)||(21753523-21753611)
chr4 (49-132)||(17359335-17359418)
chr4 (39-129)||(4325604-4325694)
chr4 (39-129)||(31002619-31002709)
chr4 (39-113)||(53692942-53693016)
chr4 (39-127)||(3074562-3074650)
chr4 (51-159)||(24104464-24104574)
chr4 (39-122)||(31944809-31944891)
chr4 (39-113)||(12211134-12211208)
chr4 (41-132)||(1147694-1147785)
chr4 (39-95)||(42843903-42843959)
chr4 (39-105)||(48131062-48131128)
chr4 (69-116)||(6236579-6236626)
chr4 (39-111)||(55464568-55464642)
chr4 (70-116)||(25931865-25931911)
chr4 (69-115)||(36381349-36381395)
chr4 (70-116)||(40530197-40530243)
chr4 (39-83)||(8897864-8897908)
chr4 (69-116)||(13398566-13398613)
chr4 (73-116)||(20130356-20130399)
chr4 (73-116)||(26438286-26438329)
chr4 (39-98)||(30111012-30111071)
chr4 (73-116)||(34406291-34406334)
chr4 (73-116)||(43357022-43357065)
chr4 (73-116)||(47501890-47501933)
chr4 (75-116)||(17510255-17510296)
chr4 (75-116)||(29319367-29319408)
chr4 (39-79)||(7769607-7769647)
chr4 (39-91)||(10632544-10632596)
chr4 (39-79)||(30215822-30215862)
[»] chr6 (11 HSPs)
chr6 (39-158)||(25599348-25599469)
chr6 (39-127)||(32441868-32441956)
chr6 (39-136)||(30621357-30621455)
chr6 (39-136)||(11971152-11971249)
chr6 (39-132)||(25340631-25340726)
chr6 (39-104)||(31028005-31028070)
chr6 (41-111)||(12180430-12180500)
chr6 (47-113)||(1296709-1296777)
chr6 (51-116)||(24074617-24074684)
chr6 (72-116)||(34947839-34947883)
chr6 (69-127)||(12648930-12648988)
[»] chr3 (20 HSPs)
chr3 (41-159)||(15668140-15668258)
chr3 (39-127)||(24988707-24988795)
chr3 (39-136)||(42269123-42269220)
chr3 (39-139)||(9743461-9743561)
chr3 (39-127)||(51262172-51262259)
chr3 (39-129)||(37381760-37381851)
chr3 (41-128)||(43137321-43137408)
chr3 (39-127)||(3856761-3856849)
chr3 (37-159)||(1185502-1185627)
chr3 (64-126)||(17073887-17073949)
chr3 (39-101)||(50091460-50091522)
chr3 (39-105)||(31989222-31989290)
chr3 (73-116)||(40080755-40080798)
chr3 (73-116)||(39772906-39772949)
chr3 (39-113)||(51408515-51408591)
chr3 (39-105)||(53710591-53710659)
chr3 (86-126)||(42964793-42964833)
chr3 (89-127)||(24130397-24130435)
chr3 (66-116)||(34083121-34083171)
chr3 (41-113)||(5136346-5136417)
[»] chr5 (17 HSPs)
chr5 (39-127)||(1280774-1280862)
chr5 (39-129)||(27168695-27168785)
chr5 (39-128)||(3055675-3055764)
chr5 (39-128)||(22712793-22712881)
chr5 (39-101)||(23244490-23244552)
chr5 (39-113)||(28801926-28802000)
chr5 (39-129)||(15730865-15730957)
chr5 (41-159)||(8785977-8786094)
chr5 (51-116)||(204055-204122)
chr5 (69-116)||(13819086-13819133)
chr5 (69-116)||(16156017-16156064)
chr5 (70-116)||(1775377-1775423)
chr5 (64-113)||(192847-192896)
chr5 (89-128)||(12098052-12098091)
chr5 (73-116)||(26282327-26282370)
chr5 (73-116)||(36292619-36292662)
chr5 (69-114)||(39656531-39656576)
[»] chr2 (22 HSPs)
chr2 (39-127)||(12539766-12539854)
chr2 (39-127)||(31392989-31393076)
chr2 (39-129)||(33453080-33453170)
chr2 (39-128)||(19951725-19951814)
chr2 (41-129)||(45261737-45261825)
chr2 (39-113)||(26238666-26238740)
chr2 (66-116)||(4554341-4554391)
chr2 (46-113)||(7071571-7071638)
chr2 (49-113)||(18425862-18425928)
chr2 (39-114)||(32126229-32126304)
chr2 (73-159)||(17443988-17444076)
chr2 (39-95)||(1955022-1955078)
chr2 (39-91)||(26656271-26656323)
chr2 (73-116)||(6402814-6402857)
chr2 (85-128)||(27925638-27925681)
chr2 (69-136)||(30547148-30547215)
chr2 (69-116)||(42443095-42443142)
chr2 (72-114)||(31580735-31580777)
chr2 (39-97)||(40607999-40608057)
chr2 (72-116)||(17035758-17035802)
chr2 (72-116)||(17090269-17090313)
chr2 (76-116)||(41250634-41250674)
[»] scaffold0726 (1 HSPs)
scaffold0726 (39-127)||(1076-1164)
[»] scaffold0198 (1 HSPs)
scaffold0198 (39-129)||(1589-1679)
[»] scaffold0002 (1 HSPs)
scaffold0002 (46-113)||(435257-435324)
[»] scaffold0015 (1 HSPs)
scaffold0015 (39-113)||(214067-214143)
[»] scaffold0178 (1 HSPs)
scaffold0178 (39-129)||(17931-18023)
[»] scaffold0154 (1 HSPs)
scaffold0154 (41-102)||(32268-32329)
[»] scaffold0170 (1 HSPs)
scaffold0170 (39-105)||(9269-9337)
[»] scaffold0019 (1 HSPs)
scaffold0019 (51-113)||(134760-134824)
[»] scaffold0069 (1 HSPs)
scaffold0069 (73-116)||(18684-18727)


Alignment Details
Target: chr7 (Bit Score: 161; Significance: 8e-86; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 47729896 - 47730195
Alignment:
Q  19 ttttcatagctaaatccatcacttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggt 118  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47729896 ttttcatagctaaatccgtcgcttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggt 47729995  T
Q  119 caaaattttgcacaaa--ctataaattttttggctccgccactaccgatgtccaattcnnnnnnncagcgttccttatcatattcttatttttcagtatc 216  Q
    ||||||||||||||||  ||||||| ||| |||||||| ||||||| |||||| ||||       ||||||||||||||||||||||| |||| ||||||    
T  47729996 caaaattttgcacaaactctataaaatttatggctccgtcactaccaatgtcctattctttttttcagcgttccttatcatattcttaatttttagtatc 47730095  T
Q  217 tttat-----nnnnnnnnnnnnnnnnncctatatatataacaaaggtaatgtatatctgcatgattttgaatacaaatgaataagaaaatagatagatta 311  Q
    |||||                      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47730096 tttataaaaataaaaaaaaataaaaaacctatatatataacaaaggtaatgtatatctgcatgattttgaatacaaatgaataagaaaatagatagatta 47730195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 39 - 129
Target Start/End: Original strand, 9230592 - 9230682
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgc 129  Q
    |||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||| |  ||||||||||||    
T  9230592 acttttatcgacaaaatgacgagcctcttttattttgatttatgactatttatatattatgtcacatgtgaatttgcaatcaaaattttgc 9230682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 129
Target Start/End: Complemental strand, 25491616 - 25491526
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgc 129  Q
    |||||| |||||||||||||||| || ||||||||| |||||||| ||||||||||||||||||||| | ||||| |||| ||||||||||    
T  25491616 acttttgttgacaaaatgacgagtctattttatttcaatttatgactatttatatattatgtcacatgtaaatttgcggttaaaattttgc 25491526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 43 - 161
Target Start/End: Original strand, 9557885 - 9558005
Alignment:
Q  43 ttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgcacaaact--ataa 140  Q
    |||| ||||||||||||| ||| |||||||| |||||||||  |||||||||||||||||||| | ||||| ||||||||||||||| || |||  ||||    
T  9557885 ttatcgacaaaatgacgaaccttttttattttgatttatgacaatttatatattatgtcacatgtaaatttgcggtcaaaattttgctcagactcgataa 9557984  T
Q  141 attttttggctccgccactac 161  Q
    | ||| || ||||||||||||    
T  9557985 aatttctgactccgccactac 9558005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 39 - 129
Target Start/End: Complemental strand, 13715169 - 13715078
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatatta-tgtcacatttgaatttacggtcaaaattttgc 129  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||| ||||| || |||||||  ||| ||||||||||    
T  13715169 acttttattgacaaaatgacgagcctcttttatttcaatttatgactattcatatattattgtcatatatgaatttgtggttaaaattttgc 13715078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 11019689 - 11019617
Alignment:
Q  41 ttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaattt 113  Q
    |||| |||||||||||| || |||||||||||| ||||||||| | ||||||||||||||||||| |||||||    
T  11019689 ttttgttgacaaaatgaggaacctcttttattttgatttatgactgtttatatattatgtcacatgtgaattt 11019617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 159
Target Start/End: Original strand, 25024742 - 25024837
Alignment:
Q  66 ttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgcacaaa--ctataaattttttggctccgccact 159  Q
    |||||||| |||||||||||||||||||||||||||| || ||||||| |||| |||||||||| || |  ||||||| ||  |||||||||||||    
T  25024742 ttttattttgatttatgattatttatatattatgtcatatgtgaatttgcggttaaaattttgctcagactctataaaattcctggctccgccact 25024837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 39 - 129
Target Start/End: Complemental strand, 26782296 - 26782203
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatg---attatttatatattatgtcacatttgaatttacggtcaaaattttgc 129  Q
    |||||||| ||||||||||||||||| |||||||| ||||||||   | ||||||||||||||||| ||| |||||||  | ||||||||||||    
T  26782296 acttttatcgacaaaatgacgagcctattttattttgatttatgactactatttatatattatgtcgcatgtgaatttgagatcaaaattttgc 26782203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 10224086 - 10224140
Alignment:
Q  41 ttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatat 95  Q
    ||||||||||||||||| || |||||||||||||||||||||| |||||||||||    
T  10224086 ttttattgacaaaatgaagaacctcttttatttcgatttatgactatttatatat 10224140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 129
Target Start/End: Original strand, 40702990 - 40703080
