View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8820_high_3 (Length: 506)
Name: NF8820_high_3
Description: NF8820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8820_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 20 - 498
Target Start/End: Complemental strand, 1957173 - 1956695
Alignment:
| Q |
20 |
atttatacggttctaaatttctatatctccttgaagatggttaataattgtcctgaaggtactttagtaagtaccgtctgaaatccaactcactgactgc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1957173 |
atttatacggttctaaatttctatatctccttgaagatggttaataattgtcctgaaggtactttagtaagtactgtctgaaatccaactcactgactgc |
1957074 |
T |
|
| Q |
120 |
ttaccaaaatggagtttcatgccatatgtatcactgtacttgtatcatacattgtttgaagctgatcaaaacagggcagtttcatgaaattagaagtcat |
219 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1957073 |
ttactaaaatggagtttcatgccatatgtatcactgtacttgtatcatacattgtttgaagctgatcaaaacagggcagtttcatgaaattagaagtcat |
1956974 |
T |
|
| Q |
220 |
tcaagattatgagaggttgtgttatgatcgtgctgtattcatgctaacttgagcttagcaaaaagataagacgagnnnnnnngccaacatgtattcttgt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1956973 |
tcaagattatgagaggttgtgttatgatcgtgctatattcatgctaacttgagcttagcaaaaagataagacgagtttttttgccaacatgtattcttgt |
1956874 |
T |
|
| Q |
320 |
ttcggaaatttggatgatgcaaaatttgttagagatcttatgagtgataaacagttctataaggatctctcgctttactatccattctgtaaaacaaaca |
419 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
1956873 |
ttcggaaatttggatgatgcacaatttgttagagatcttacgagtgataaacagttctataaggatccctcgcttcactatccattctgtaaaacaaaca |
1956774 |
T |
|
| Q |
420 |
ataatgatgtattgcttggctataaactcaattatacaaactatacagtgtgagtgtgagctctcaaatcgtctctgct |
498 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1956773 |
ataatgatgtattgcttggctataaactcaactatacaagctatacagtgtgagtgtgagctctcaaaccgtctctgct |
1956695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 386
Target Start/End: Complemental strand, 1957412 - 1957328
Alignment:
| Q |
302 |
gccaacatgtattcttgtttcggaaatttggatgatgcaaaatttgttagagatcttatgagtgataaacagttctataaggatc |
386 |
Q |
| |
|
|||||||||||||||| | | |||| | |||||||||| || ||||||||||||||||||||||||| ||| | ||||||||| |
|
|
| T |
1957412 |
gccaacatgtattcttctatgggaagatgggatgatgcacaagttgttagagatcttatgagtgataaccagatacataaggatc |
1957328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 1956601 - 1956569
Alignment:
| Q |
41 |
tatatctccttgaagatggttaataattgtcct |
73 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
|
|
| T |
1956601 |
tatatctccttgaagatggttaataattctcct |
1956569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University