View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8820_high_2 (Length: 880)
Name: NF8820_high_2
Description: NF8820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8820_high_2 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-151; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 164 - 490
Target Start/End: Complemental strand, 15183590 - 15183263
Alignment:
| Q |
164 |
ggaactactctatagaaaagagagttcaagccgcgttcatcttgaggaggtgcaagagatcctctggaggagagatatggtagagtagctcagaattcga |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||| ||| |
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| T |
15183590 |
ggaactactctatagaaaagagagttcaagccgcgttcatcttgaggaggtgcaagagatcctctggagaagagatatggtattgtagttcagaatccga |
15183491 |
T |
|
| Q |
264 |
atctgttt-aagcttggccataaaatccgcacattgacttccctaaaagtgtggcaaactgttacattaccttacctaatcagatccttcacatcttaga |
362 |
Q |
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||||| || ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15183490 |
atctgcttcaagcttggccataaaatccacacattgacttccctaagagtgtggcaaactgttacattaccttacctaatcagatccttcacatcttaga |
15183391 |
T |
|
| Q |
363 |
tcaagacaacataaatatggtatctcattgacgatattttgaaaaggtttaaacaatgcaaggagtcggtatagcaagcaagcttactggtgttcaagct |
462 |
Q |
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||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
15183390 |
tcaagacaacataaacatgatatctcattgacgatattttgaaaaggtttaaacaatgcaaggggtcggtatagcaagcaagcttaatggtgttcaagct |
15183291 |
T |
|
| Q |
463 |
tttcgccaaaaggaacccctggtaaata |
490 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
15183290 |
tttcgccaaaaggaacccctggtaaata |
15183263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 8e-85
Query Start/End: Original strand, 489 - 664
Target Start/End: Complemental strand, 15182988 - 15182813
Alignment:
| Q |
489 |
taacaatcttaattaggagcatacaaaaagttataagtaaaaactatttagaatgcatacttaaaattacagcagtgtatcatgcttaatcaattcaagt |
588 |
Q |
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| T |
15182988 |
taacaatcttaattaggagcatacaaaaaattataagtaaaaaatatttagaatgcataattaaaattacagcagtgtatcatgcttaatcaattcaagt |
15182889 |
T |
|
| Q |
589 |
aaaagtctaaatgcatggataaaataaataaaaagaattttctaaggttataaaagaaagtgtatggtaaatgtgt |
664 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15182888 |
aaaagtctaaatgcatggataaaataaataaaaagaattttctgaggttataaaagaaagtgtatggtaaatgtgt |
15182813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 727 - 874
Target Start/End: Complemental strand, 15182750 - 15182602
Alignment:
| Q |
727 |
gatcaattttaggcatttacgaataactctcacattcatcaaattaaatcacactatcatatgtcatataagcacaactcagttgataactgcaaagata |
826 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
15182750 |
gatcaattttaggcatttacgaataactctcacattcatcaaattaaatcacactatcatatgtcatgtaagcacaactcagttgatagctgcaaagata |
15182651 |
T |
|
| Q |
827 |
atattattat-ggactgacgtttgaaccctagactctctgcttctccac |
874 |
Q |
| |
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|||||||||| ||| ||| |||||||||||||||||||| ||||||||| |
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| T |
15182650 |
atattattatgggattgatgtttgaaccctagactctctacttctccac |
15182602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 15183732 - 15183631
Alignment:
| Q |
18 |
ggtataacatcctctaacaaataatcaagtattcaatcatagcttaactagaaatactccatcacaatcttaattttttttggttacaaggcaaatgaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
15183732 |
ggtataacatcctctaacaaataatcaagtattcaatcatagcttaactagaaatactccatcacaatcttatttttttttggttacaaggcaaatgaaa |
15183633 |
T |
|
| Q |
118 |
gg |
119 |
Q |
| |
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|| |
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|
| T |
15183632 |
gg |
15183631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 310 - 446
Target Start/End: Complemental strand, 10598763 - 10598627