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgc 129  Q
    ||||||||  |||||||||| || || |||||||| ||||||||| |||||||||||| || ||||| |||||||  ||||||||||||||    
T  40702990 acttttatctacaaaatgacaagtctattttattttgatttatgactatttatatattgtggcacatgtgaatttgaggtcaaaattttgc 40703080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 127
Target Start/End: Original strand, 18375597 - 18375683
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaatttt 127  Q
    |||||||| || ||||||||||||| ||||  ||||||||||||| ||||||||||||||||||||| || |||| | |||||||||||    
T  18375597 acttttatggataaaatgacgagccactttc-tttcgatttatgactatttatatattatgtcacatgtg-atttgctgtcaaaatttt 18375683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 14088948 - 14089007
Alignment:
Q  46 ttgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacat 105  Q
    |||||||| |||||||||| |||||||| ||||||||| ||||| |||||||||||||||    
T  14088948 ttgacaaactgacgagcctattttattttgatttatgactatttgtatattatgtcacat 14089007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 14398966 - 14399025
Alignment:
Q  46 ttgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacat 105  Q
    |||||||| |||||||||| |||||||| ||||||||| ||||| |||||||||||||||    
T  14398966 ttgacaaactgacgagcctattttattttgatttatgactatttgtatattatgtcacat 14399025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 34468450 - 34468375
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaattta 114  Q
    |||||| ||||||||||||  | ||||||||||||| |||||||| | |||||||||||| |||||| ||||||||    
T  34468450 acttttgttgacaaaatgataaacctcttttatttcaatttatgactgtttatatattatatcacatgtgaattta 34468375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 113
Target Start/End: Original strand, 19400185 - 19400249
Alignment:
Q  51 aaaatgacgagcctcttttatttcgatttatgattatt--tatatattatgtcacatttgaattt 113  Q
    |||||||||| |||||||||||| ||||||||| ||||  ||||||||||||||||| |||||||    
T  19400185 aaaatgacgaacctcttttattttgatttatgactatttatatatattatgtcacatatgaattt 19400249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 27387288 - 27387220
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttat--atattatgtcacat 105  Q
    |||||| |||| |||||||||| |||||| ||||||||||||||| |||||||  ||||||||||||||    
T  27387288 acttttgttgaaaaaatgacgaacctcttctatttcgatttatgactatttatatatattatgtcacat 27387220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 26493683 - 26493616
Alignment:
Q  51 aaaatgacgagcctcttttatttcgatttatgattatttat--atattatgtcacatttgaatttacg 116  Q
    |||||||||| |||||||||||| ||| ||||| |||||||  |||||||||||||| ||||||||||    
T  26493683 aaaatgacgatcctcttttattttgatatatgactatttatatatattatgtcacatgtgaatttacg 26493616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 45197836 - 45197908
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaattt 113  Q
    |||||| |||| ||||||||||  |||||||||||||||||||||  |||  ||||||||||||||| |||||||    
T  45197836 acttttgttgaaaaaatgacgaatctcttttatttcgatttatgaccatt--tatattatgtcacatgtgaattt 45197908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 159
Target Start/End: Complemental strand, 3113179 - 3113090
Alignment:
Q  72 ttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgcacaaact--ataaattttttggctccgccact 159  Q
    |||||||||||||| |||||||||||| |||||| |||||||||| | ||  ||| || | ||||  ||||||||| |||||||||||||    
T  3113179 ttcgatttatgattgtttatatattatatcacatgtgaatttacgattaatttttcgcccgaactccataaattttctggctccgccact 3113090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 8395287 - 8395333
Alignment:
Q  70 atttcgatttatgattatttatatattatgtcacatttgaatttacg 116  Q
    |||||||||||||| | ||||||||||||||||||| ||||||||||    
T  8395287 atttcgatttatgactgtttatatattatgtcacatgtgaatttacg 8395333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 36631938 - 36631984
Alignment:
Q  70 atttcgatttatgattatttatatattatgtcacatttgaatttacg 116  Q
    |||||||||||||| | ||||||||||||||||||| ||||||||||    
T  36631938 atttcgatttatgactgtttatatattatgtcacatgtgaatttacg 36631984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 38575258 - 38575214
Alignment:
Q  51 aaaatgacgagcctcttttatttcgatttatgattatttatatat 95  Q
    ||||||| || |||||||||||||||||||||| |||||||||||    
T  38575258 aaaatgatgaacctcttttatttcgatttatgactatttatatat 38575214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 14775636 - 14775593
Alignment:
Q  73 tcgatttatgattatttatatattatgtcacatttgaatttacg 116  Q
    ||||||||||| |||||||||||||||||| || ||||||||||    
T  14775636 tcgatttatgactatttatatattatgtcatatgtgaatttacg 14775593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 15226089 - 15226046
Alignment:
Q  73 tcgatttatgattatttatatattatgtcacatttgaatttacg 116  Q
    ||||||||||| |||||||||||||||||| || ||||||||||    
T  15226089 tcgatttatgactatttatatattatgtcatatgtgaatttacg 15226046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 127
Target Start/End: Complemental strand, 23179866 - 23179780
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaatttt 127  Q
    |||||||| || ||||||||||| |||| ||| ||| |||||| | |||||||||||  ||||| || |||||||||  ||||||||||    
T  23179866 acttttatcgaaaaaatgacgagtctctcttacttcaatttataactatttatatat--tgtcatatgtgaatttacaatcaaaatttt 23179780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 8866847 - 8866807
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgattt 79  Q
    |||||||||||||||||||  | ||||||||||||||||||    
T  8866847 acttttattgacaaaatgataaacctcttttatttcgattt 8866807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 26625795 - 26625835
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgattt 79  Q
    |||||||||||||||||||  | ||||||||||||||||||    
T  26625795 acttttattgacaaaatgataaacctcttttatttcgattt 26625835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 38637498 - 38637458
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgattt 79  Q
    |||||||||||||||||||  | ||||||||||||||||||    
T  38637498 acttttattgacaaaatgataaacctcttttatttcgattt 38637458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 39 - 159
Target Start/End: Complemental strand, 40145992 - 40145870
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgcacaaa--ct 136  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||| ||||  ||    
T  40145992 acttttattgacaaaatgacgagcttcttctatttcgatttatgattatttatatattatgtcacatataaatttgcggtcaaaattttgcccaaaatct 40145893  T
Q  137 ataaattttttggctccgccact 159  Q
    ||||| ||| |||||||||||||    
T  40145892 ataaaatttatggctccgccact 40145870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 28846798 - 28846895
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgcacaaact 136  Q
    ||||||||||| ||||||||||  ||||||||||||||||||||| |||||||||||||| |||||| |||||||| ||| |||||||||||||||||    
T  28846798 acttttattgataaaatgacgaatctcttttatttcgatttatgactatttatatattatatcacatgtgaatttatggttaaaattttgcacaaact 28846895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 43 - 128
Target Start/End: Original strand, 42447121 - 42447206
Alignment:
Q  43 ttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttg 128  Q
    ||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||| ||||||| || |||||||||||    
T  42447121 ttattgacaaaatgacgagtctcttttatttcgatttatgactgtttatatattatgtcacatgtgaatttgcgatcaaaattttg 42447206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 129
Target Start/End: Complemental strand, 24592314 - 24592229
Alignment:
Q  44 tattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgc 129  Q
    |||||||||||||||||| ||||||||| ||||||||||| || |||||| ||||||||||| |||||||||||| ||||||||||    
T  24592314 tattgacaaaatgacgagtctcttttatctcgatttatgactaattatatgttatgtcacatgtgaatttacggttaaaattttgc 24592229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 41 - 129
Target Start/End: Complemental strand, 13152374 - 13152286
Alignment:
Q  41 ttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgc 129  Q
    |||||| ||||||||||| ||||| ||||||||| |||||||||||||||||||||||||| ||| ||||||| || ||||||||||||    
T  13152374 ttttatcgacaaaatgacaagcctattttatttcaatttatgattatttatatattatgtcgcatgtgaatttgcgatcaaaattttgc 13152286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 51 - 127
Target Start/End: Original strand, 10467956 - 10468032
Alignment:
Q  51 aaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaatttt 127  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| || ||| |||||||  ||| ||||||||    
T  10467956 aaaatgacgagcctcttttatttcgatttatgactatttatatattatttcgcatgtgaatttgtggttaaaatttt 10468032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 39 - 129
Target Start/End: Complemental strand, 40469983 - 40469893
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgc 129  Q
