View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8820_high_15 (Length: 220)
Name: NF8820_high_15
Description: NF8820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8820_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 16644397 - 16644600
Alignment:
| Q |
1 |
tgaatagattttgttgtccttcattgatatcgacttaccaaaaaacaacctttggttcattacatgagttacccaacagaaccaaaccatgaccagaaaa |
100 |
Q |
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| T |
16644397 |
tgaatagattttgttgtccttcattgatatcgacttaccaaaaaacaacctttggttcattacatgagttacccaacagaaccaaaccatgaccaaaaaa |
16644496 |
T |
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| Q |
101 |
agcctcaaaatctgtttgttggtgtcaataattttcttgatcattgttgccaccgtaattttatccttagcattcacaatctctaaacccaaggacccag |
200 |
Q |
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| T |
16644497 |
agcctcaaaatctgtttgttggtgtcaataattttcttgatcattgttgccaccgtaattttatccttagcattcacaatctctaaacccaaggacccag |
16644596 |
T |
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| Q |
201 |
atgt |
204 |
Q |
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|||| |
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| T |
16644597 |
atgt |
16644600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 16619433 - 16619632
Alignment:
| Q |
1 |
tgaatagattttgttgtccttcattgatatcgacttaccaaaaaacaacctttggttcattacatgagttacccaacagaaccaa--accatgaccagaa |
98 |
Q |
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||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||| ||||||| | |||||||| |||||||||| || |
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| T |
16619433 |
tgaatagattttgttgtccttcattga------ctttccaaaaagcaacctttggttcattacataggttaccccaaagaaccaagtaccatgaccaaaa |
16619526 |
T |
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| Q |
99 |
aaagcctcaaaatctgtttgttggtgtcaataattttcttgatcattgttgccaccgtaattttatccttagcattcacaatctctaaacccaaggaccc |
198 |
Q |
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| T |
16619527 |
gagggctcaaaatatgtttgttagtgtcaataattttcttgatcattgttgccaccgtgattttatccttagttttcacaatctttaaacccaagaaccc |
16619626 |
T |
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