Alignment:
| Q |
310 |
agtgtggcaaactgttacattaccttacctaatcagatccttcacatcttagatcaagacaacataaatatggtatctcattgacgatattttgaaaagg |
409 |
Q |
| |
|
|||||||||||| ||||||||||||| ||| || |||||||||||||||| |||||||||||||||| |||||||| || | ||| ||||| || |
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| T |
10598763 |
agtgtggcaaacagttacattaccttgcctgattagatccttcacatcttgaatcaagacaacataaacatggtatcatatagtcgagcctttgatgggg |
10598664 |
T |
|
| Q |
410 |
tttaaacaatgcaaggagtcggtatagcaagcaagct |
446 |
Q |
| |
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|||| ||||||||||||||||||||| ||| |||||| |
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| T |
10598663 |
tttatacaatgcaaggagtcggtatatcaaacaagct |
10598627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 7e-39; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 164 - 490
Target Start/End: Original strand, 24531641 - 24531971
Alignment:
| Q |
164 |
ggaactactctatagaaaagagagttcaagccgcgttcatcttgaggaggtgcaagagatcctctggaggagagatatggtagagtagctcagaattcga |
263 |
Q |
| |
|
||||||||||| ||||| ||| ||||| | | ||| |||| ||||||||| |||||||| ||||||||||||| ||||||||| ||||||| || ||| |
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| T |
24531641 |
ggaactactctctagaatagacagttccaactacgtacatcctgaggaggttcaagagattatctggaggagagacatggtagagcagctcagtatccga |
24531740 |
T |
|
| Q |
264 |
atctgttt-aagcttggccataaaatccgcacattgacttccct----aaaagtgtggcaaactgttacattaccttacctaatcagatccttcacatct |
358 |
Q |
| |
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| ||| || ||||||| ||| ||||| || |||||| |||| || |||||| ||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
24531741 |
acctgcttcaagcttgaccaaaaaatatgcgcattgatcaccctttttaagagtgtgacaaacagttacattaccttgcctaatcagatccttcacatct |
24531840 |
T |
|
| Q |
359 |
tagatcaagacaacataaatatggtatctcattgacgatattttgaaaaggtttaaacaatgcaaggagtcggtatagcaagcaagcttactggtgttca |
458 |
Q |
| |
|
| |||||||||| |||||| |||||||| |||||||| | ||||| || |||| | |||| | |||||||||||||||| ||| || | | || | |
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| T |
24531841 |
tggatcaagacatcataaacatggtatcccattgacggtcctttgaggagttttataaaatgtagggagtcggtatagcaaacaaactcaacaatatt-a |
24531939 |
T |
|
| Q |
459 |
agcttttcgccaaaaggaacccctggtaaata |
490 |
Q |
| |
|
||||||||||||||| |||||| ||||||||| |
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|
| T |
24531940 |
agcttttcgccaaaatgaacccatggtaaata |
24531971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 305 - 465
Target Start/End: Complemental strand, 18903417 - 18903257
Alignment:
| Q |
305 |
ctaaaagtgtggcaaactgttacattaccttacctaatcagatccttcacatcttagatcaagacaacataaatatggtatctcattgacgatattttga |
404 |
Q |
| |
|
|||| ||||||| ||| ||||||||||||| ||||||||||||||||||||| | ||||||||||||||| | |||||||| ||| |||| |||||| |
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|
| T |
18903417 |
ctaagagtgtggtaaaaagttacattaccttgcctaatcagatccttcacatcctggatcaagacaacatacacatggtatcacatagacggacttttga |
18903318 |
T |
|
| Q |
405 |
aaaggtttaaacaatgcaaggagtcggtatagcaagcaagcttactggtgttcaagctttt |
465 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||| | | || ||||||||||| |
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| T |
18903317 |
ggaggtttatacaatgcaaggagtcggtatagcaaacaagctcaattgtattcaagctttt |
18903257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 182 - 359
Target Start/End: Complemental strand, 14251769 - 14251587
Alignment:
| Q |
182 |
agagagttcaagccgcgttcatcttgaggaggtgcaagagatcctctggaggagagatatggtagagtagctcagaattcgaatctgtt-taagcttggc |
280 |
Q |
| |
|
||||||||| | | |||| |||| ||||||| | ||||| |||| ||||||||||||||||||||| |||| || || |||| ||| | |||||||||| |
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|
| T |
14251769 |
agagagttccaactgcgtccatcctgaggagatacaagaaatccgttggaggagagatatggtagagcagcttagtatccgaacctgctctaagcttggc |