    |||||| |||||||||||| || |||||||||||||||||||||| | |||||||||||| || ||| |||||||||| | || |||||||    
T  40469983 acttttgttgacaaaatgaggaacctcttttatttcgatttatgactgtttatatattatatcgcatgtgaatttacgataaatattttgc 40469893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 127
Target Start/End: Original strand, 9256582 - 9256670
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaatttt 127  Q
    ||||||||  ||||||||||||||||||| |||||  |||||||| ||||||||||||||||| ||  ||||||| || ||||||||||    
T  9256582 acttttatcaacaaaatgacgagcctcttgtattttaatttatgactatttatatattatgtcgcacgtgaatttgcgatcaaaatttt 9256670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 24333910 - 24333984
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaattt 113  Q
    |||||| |||||||| ||| | |||| |||||||||||||||||| |||||||||||||| |||||| |||||||    
T  24333910 acttttgttgacaaattgatgtgcctattttatttcgatttatgactatttatatattatatcacatgtgaattt 24333984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 21958705 - 21958781
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatt--tatatattatgtcacatttgaattt 113  Q
    |||||| |||| ||||||| || |||||||||||||||||||||| ||||  ||||||||||||||||| |||||||    
T  21958705 acttttgttgaaaaaatgaagaacctcttttatttcgatttatgactatttatatatattatgtcacatatgaattt 21958781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 3436285 - 3436360
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttattt-cgatttatgattatttatatattatgtcacatttgaattt 113  Q
    |||||| |||||||||||| || ||| |||||||| |||||||||| | ||||||||||||||||||| |||||||    
T  3436285 acttttgttgacaaaatgaggaacctattttattttcgatttatgactgtttatatattatgtcacatgtgaattt 3436360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 39 - 129
Target Start/End: Original strand, 14447020 - 14447110
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgc 129  Q
    |||||||||||||||| ||||| | ||||||||||  |||||||| |||||||||||||| ||| |  |||||||| ||  ||||||||||    
T  14447020 acttttattgacaaaacgacgaacatcttttattttaatttatgactatttatatattatatcatacatgaatttatggataaaattttgc 14447110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 2826288 - 2826227
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgt 100  Q
    ||||||||||| |||||||| | ||| |||||||| ||||||||| ||||||||||||||||    
T  2826288 acttttattgataaaatgacaaacctattttattttgatttatgactatttatatattatgt 2826227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 115
Target Start/End: Original strand, 15839397 - 15839443
Alignment:
Q  69 tatttcgatttatgattatttatatattatgtcacatttgaatttac 115  Q
    |||||||||| |||| | |||||||||||||||||||||||||||||    
T  15839397 tatttcgattcatgactgtttatatattatgtcacatttgaatttac 15839443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 113
Target Start/End: Original strand, 27190974 - 27191038
Alignment:
Q  49 acaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaattt 113  Q
    ||||||| |||||| | ||||||||  |||||||| |||||||||||||||||| || |||||||    
T  27190974 acaaaataacgagcattttttattttaatttatgactatttatatattatgtcatatgtgaattt 27191038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 24019444 - 24019401
Alignment:
Q  73 tcgatttatgattatttatatattatgtcacatttgaatttacg 116  Q
    ||||||||||| |||||||||||||| |||||| ||||||||||    
T  24019444 tcgatttatgactatttatatattatatcacatgtgaatttacg 24019401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 28524312 - 28524355
Alignment:
Q  73 tcgatttatgattatttatatattatgtcacatttgaatttacg 116  Q
    ||||||||||| | ||||||||||||||||||| ||||||||||    
T  28524312 tcgatttatgactgtttatatattatgtcacatgtgaatttacg 28524355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 29727434 - 29727391
Alignment:
Q  73 tcgatttatgattatttatatattatgtcacatttgaatttacg 116  Q
    ||||||||||| | ||||||||||||||||||| ||||||||||    
T  29727434 tcgatttatgactgtttatatattatgtcacatgtgaatttacg 29727391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 39915628 - 39915671
Alignment:
Q  73 tcgatttatgattatttatatattatgtcacatttgaatttacg 116  Q
    ||||||||||| |||||||||||||| |||||| ||||||||||    
T  39915628 tcgatttatgactatttatatattatatcacatgtgaatttacg 39915671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 34228214 - 34228174
Alignment:
Q  58 cgagcctcttttatttcgatttatgattatttatatattat 98  Q
    ||||||||||||||||||| |||| | ||||||||||||||    
T  34228214 cgagcctcttttatttcgacttataactatttatatattat 34228174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 30558987 - 30558890
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgcacaaact 136  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||| |||||||| |||| ||||||    
T  30558987 acttttattgacaaaatgatgagcctcttttattttgatttatgactatttatatattatgtcacatgtgaatttacagtcaaaatcttgcgcaaact 30558890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 41 - 159
Target Start/End: Original strand, 9637319 - 9637439
Alignment:
Q  41 ttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgcacaaact--at 138  Q
    |||||| |||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| || |||  ||    
T  9637319 ttttatcgacaaaataacgagtctcttttatttcgatttattattatttatatattatgtcacatatgaatttagggtcaaaattttgcgcagactcgat 9637418  T
Q  139 aaattttttggctccgccact 159  Q
     || ||||||||| |||||||    
T  9637419 gaaatttttggctacgccact 9637439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 41 - 128
Target Start/End: Original strand, 25017581 - 25017668
Alignment:
Q  41 ttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttg 128  Q
    |||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| | ||||| ||||||||||||||    
T  25017581 ttttatcgacaaaatgacaagcctcttttatttcgatttatgactatttatatattatgtcacatgtaaatttgcggtcaaaattttg 25017668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 30055014 - 30055103
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttg 128  Q
    |||||||||||||||||  |||| ||||||||||| ||||||||| |||||||||||||||||| || ||||||| ||||||||||||||    
T  30055014 acttttattgacaaaattgcgagtctcttttattttgatttatgactatttatatattatgtcatatgtgaatttgcggtcaaaattttg 30055103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 127
Target Start/End: Complemental strand, 32379836 - 32379751
Alignment:
Q  42 tttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaatttt 127  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||| ||||||| || ||||| ||||    
T  32379836 tttattgacaaaatgacgagtctcttttatttcgatttatgattatttatataacatgtcacatgtgaatttgcgttcaaattttt 32379751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 40864701 - 40864611
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgattt-atgattatttatatattatgtcacatttgaatttacggtcaaaattttg 128  Q
    |||||||| |||||||||||||| | ||||||||||||||| |||| ||||||||||||||||||||| | ||||| ||||||||||||||    
T  40864701 acttttatcgacaaaatgacgagtcacttttatttcgattttatgactatttatatattatgtcacatgtaaatttgcggtcaaaattttg 40864611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 129
Target Start/End: Complemental strand, 48606594 - 48606504
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgc 129  Q
    |||||||| || |||||||||||  ||||||||||| |||||||| |||||||||||||||| |||| ||||||| |||||||||||||||    
T  48606594 acttttatcgaaaaaatgacgagtttcttttatttcaatttatgactatttatatattatgttacatgtgaatttgcggtcaaaattttgc 48606504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 52753802 - 52753708
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttt-----tatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttg 128  Q
    ||||||||  ||||||||||||||||||||     ||||||||||||||| ||||||||||||||||| ||| |||||||||| |||||||||||    
T  52753802 acttttatcaacaaaatgacgagcctctttaattttatttcgatttatgactatttatatattatgtcgcatgtgaatttacgatcaaaattttg 52753708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 39 - 129
Target Start/End: Complemental strand, 26272911 - 26272821
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgc 129  Q
    |||||| ||||||||| ||||| ||| |||||||||||||||||| ||||||||||| ||||||||| | ||||| |||| |||| |||||    
T  26272911 acttttgttgacaaaaagacgaaccttttttatttcgatttatgactatttatatatcatgtcacatgtaaatttgcggttaaaaatttgc 26272821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 159
Target Start/End: Complemental strand, 15209404 - 15209284
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgcacaaact-- 136  Q
    |||||| |||||||||||| || ||||||||||||||||||||||   ||||||||||||||||||| ||||||| || | ||| |||||| |   ||      
T  15209404 acttttgttgacaaaatgatgaacctcttttatttcgatttatga--ctttatatattatgtcacatgtgaatttgcgttaaaatttttgctcgggctcc 15209307  T
Q  137 ataaattttttggctccgccact 159  Q
    |||||||| ||||||||||||||    
T  15209306 ataaatttcttggctccgccact 15209284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 129
Target Start/End: Original strand, 22892015 - 22892105
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgc 129  Q
    |||||||| |||||||| |||||||| || ||||| ||||||||  |||||||||||| || ||||| |||||||  ||||||||||||||    
T  22892015 acttttatcgacaaaataacgagcctattatattttgatttatgtctatttatatattgtggcacatgtgaatttgaggtcaaaattttgc 22892105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 32981098 - 32981050
Alignment:
Q  68 ttatttcgatttatgattatttatatattatgtcacatttgaatttacg 116  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  32981098 ttatttcgatttatgactatttatatattatgtcacatgtgaatttacg 32981050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 35948949 - 35948882
Alignment:
Q  51 aaaatgacgagcctcttttatttcgatttatgattat--ttatatattatgtcacatttgaatttacg 116  Q
    |||||||||| |||||||||||| ||||||||| |||  |||||||||||||||||| ||||||||||    
T  35948949 aaaatgacgatcctcttttattttgatttatgactattattatatattatgtcacatgtgaatttacg 35948882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 113
Target Start/End: Original strand, 33490457 - 33490504
Alignment:
Q  66 ttttatttcgatttatgattatttatatattatgtcacatttgaattt 113  Q
    |||||||||||||||||| ||||||||||||||||| ||| |||||||    
T  33490457 ttttatttcgatttatgactatttatatattatgtcgcatgtgaattt 33490504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 41971371 - 41971297
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaattt 113  Q
    |||||| ||| ||||| || || |||||||||||| || |||||| | ||||||||||||||||||| |||||||    
T  41971371 acttttgttgtcaaaacgaggaacctcttttattttgagttatgactgtttatatattatgtcacatgtgaattt 41971297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 127
Target Start/End: Original strand, 14499090 - 14499179
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattattt-atatattatgtcacatttgaatttacggtcaaaatttt 127  Q
    |||||||| || ||||||| |||||||||||||| | ||||| || ||||| |||||||||||| ||| ||||||| || ||||| ||||    
T  14499090 acttttatcgataaaatgatgagcctcttttattacaatttaagactatttaatatattatgtcgcatgtgaatttgcgatcaaattttt 14499179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 113
Target Start/End: Original strand, 41753157 - 41753221
Alignment:
Q  51 aaaatgacgagcctcttttatttcgatttatgattatt--tatatattatgtcacatttgaattt 113  Q
    ||||||| || |||||||||||||||||| ||| ||||  ||||||||||||||||| |||||||    
T  41753157 aaaatgatgaacctcttttatttcgatttctgactatttatatatattatgtcacatatgaattt 41753221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 160
Target Start/End: Complemental strand, 42309994 - 42309898
Alignment:
Q  66 ttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgcacaaact--ataaattttttggctccgccacta 160  Q
    |||| |||| |||||||| | ||||||||||||||||||| |||||||||| | ||  |||||| ||| ||  ||||||||  ||||||||||||||    
T  42309994 ttttctttcaatttatgactgtttatatattatgtcacatgtgaatttacgattaattttttgcccaagctccataaatttcctggctccgccacta 42309898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 7434531 - 7434575
Alignment:
Q  72 ttcgatttatgattatttatatattatgtcacatttgaatttacg 116  Q
    |||||||||||||| |||||||||||| |||||| ||||||||||    
T  7434531 ttcgatttatgattgtttatatattatatcacatgtgaatttacg 7434575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 32885938 - 32885875
Alignment:
Q  52 aaatgacgagcctcttttatttcgatttatgattatttat--atattatgtcacatttgaattt 113  Q
    ||||||| | ||||||||| || |||||||||||||||||  |||||||||||||| |||||||    
T  32885938 aaatgacaatcctcttttaatttgatttatgattatttatatatattatgtcacatgtgaattt 32885875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 105
Target Start/End: Complemental strand, 170413 - 170368
Alignment:
Q  62 cctcttttatttcgatttatgattatttat--atattatgtcacat 105  Q
    |||||||||||||||||||||| |||||||  ||||||||||||||    
T  170413 cctcttttatttcgatttatgactatttatatatattatgtcacat 170368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 320762 - 320717
Alignment:
Q  68 ttatttcgatttatgattatttatatattatgtcacatttgaattt 113  Q
    |||||||||||||||| |  |||||||||||||||||| |||||||    
T  320762 ttatttcgatttatgactgattatatattatgtcacatgtgaattt 320717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 11843867 - 11843823
Alignment:
Q  51 aaaatgacgagcctcttttatttcgatttatgattatttatatat 95  Q
    |||||||||| ||| ||||||||| |||||||| |||||||||||    
T  11843867 aaaatgacgaaccttttttatttcaatttatgactatttatatat 11843823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 17874971 - 17875023
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttat 91  Q
    |||||| |||| |||||||||| | |||| ||||||||||||||| |||||||    
T  17874971 acttttgttgataaaatgacgaacttcttctatttcgatttatgactatttat 17875023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 49465454 - 49465402
Alignment:
Q  77 tttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgc 129  Q
    ||||||| ||||||||||||||||| ||| ||||||| |||| |||| |||||    
T  49465454 tttatgactatttatatattatgtcgcatgtgaatttgcggttaaaactttgc 49465402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 39 - 127
Target Start/End: Complemental strand, 21753611 - 21753523
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaatttt 127  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| || ||||||||| |||||||||||    
T  21753611 acttttattgacaaaatgacgagcctattttatttcgatttataattatttatatattatgtcatatgtgaatttacagtcaaaatttt 21753523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 49 - 132
Target Start/End: Original strand, 17359335 - 17359418
Alignment:
Q  49 acaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgcaca 132  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||    
T  17359335 acaaaatgacgtgcctcttttatttcgatttatgattatttatatattatgtcacatgtgaatttgcagtcaaaattttgcaca 17359418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 39 - 129
Target Start/End: Original strand, 4325604 - 4325694
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgc 129  Q
    |||||||| ||||||||||||||||||||||||||  |||||||| |||||||||||||| |||||| | ||||| |||||||||||||||    
T  4325604 acttttatcgacaaaatgacgagcctcttttatttaaatttatgactatttatatattatatcacatgtaaatttgcggtcaaaattttgc 4325694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 39 - 129
Target Start/End: Complemental strand, 31002709 - 31002619
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgc 129  Q
    ||||||||||||||||||| ||  ||||| ||||| ||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||    
T  31002709 acttttattgacaaaatgatgaatctcttgtattttgatttatgactatttatatattatgtcacatgtgaatttgcggtcaaaattttgc 31002619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 53693016 - 53692942
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaattt 113  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||    
T  53693016 acttttatcgacaaaatgacgagcctcttttatttcgatttatgactatttatatattatgtcgcatgtgaattt 53692942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 127
Target Start/End: Original strand, 3074562 - 3074650
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaatttt 127  Q
    |||||||| ||||||||||| || ||| ||||||||||||||||| |||||||||||||||||  || ||||||||| |||||||||||    
T  3074562 acttttatcgacaaaatgacaagtctcatttatttcgatttatgactatttatatattatgtcgtatgtgaatttacagtcaaaatttt 3074650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 51 - 159
Target Start/End: Complemental strand, 24104574 - 24104464
Alignment:
Q  51 aaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgcacaaact--ataaattttttg 148  Q
    ||||||||||||||||||||||||| | ||||| | ||||||||||||||||||| ||||| | ||||||||||||| | ||| ||  ||||| ||| ||    
T  24104574 aaaatgacgagcctcttttatttcgttctatgactgtttatatattatgtcacatgtgaatatgcggtcaaaattttacccaagctcgataaaatttatg 24104475  T
Q  149 gctccgccact 159  Q
    |||||||||||    
T  24104474 gctccgccact 24104464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 31944809 - 31944891
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaa 122  Q
    |||||||| |||||||||||||| |||||||||||| |||| ||||||||||||||||||||| ||| || |||||||||||||    
T  31944809 acttttatcgacaaaatgacgagtctcttttatttcaatttttgattatttatatattatgtcgcatgtg-atttacggtcaaa 31944891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 12211208 - 12211134
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaattt 113  Q
    |||||| |||| ||||||||||  || |||||||||||||||||||||||||||||||||||||||| |||||||    
T  12211208 acttttgttgataaaatgacgaatcttttttatttcgatttatgattatttatatattatgtcacatgtgaattt 12211134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 41 - 132
Target Start/End: Original strand, 1147694 - 1147785
Alignment:
Q  41 ttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgcaca 132  Q
    |||||| ||||||||| |||||||||||||||| ||||||| | ||||||||||||||||  ||| |||||||  | ||||||||| |||||    