14251670 |
T |
|
| Q |
281 |
cataaaatccgcacattgacttcccta----aaagtgtggcaaactgttacattaccttacctaatcagatccttcacatctt |
359 |
Q |
| |
|
|||||| ||| | || ||| | | ||| | |||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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|
| T |
14251669 |
cataaattccactcactgattactctatctaagagtgtggcaaactgttacattaccttgcctaatcagatccttcatatctt |
14251587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 164 - 356
Target Start/End: Complemental strand, 220128 - 219931
Alignment:
| Q |
164 |
ggaactactctatagaaaagagagttcaagccgcgttcatcttgaggaggtgcaagagatcctctggaggagagatatggtagagtagctcagaattcga |
263 |
Q |
| |
|
||||| ||||| ||||| ||||||||| | | |||| |||| ||||||||| |||| ||| |||||| | ||| ||||||||| |||||||||| | | |
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|
| T |
220128 |
ggaaccactctctagaatagagagttccaactgcgtccatcctgaggaggtcgaagaaatcacctggagaacagacatggtagagcagctcagaatccta |
220029 |
T |
|
| Q |
264 |
atctgtt-taagcttggccataaaatccgcacattgacttccct----aaaagtgtggcaaactgttacattaccttacctaatcagatccttcacat |
356 |
Q |
| |
|
| || | ||||||||||||||||||| ||| ||||||| || | || ||||||| |||| ||||||||||||| |||||||| ||||||||||| |
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|
| T |
220028 |
acttgctctaagcttggccataaaatctgcatattgactgccgtttttaagagtgtggtaaacagttacattaccttgcctaatcaaatccttcacat |
219931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 275 - 444
Target Start/End: Complemental strand, 32540873 - 32540705
Alignment:
| Q |
275 |
cttggccataaaatccgcacattgacttccctaaaagtgtggcaaactgttacattaccttacctaatcagatccttcacatcttagatcaagacaacat |
374 |
Q |
| |
|
|||| |||||||||||||||||||| | |||| | |||||||||| ||||||| ||| ||| |||| |||||| ||||||| ||| || ||||||| |
|
|
| T |
32540873 |
cttgaccataaaatccgcacattgattaccctctca-tgtggcaaacaactacattatcttgcctgatcaaatccttaacatcttggataaaaacaacat |
32540775 |
T |
|
| Q |
375 |
aaatatggtatctcattgacgatattttgaaaaggtttaaacaatgcaaggagtcggtatagcaagcaag |
444 |
Q |
| |
|
||| |||||||||||| | || ||||| ||||| | |||||||| ||||||||||||||| |||| |
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|
| T |
32540774 |
aaacatggtatctcatagtcgggcctttgaggaggttgacgcaatgcaacgagtcggtatagcaaacaag |
32540705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 326 - 392
Target Start/End: Original strand, 24368935 - 24369001
Alignment:
| Q |
326 |
acattaccttacctaatcagatccttcacatcttagatcaagacaacataaatatggtatctcattg |
392 |
Q |
| |
|
||||||| ||||| ||| | |||||| ||||||| ||||||| | ||||||||||||||||||||| |
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|
| T |
24368935 |
acattactttacccaattaaatccttaacatcttgaatcaagaaagcataaatatggtatctcattg |
24369001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 292
Target Start/End: Original strand, 43398900 - 43399029
Alignment:
| Q |
164 |
ggaactactctatagaaaagagagttcaagccgcgttcatcttgaggaggtgcaagagatcctctggaggagagatatggtagagtagctcagaattcga |
263 |
Q |
| |
|
||||||||||| ||||| ||||||||| | |||||| ||| | |||| || ||||||||| || ||||||| ||||||||||| | |||| |||||| |
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|
| T |
43398900 |
ggaactactctctagaatagagagttccaaccgcgtccattctaaggaagttcaagagatcaactagaggagaaatatggtagagcaactcaacattcga |
43398999 |
T |
|
| Q |
264 |
atctg-tttaagcttggccataaaatccgc |
292 |
Q |
| |
|
| || |||||| |||| ||||||||||| |
|
|
| T |
43399000 |
acttgctttaagtttgggtataaaatccgc |
43399029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 784 - 829
Target Start/End: Original strand, 39901108 - 39901153
Alignment:
| Q |
784 |
catatgtcatataagcacaactcagttgataactgcaaagataata |
829 |
Q |
| |
|
|||||||||| ||||||||||||||||| || |||||| ||||||| |
|
|
| T |
39901108 |
catatgtcatgtaagcacaactcagttggtagctgcaacgataata |
39901153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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