T  1147694 ttttatcgacaaaatgccgagcctcttttattttgatttataactatttatatattatgtagcatgtgaatttgtgatcaaaatttagcaca 1147785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 42843903 - 42843959
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatat 95  Q
    |||||| |||| |||||||||| |||||||||||||||||||||| |||||||||||    
T  42843903 acttttgttgaaaaaatgacgaacctcttttatttcgatttatgactatttatatat 42843959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 48131062 - 48131128
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacat 105  Q
    |||||| ||||||||| || || ||| |||||||||||||||||| | |||||||||||||||||||    
T  48131062 acttttgttgacaaaaggaggaaccttttttatttcgatttatgaatgtttatatattatgtcacat 48131128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 116
Target Start/End: Original strand, 6236579 - 6236626
Alignment:
Q  69 tatttcgatttatgattatttatatattatgtcacatttgaatttacg 116  Q
    ||||||||||||||| | ||||||||||||||||||| ||||||||||    
T  6236579 tatttcgatttatgactgtttatatattatgtcacatatgaatttacg 6236626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 55464642 - 55464568
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatt--tatatattatgtcacatttgaat 111  Q
    |||||| |||| |||||||||| ||||||||||||||||||| ||  |||  ||||||||||||||||| |||||    
T  55464642 acttttgttgaaaaaatgacgaacctcttttatttcgatttacgacaatttatatatattatgtcacatatgaat 55464568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 25931865 - 25931911
Alignment:
Q  70 atttcgatttatgattatttatatattatgtcacatttgaatttacg 116  Q
    |||||||||||||| | ||||||||||||||||||| ||||||||||    
T  25931865 atttcgatttatgactgtttatatattatgtcacatgtgaatttacg 25931911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 36381395 - 36381349
Alignment:
Q  69 tatttcgatttatgattatttatatattatgtcacatttgaatttac 115  Q
    ||||||||||||||| | ||||||||||||||||||| |||||||||    
T  36381395 tatttcgatttatgactgtttatatattatgtcacatgtgaatttac 36381349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 40530197 - 40530243
Alignment:
Q  70 atttcgatttatgattatttatatattatgtcacatttgaatttacg 116  Q
    |||||||||||||| | ||||||||||||||||||| ||||||||||    
T  40530197 atttcgatttatgactgtttatatattatgtcacatgtgaatttacg 40530243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 8897908 - 8897864
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatga 83  Q
    |||||| ||||||||||||||| |||||||||||| |||||||||    
T  8897908 acttttgttgacaaaatgacgaacctcttttattttgatttatga 8897864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 69 - 116
Target Start/End: Complemental strand, 13398613 - 13398566
Alignment:
Q  69 tatttcgatttatgattatttatatattatgtcacatttgaatttacg 116  Q
    ||||||||||||||| | || |||||||||||||||| ||||||||||    
T  13398613 tatttcgatttatgactgttgatatattatgtcacatgtgaatttacg 13398566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 20130356 - 20130399
Alignment:
Q  73 tcgatttatgattatttatatattatgtcacatttgaatttacg 116  Q
    ||||||||||| | ||||||||||||||||||| ||||||||||    
T  20130356 tcgatttatgactgtttatatattatgtcacatgtgaatttacg 20130399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 26438329 - 26438286
Alignment:
Q  73 tcgatttatgattatttatatattatgtcacatttgaatttacg 116  Q
    ||||||||||| | ||||||||||||||||||| ||||||||||    
T  26438329 tcgatttatgactgtttatatattatgtcacatgtgaatttacg 26438286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 30111012 - 30111071
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattat 98  Q
    |||||| |||||||||| | || ||| |||||||| ||||||||| ||||||||||||||    
T  30111012 acttttgttgacaaaataaagaacctattttattttgatttatgactatttatatattat 30111071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 34406334 - 34406291
Alignment:
Q  73 tcgatttatgattatttatatattatgtcacatttgaatttacg 116  Q
    ||||||||||| | ||||||||||||||||||| ||||||||||    
T  34406334 tcgatttatgactgtttatatattatgtcacatgtgaatttacg 34406291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 43357022 - 43357065
Alignment:
Q  73 tcgatttatgattatttatatattatgtcacatttgaatttacg 116  Q
    ||||||||||| | ||||||||||||||||||| ||||||||||    
T  43357022 tcgatttatgactgtttatatattatgtcacatgtgaatttacg 43357065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 47501890 - 47501933
Alignment:
Q  73 tcgatttatgattatttatatattatgtcacatttgaatttacg 116  Q
    ||||||||||||| |||||||||||| |||||| ||||||||||    
T  47501890 tcgatttatgattgtttatatattatatcacatgtgaatttacg 47501933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 17510296 - 17510255
Alignment:
Q  75 gatttatgattatttatatattatgtcacatttgaatttacg 116  Q
    ||||||||| | ||||||||||||||||||| ||||||||||    
T  17510296 gatttatgactgtttatatattatgtcacatgtgaatttacg 17510255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 29319408 - 29319367
Alignment:
Q  75 gatttatgattatttatatattatgtcacatttgaatttacg 116  Q
    ||||||||||| |||||||||||| |||||| ||||||||||    
T  29319408 gatttatgattgtttatatattatatcacatgtgaatttacg 29319367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 7769607 - 7769647
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgattt 79  Q
    |||||||||||||||||||  | ||||||||||||||||||    
T  7769607 acttttattgacaaaatgataaacctcttttatttcgattt 7769647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 10632596 - 10632544
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttat 91  Q
    |||||| |||||||||||||   |||||||||||| ||||||||||| |||||    
T  10632596 acttttgttgacaaaatgacatacctcttttattttgatttatgattgtttat 10632544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 30215862 - 30215822
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgattt 79  Q
    |||||||||||||||||||  | ||||||||||||||||||    
T  30215862 acttttattgacaaaatgataaacctcttttatttcgattt 30215822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 9e-30; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 39 - 158
Target Start/End: Original strand, 25599348 - 25599469
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgcacaaact-- 136  Q
    |||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||| ||||| ||| ||||||| ||||||||||||||| ||  ||      
T  25599348 acttttatcgacaaaatgacgagcctattttatttcgatttatgactatttatatatcatgtcgcatgtgaatttgcggtcaaaattttgcccaggctcg 25599447  T
Q  137 ataaattttttggctccgccac 158  Q
    ||||||||||| ||||||||||    
T  25599448 ataaattttttagctccgccac 25599469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 39 - 127
Target Start/End: Complemental strand, 32441956 - 32441868
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaatttt 127  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||| |  ||||||||||    
T  32441956 acttttatcgacaaaatgacgagcctcttttatttcgatttatgactatttatatattatgtcgcatgtgaatttgcaatcaaaatttt 32441868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 30621357 - 30621455
Alignment:
Q  39 acttttattgacaaaatgacgagcctctttt-atttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgcacaaact 136  Q
    |||||||| |||||||||||||||||||||| |||| ||||||||| ||||||||||||||||| ||| ||||||| || |||||| ||||| ||||||    
T  30621357 acttttatcgacaaaatgacgagcctctttttattttgatttatgactatttatatattatgtcgcatgtgaatttgcgatcaaaactttgcccaaact 30621455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 11971152 - 11971249
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgcacaaact 136  Q
    ||||| |||| ||||||||| | |||||||||| | ||||||||| ||||||||||||||||||||| ||||||| |||| |||||||||| ||||||    
T  11971152 actttaattgtcaaaatgacaaacctcttttatcttgatttatgactatttatatattatgtcacatgtgaatttgcggttaaaattttgcccaaact 11971249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 132
Target Start/End: Original strand, 25340631 - 25340726
Alignment:
Q  39 acttttattgacaaa--atgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgcaca 132  Q
    |||||||||||||||  |||||||| ||||| |||||||||||| || |||||||||||||||||| || | |||||||||| |||||||||||||    
T  25340631 acttttattgacaaataatgacgagtctcttctatttcgatttaggactatttatatattatgtcatatataaatttacggttaaaattttgcaca 25340726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 31028070 - 31028005
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcaca 104  Q
    |||||| |||||||||| | || |||||||||||||||||||||| ||||||||||||||||||||    
T  31028070 acttttgttgacaaaataaggaacctcttttatttcgatttatgactatttatatattatgtcaca 31028005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 111
Target Start/End: Complemental strand, 12180500 - 12180430
Alignment:
Q  41 ttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaat 111  Q
    |||||| || ||||||| |||||| |||||||||||||||||| ||||||||||||||||| ||| |||||    
T  12180500 ttttatcgataaaatgatgagcctattttatttcgatttatgactatttatatattatgtcgcatgtgaat 12180430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 1296709 - 1296777
Alignment:
Q  47 tgacaaaatgacgagcctcttttatttcgatttatgattatt--tatatattatgtcacatttgaattt 113  Q
    |||||||||||||| || |||||||||  |||||||| ||||  |||||||||||||||||||||||||    
T  1296709 tgacaaaatgacgaaccacttttattttaatttatgactatttatatatattatgtcacatttgaattt 1296777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 24074617 - 24074684
Alignment:
Q  51 aaaatgacgagcctcttttatttcgatttatgattatt--tatatattatgtcacatttgaatttacg 116  Q
    |||||||||| |||||||||||| ||||||| | ||||  ||||||||||||||||| ||||||||||    
T  24074617 aaaatgacgaccctcttttattttgatttattactattattatatattatgtcacatgtgaatttacg 24074684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 34947883 - 34947839
Alignment:
Q  72 ttcgatttatgattatttatatattatgtcacatttgaatttacg 116  Q
    |||||||||||||| |||||||||||| |||||| ||||||||||    
T  34947883 ttcgatttatgattgtttatatattatatcacatgtgaatttacg 34947839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 127
Target Start/End: Original strand, 12648930 - 12648988
Alignment:
Q  69 tatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaatttt 127  Q
    ||||||||| ||||| ||||||||||||||| ||||| | |||||  ||||||||||||    
T  12648930 tatttcgatgtatgactatttatatattatgccacatgtaaatttgtggtcaaaatttt 12648988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 9e-30; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 41 - 159
Target Start/End: Original strand, 15668140 - 15668258
Alignment:
Q  41 ttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgcacaaactataa 140  Q
    ||||||||||||||| ||||||||||||||||| | | ||||| ||||||||||||||||||||| |||||||||||| ||||||| || ||| || |||    
T  15668140 ttttattgacaaaataacgagcctcttttattttgctatatgactatttatatattatgtcacatgtgaatttacggtgaaaatttcgcccaatctctaa 15668239  T
Q  141 attttttggctccgccact 159  Q
    | ||| |||||||||||||    
T  15668240 aatttctggctccgccact 15668258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 127
Target Start/End: Complemental strand, 24988795 - 24988707
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaatttt 127  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||| |||||||  ||||||||||||    
T  24988795 acttttattgacaaaatgacgagtctcttttattttgatttatgattatttataaattatgtcacatgtgaatttgtggtcaaaatttt 24988707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 42269220 - 42269123
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgcacaaact 136  Q
    |||||| || |||||||||| |  |||||||||||| |||||| ||||||||||||||||||||||| | |||||||||| |||||||||||| ||||    
T  42269220 acttttgtttacaaaatgacaaatctcttttatttcaatttataattatttatatattatgtcacatataaatttacggttaaaattttgcaccaact 42269123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 139
Target Start/End: Original strand, 9743461 - 9743561
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgcacaaactat 138  Q
    |||||||||||||||||||||||  | ||| |||||||||||||| ||||||||||  |||| |||| ||||||| ||||||||||||||| || |||||    
T  9743461 acttttattgacaaaatgacgagtttatttgatttcgatttatgactatttatatacaatgtaacatgtgaatttgcggtcaaaattttgcccagactat 9743560  T
Q  139 a 139  Q
    |    
T  9743561 a 9743561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 127
Target Start/End: Original strand, 51262172 - 51262259
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaatttt 127  Q
    |||||||||||||||||||||| | ||| ||||||||||| || ||||||||||||||||||||||| |||||| ||||| ||||||||    
T  51262172 acttttattgacaaaatgacgatcatctcttatttcgatt-ataattatttatatattatgtcacatgtgaattcacggttaaaatttt 51262259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 39 - 129
Target Start/End: Complemental strand, 37381851 - 37381760
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatg-attatttatatattatgtcacatttgaatttacggtcaaaattttgc 129  Q
    |||||| |||||||| |||||| ||||||||||||||||||||| | |||||||||||||| |||||| ||||||| |||| ||||||||||    
T  37381851 acttttgttgacaaagtgacgaacctcttttatttcgatttatgaactatttatatattatatcacatgtgaattttcggttaaaattttgc 37381760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 41 - 128
Target Start/End: Original strand, 43137321 - 43137408
Alignment:
Q  41 ttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttg 128  Q
    |||| |||| |||||||| | |||||||||||||||||||||| |||| |||||||||||||||| ||||||| |||| |||||||||    
T  43137321 ttttgttgaaaaaatgacaaacctcttttatttcgatttatgactattcatatattatgtcacatgtgaatttgcggttaaaattttg 43137408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 39 - 127
Target Start/End: Complemental strand, 3856849 - 3856761
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaatttt 127  Q
    |||||||| ||||||||||||| |||  ||||||| ||||||| | ||||||||||||||||||||| ||||||| |||| ||||||||    
T  3856849 acttttatcgacaaaatgacgaacctactttattttgatttataactatttatatattatgtcacatgtgaatttgcggtgaaaatttt 3856761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 159
Target Start/End: Complemental strand, 1185627 - 1185502
Alignment:
Q  37 tcacttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttg-aatttacggtcaaaattttgcacaaac 135  Q
    |||||||| |||||||||| | || |||||||||||| ||||||||| | ||||||||||||||||||| || |||||||| | ||  |||||| |  ||    
T  1185627 tcacttttgttgacaaaataaggaacctcttttattttgatttatgactgtttatatattatgtcacatgtgaaatttacgataaattttttgcccggac 1185528  T
Q  136 t--ataaattttttggctccgccact 159  Q
    |  ||||||||| |||||||||||||    
T  1185527 ttcataaattttctggctccgccact 1185502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 17073949 - 17073887
Alignment:
Q  64 tcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattt 126  Q
    |||||||||||||||| ||| ||||||||||||||||||||| ||||||| | ||||||||||    
T  17073949 tcttttatttcgatttttgactatttatatattatgtcacatatgaatttgcagtcaaaattt 17073887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 50091460 - 50091522
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtc 101  Q
    |||||||||  ||||||||||| |||||||||||| ||||||||| |||||||||||||||||    
T  50091460 acttttattagcaaaatgacgaacctcttttattttgatttatgactatttatatattatgtc 50091522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 31989222 - 31989290
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatt--tatatattatgtcacat 105  Q
    |||||| |||| ||| |||||| |||||||||||||||||||||||||||  |||||||||||||||||    
T  31989222 acttttgttgaaaaagtgacgaacctcttttatttcgatttatgattatttatatatattatgtcacat 31989290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 40080798 - 40080755
Alignment:
Q  73 tcgatttatgattatttatatattatgtcacatttgaatttacg 116  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  40080798 tcgatttatgattatttatatattatgtcacatgtgaatttacg 40080755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 39772906 - 39772949
Alignment:
Q  73 tcgatttatgattatttatatattatgtcacatttgaatttacg 116  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||    
T  39772906 tcgatttatgattgtttatatattatgtcacatgtgaatttacg 39772949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 51408591 - 51408515
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttat--atattatgtcacatttgaattt 113  Q
    |||||| |||| |||||||||| | | |||||||| ||||||||| |||||||  |||||||||||||| |||||||    
T  51408591 acttttgttgaaaaaatgacgaactttttttattttgatttatgactatttatatatattatgtcacatatgaattt 51408515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 53710591 - 53710659
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatt--tatatattatgtcacat 105  Q
    |||||| |||| |||||||||| | |||||||||||||||||||| ||||  |||||||||| ||||||    
T  53710591 acttttgttgaaaaaatgacgaacttcttttatttcgatttatgactatttgtatatattatatcacat 53710659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 42964833 - 42964793
Alignment:
Q  86 atttatatattatgtcacatttgaatttacggtcaaaattt 126  Q
    |||||||||||||||||||| |||||||||||| |||||||    
T  42964833 atttatatattatgtcacatgtgaatttacggttaaaattt 42964793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 127
Target Start/End: Complemental strand, 24130435 - 24130397
Alignment:
Q  89 tatatattatgtcacatttgaatttacggtcaaaatttt 127  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  24130435 tatatattatgtcacatgtgaatttacggtcaaattttt 24130397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 34083171 - 34083121
Alignment:
Q  66 ttttatttcgatttatgattatttatatattatgtcacatttgaatttacg 116  Q
    |||| ||| ||||||||| | ||||||||||||||||||| ||||||||||    
T  34083171 tttttttttgatttatgactgtttatatattatgtcacatgtgaatttacg 34083121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 113
Target Start/End: Original strand, 5136346 - 5136417
Alignment:
Q  41 ttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaattt 113  Q
    |||| |||||||| ||| || ||||||||||||  |||||||| | ||||||||||| ||||||| |||||||    
T  5136346 ttttgttgacaaactga-gaacctcttttattttaatttatgactgtttatatattacgtcacatgtgaattt 5136417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 127
Target Start/End: Original strand, 1280774 - 1280862
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaatttt 127  Q
    |||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||| ||||||||    
T  1280774 acttttgttgacaaaattacgagcctcttttatttcgatttatgactatttatatattatgtcacatgtgaatttgcggttaaaatttt 1280862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 39 - 129
Target Start/End: Complemental strand, 27168785 - 27168695
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgc 129  Q
    |||||||| || ||||||||||| |||| |||||||||||||||| |||||||||||||||||| || ||||||| |  ||||||||||||    
T  27168785 acttttatggataaaatgacgagtctctattatttcgatttatgactatttatatattatgtcaaatgtgaatttgcaatcaaaattttgc 27168695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 3055675 - 3055764
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttg 128  Q
    |||||||| ||||||||||| || ||||||||||||||||||||| |||||||||||||| |  ||| ||||||| || |||||||||||    
T  3055675 acttttatcgacaaaatgacaagtctcttttatttcgatttatgactatttatatattatatagcatgtgaatttgcgatcaaaattttg 3055764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 22712881 - 22712793
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttg 128  Q
    |||||||| ||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||||| | || || ||||||||||||||    
T  22712881 acttttatcgacaaaatgacgagcctcttt-atttcaatttatgactatttatatatcatgtcacatgtaaacttgcggtcaaaattttg 22712793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 23244552 - 23244490
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtc 101  Q
    |||||||||| ||||||||||||||||||||||||| |||||||  |||||||||||||||||    
T  23244552 acttttattggcaaaatgacgagcctcttttatttcaatttatggctatttatatattatgtc 23244490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 28801926 - 28802000
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaattt 113  Q
    |||||| |||||||||||| || ||||||||||||| |||||||| | ||||||||||||||| ||| |||||||    
T  28801926 acttttgttgacaaaatgaggaacctcttttatttcaatttatgactgtttatatattatgtcgcatgtgaattt 28802000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 39 - 129
Target Start/End: Complemental strand, 15730957 - 15730865
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgat--tatttatatattatgtcacatttgaatttacggtcaaaattttgc 129  Q
    |||||||||| ||||||||||||||| ||| |||||||| ||| |   ||||||||||||||||||||| ||||||| |  ||||||||||||    
T  15730957 acttttattgtcaaaatgacgagcctatttgatttcgatgtataacactatttatatattatgtcacatgtgaatttgcattcaaaattttgc 15730865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 159
Target Start/End: Original strand, 8785977 - 8786094
Alignment:
Q  41 ttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgcacaaact--at 138  Q
    |||||| ||||||||||| | ||||||||||||  |||||||| |   ||||||||||||| ||| ||||||| |||| |||||||||| ||||||  ||    
T  8785977 ttttatcgacaaaatgacaaacctcttttattttaatttatgaat---tatatattatgtcccatgtgaatttgcggttaaaattttgcccaaactcaat 8786073  T
Q  139 aaattttttggctccgccact 159  Q
    ||| || ||| ||||||||||    
T  8786074 aaaattgttgactccgccact 8786094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 204055 - 204122
Alignment:
Q  51 aaaatgacgagcctcttttatttcgatttatgattatt--tatatattatgtcacatttgaatttacg 116  Q
    ||||||||||  ||||||||||| ||||||||| ||||  ||||||||||||||||| ||||||||||    
T  204055 aaaatgacgattctcttttattttgatttatgactattattatatattatgtcacatgtgaatttacg 204122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 116
Target Start/End: Original strand, 13819086 - 13819133
Alignment:
Q  69 tatttcgatttatgattatttatatattatgtcacatttgaatttacg 116  Q
    ||||||||||||||| | ||||||||||||||||||| ||||||||||    
T  13819086 tatttcgatttatgactgtttatatattatgtcacatgtgaatttacg 13819133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 116
Target Start/End: Original strand, 16156017 - 16156064
Alignment:
Q  69 tatttcgatttatgattatttatatattatgtcacatttgaatttacg 116  Q
    ||||||||||| ||||| ||||||||||||||||||| ||||||||||    
T  16156017 tatttcgatttgtgattgtttatatattatgtcacatgtgaatttacg 16156064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 1775423 - 1775377
Alignment:
Q  70 atttcgatttatgattatttatatattatgtcacatttgaatttacg 116  Q
    |||||||||||||| | ||||||||||||||||||| ||||||||||    
T  1775423 atttcgatttatgactgtttatatattatgtcacatgtgaatttacg 1775377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 192847 - 192896
Alignment:
Q  64 tcttttatttcgatttatgattatttatatattatgtcacatttgaattt 113  Q
    |||||||||| ||||||||||| |||||||||||||| |||| |||||||    
T  192847 tcttttattttgatttatgattgtttatatattatgttacatgtgaattt 192896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 128
Target Start/End: Complemental strand, 12098091 - 12098052
Alignment:
Q  89 tatatattatgtcacatttgaatttacggtcaaaattttg 128  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  12098091 tatatattatgtcacatgtgaatttacggttaaaattttg 12098052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 26282370 - 26282327
Alignment:
Q  73 tcgatttatgattatttatatattatgtcacatttgaatttacg 116  Q
    ||||||||||| | ||||||||||||||||||| ||||||||||    
T  26282370 tcgatttatgactgtttatatattatgtcacatgtgaatttacg 26282327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 36292662 - 36292619
Alignment:
Q  73 tcgatttatgattatttatatattatgtcacatttgaatttacg 116  Q
    ||||||||||| | ||||||||||||||||||| ||||||||||    
T  36292662 tcgatttatgactgtttatatattatgtcacatgtgaatttacg 36292619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 39656576 - 39656531
Alignment:
Q  69 tatttcgatttatgattatttatatattatgtcacatttgaattta 114  Q
    ||||||||||||||| | |||||||||||| |||||| ||||||||    
T  39656576 tatttcgatttatgactgtttatatattatatcacatgtgaattta 39656531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 127
Target Start/End: Original strand, 12539766 - 12539854
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaatttt 127  Q
    |||||||| |||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||| | |||||||||||||||||||    
T  12539766 acttttatcgacaaaatgatgagcctcttttatttcgattcatgactatttatatattatgtcacatataaatttacggtcaaaatttt 12539854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 39 - 127
Target Start/End: Original strand, 31392989 - 31393076
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaatttt 127  Q
    |||||||| |||||| |||||| ||||||||| |||||||||||| ||||||||||||||||||||| | |||||||||||||||||||    
T  31392989 acttttatcgacaaa-tgacgaacctcttttaattcgatttatgactatttatatattatgtcacatgtaaatttacggtcaaaatttt 31393076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 129
Target Start/End: Complemental strand, 33453170 - 33453080
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgc 129  Q
    |||||| ||||||||||||||| ||| ||||| || |||||||||||||||||||||||| |||||| ||||||||| || ||||||||||    
T  33453170 acttttgttgacaaaatgacgaacctattttactttgatttatgattatttatatattatctcacatgtgaatttacagttaaaattttgc 33453080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 19951814 - 19951725
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttg 128  Q
    |||||| |||||||||||| ||| ||| ||||||||||||||||| |||||||||||||||| |||| ||||||| |||| |||||||||    
T  19951814 acttttgttgacaaaatgatgagtctcgtttatttcgatttatgactatttatatattatgttacatgtgaatttgcggttaaaattttg 19951725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 41 - 129
Target Start/End: Complemental strand, 45261825 - 45261737
Alignment:
Q  41 ttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgc 129  Q
    ||||||||||||||||| ||| ||| ||||||| ||||||||| |||||||||||||| |||||| ||||||| |||| ||||||||||    
T  45261825 ttttattgacaaaatgatgaggctcatttatttagatttatgactatttatatattatatcacatgtgaatttgcggttaaaattttgc 45261737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 26238666 - 26238740
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaattt 113  Q
    |||||| ||||| |||||| || |||||||||||||||||||||| | ||||||||||||||| ||| |||||||    
T  26238666 acttttcttgacgaaatgaggaacctcttttatttcgatttatgactgtttatatattatgtcgcatgtgaattt 26238740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 4554391 - 4554341
Alignment:
Q  66 ttttatttcgatttatgattatttatatattatgtcacatttgaatttacg 116  Q
    |||||||||||||||||| ||||||||||||||||||||| | ||||||||    
T  4554391 ttttatttcgatttatgactatttatatattatgtcacatctaaatttacg 4554341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 113
Target Start/End: Complemental strand, 7071638 - 7071571
Alignment:
Q  46 ttgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaattt 113  Q
    |||||||||||| || |||||||||||| || |||||| | ||||| ||||||||||||| |||||||    
T  7071638 ttgacaaaatgaggaacctcttttattttgacttatgactgtttatgtattatgtcacatgtgaattt 7071571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 113
Target Start/End: Complemental strand, 18425928 - 18425862
Alignment:
Q  49 acaaaatgacgagcctcttttatttcgatttatgattatttat--atattatgtcacatttgaattt 113  Q
    ||||||||| || |||||||||||||||||| ||| |||||||  |||||||||||||| |||||||    
T  18425928 acaaaatgatgaacctcttttatttcgatttctgactatttatatatattatgtcacatgtgaattt 18425862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 32126304 - 32126229
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaattta 114  Q
    |||||| ||||||||||||  |  ||||||||||||||||||||| | ||||||| |||| |||||| ||||||||    
T  32126304 acttttgttgacaaaatgataaatctcttttatttcgatttatgactgtttatattttatatcacatgtgaattta 32126229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 159
Target Start/End: Complemental strand, 17444076 - 17443988
Alignment:
Q  73 tcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgcacaaact--ataaattttttggctccgccact 159  Q
    ||||||||||| | ||||||||||||||||||| |||||||||| | ||  |||||| || |||  ||||||||  |||||||||||||    
T  17444076 tcgatttatgactgtttatatattatgtcacatgtgaatttacgattaattttttgcccagactccataaatttgctggctccgccact 17443988  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 1955022 - 1955078
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatat 95  Q
    |||||| |||| |||||||||| |||||||||| | ||||| |||||||||||||||    
T  1955022 acttttgttgaaaaaatgacgaacctcttttatcttgatttgtgattatttatatat 1955078  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 26656323 - 26656271
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttat 91  Q
    |||||| |||||||||||||   |||||||||||||||||||||| |||||||    
T  26656323 acttttgttgacaaaatgacatacctcttttatttcgatttatgactatttat 26656271  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 6402857 - 6402814
Alignment:
Q  73 tcgatttatgattatttatatattatgtcacatttgaatttacg 116  Q
    ||||||||||| | ||||||||||||||||||| ||||||||||    
T  6402857 tcgatttatgactgtttatatattatgtcacatgtgaatttacg 6402814  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 128
Target Start/End: Complemental strand, 27925681 - 27925638
Alignment:
Q  85 tatttatatattatgtcacatttgaatttacggtcaaaattttg 128  Q
    ||||||||||| ||||||||| ||||||| ||||||||||||||    
T  27925681 tatttatatatcatgtcacatgtgaatttgcggtcaaaattttg 27925638  T

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Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 30547148 - 30547215
Alignment:
Q  69 tatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgcacaaact 136  Q
    ||||| ||| ||||| ||||||| |||||| |||||| ||||||| ||||||||||||| | ||||||    
T  30547148 tattttgatctatgactatttatgtattatatcacatgtgaatttgcggtcaaaattttacccaaact 30547215  T

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Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 69 - 116
Target Start/End: Original strand, 42443095 - 42443142
Alignment:
Q  69 tatttcgatttatgattatttatatattatgtcacatttgaatttacg 116  Q
    ||||||||||||||| | |||||||||||| |||||| ||||||||||    
T  42443095 tatttcgatttatgactgtttatatattatatcacatgtgaatttacg 42443142  T

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Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 31580777 - 31580735
Alignment:
Q  72 ttcgatttatgattatttatatattatgtcacatttgaattta 114  Q
    |||||||||||||| ||||||||||||||||||| ||| ||||    
T  31580777 ttcgatttatgattgtttatatattatgtcacatatgagttta 31580735  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 40608057 - 40607999
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatatta 97  Q
    ||||||||||| ||||| ||||  || ||||||||  ||||||||||||||||||||||    
T  40608057 acttttattgataaaataacgaatcttttttattttaatttatgattatttatatatta 40607999  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 17035802 - 17035758
Alignment:
Q  72 ttcgatttatgattatttatatattatgtcacatttgaatttacg 116  Q
    |||||||||||| |||| ||||||||||||| || ||||||||||    
T  17035802 ttcgatttatgactattgatatattatgtcatatgtgaatttacg 17035758  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 17090313 - 17090269
Alignment:
Q  72 ttcgatttatgattatttatatattatgtcacatttgaatttacg 116  Q
    |||||||||||| |||| ||||||||||||| || ||||||||||    
T  17090313 ttcgatttatgactattgatatattatgtcatatgtgaatttacg 17090269  T

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Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 41250674 - 41250634
Alignment:
Q  76 atttatgattatttatatattatgtcacatttgaatttacg 116  Q
    |||||||| | ||||||||||||||||||| ||||||||||    
T  41250674 atttatgactgtttatatattatgtcacatgtgaatttacg 41250634  T

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Target: scaffold0726 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 39 - 127
Target Start/End: Original strand, 1076 - 1164
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaatttt 127  Q
    ||||||||||||||||||||||| ||||||||||| ||||| |||||||||||| |||||||||||| |||||||  ||||||||||||    
T  1076 acttttattgacaaaatgacgagtctcttttattttgatttgtgattatttataaattatgtcacatgtgaatttgtggtcaaaatttt 1164  T

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Target: scaffold0198 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 129
Target Start/End: Original strand, 1589 - 1679
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgc 129  Q
    |||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||   ||  |||||| |||||||||||||||    
T  1589 acttttattgacaaaatgacgagcgtattttatttcgatttatgactatttatatattatgttgtatgcgaatttgcggtcaaaattttgc 1679  T

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Target: scaffold0002 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 46 - 113
Target Start/End: Complemental strand, 435324 - 435257
Alignment:
Q  46 ttgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtcacatttgaattt 113  Q
    |||||||||| |||||||| ||| |||||||||||| | ||||||||||||||||||||| |||||||    
T  435324 ttgacaaaataacgagcctatttaatttcgatttataactatttatatattatgtcacatgtgaattt 435257  T

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Target: scaffold0015 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 214143 - 214067
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatttat--atattatgtcacatttgaattt 113  Q
    |||||| |||| ||||||| || |||||||||||||||||||||| |||||||  |||||||||||||| |||||||    
T  214143 acttttgttgaaaaaatgaagaacctcttttatttcgatttatgactatttatatatattatgtcacatatgaattt 214067  T

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Target: scaffold0178 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 129
Target Start/End: Original strand, 17931 - 18023
Alignment:
Q  39 acttttattgacaaaatgacgagcctct--tttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgc 129  Q
    |||||||| ||||||||||| ||||| |  ||||||| ||||||||| |||||||||||||   ||||| ||||||| || ||||||||||||    
T  17931 acttttatcgacaaaatgacaagcctatattttattttgatttatgactatttatatattacaccacatgtgaatttgcgatcaaaattttgc 18023  T

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Target: scaffold0154 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 102
Target Start/End: Original strand, 32268 - 32329
Alignment:
Q  41 ttttattgacaaaatgacgagcctcttttatttcgatttatgattatttatatattatgtca 102  Q
    |||| ||||||||||||  | ||| |||||||||||||||||||| ||||||||||||||||    
T  32268 ttttgttgacaaaatgataaaccttttttatttcgatttatgattgtttatatattatgtca 32329  T

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Target: scaffold0170 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 9269 - 9337
Alignment:
Q  39 acttttattgacaaaatgacgagcctcttttatttcgatttatgattatt--tatatattatgtcacat 105  Q
    |||||| |||| |||||||||| ||||||||||||  |||||||| ||||  |||||||||||||||||    
T  9269 acttttgttgaaaaaatgacgaacctcttttattttaatttatgactatttatatatattatgtcacat 9337  T

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Target: scaffold0019 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 113
Target Start/End: Complemental strand, 134824 - 134760
Alignment:
Q  51 aaaatgacgagcctcttttatttcgatttatgattatttat--atattatgtcacatttgaattt 113  Q
    |||||||||| |||||||||||| ||| ||||| |||||||  |||||||||||||| |||||||    
T  134824 aaaatgacgatcctcttttattttgatatatgactatttatatatattatgtcacatgtgaattt 134760  T

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Target: scaffold0069 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 18684 - 18727
Alignment:
Q  73 tcgatttatgattatttatatattatgtcacatttgaatttacg 116  Q
    ||||||||||| | ||||||||||||||||||| ||||||||||    
T  18684 tcgatttatgactgtttatatattatgtcacatgtgaatttacg 18727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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