View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8820_low_1 (Length: 984)
Name: NF8820_low_1
Description: NF8820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8820_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 870; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 870; E-Value: 0
Query Start/End: Original strand, 18 - 979
Target Start/End: Complemental strand, 2912550 - 2911587
Alignment:
| Q |
18 |
aaacatgcatgcatggatttcttatatcaatttggaccccagcagctcaagtacatgacagtcctaagagactcttcagcacgttttaccttgtcactgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2912550 |
aaacatgcatgcatggatttcttatatcaatttggaccccagcagctcaagtacatgacagtcctaagagactcttcagcacgttttaccttgtcactgt |
2912451 |
T |
|
| Q |
118 |
tgctacctttgaaagcagaagatgaattttcaaaagcagtattatttgagaaaaccctagccttgacttgctttgaagaagtagaatcccttagagactt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2912450 |
tgctacctttgaaagcagaagatgaattttcaaaagcagtattatttgagaaaaccctagccttaacttgctttgaagaagtagaatcccttagagactt |
2912351 |
T |
|
| Q |
218 |
gattgttgaatcacactttgagctttgatctttcatgccctgaaacgttctcattgcagtttggtacaacactctacctatgtacctcaaactcatgccc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2912350 |
gattgttgaatcacactttgagctttgatctttcatgccctgaaacgttctcattgcagtttggtacaacactctacctatgtacctcaaactcatgccc |
2912251 |
T |
|
| Q |
318 |
aaaattaatcgatcacactttttatactaataaaaatgaaatgaaaagtgaagaagaatctttttgcttagatgannnnnnngcagaataataggtgctt |
417 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2912250 |
aaaattaattgatcacactttttatactaataaaaatgaaatgaaaagtgaagaagaatctttttgcttagatgatttttttgcagaataataggtgctt |
2912151 |
T |
|
| Q |
418 |
gagagataaaatactaagaagtgggattgaaatgaatgaagattgtgcagtgtagtgtatactaatagtaacacaaaatgaaataatggctttatgttac |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2912150 |
gagagataaaatactaagaagtgggattgaaatgaatgaagattgtgcagtgtagtgtatactaatagtaacacaaaatgaaataatggctttatcttac |
2912051 |
T |
|
| Q |
518 |
ttataaaacatggtgctacctgttgaaagaggtggaaacaaccggctaaggatgtggtcttatttggcggagtttccaaacaagaaaataacaatgggca |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2912050 |
ttataaaacatggtgctacctgttgaaagaggtggaaacaaccggctaaggatgtggtcttatttggcggagtttccaaagaagaaaataacaatgggca |
2911951 |
T |
|
| Q |
618 |
taactcaactctgtgggctgagataggacacgtgtcagttacaacatcatggactgaaataagtaacaatgccacgttggccatttgcaaagtttacgtg |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2911950 |
taactcaactctgtgggctgagataggacacgtgtcagttacaacatcatggactgaaataagtaacaatgccacgttggccatttgcaaagtttacgtg |
2911851 |
T |
|
| Q |
718 |
tataatgatgtat----ttagctttggttttggttgggattggaattaaatcaaagagtttgtatatgactgactatatttggaggctactggatttaat |
813 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2911850 |
tataatgatgtatttaattagctttggttttggttgggattggaattaaatcaaagagtttgtata----tgactatatttggaggctactggatttaat |
2911755 |
T |
|
| Q |
814 |
tgatatatgatcacccacgtagatgtatatgtataccactttgtactctattatccattgagtacgtatacagcttattgtttttataatatttgtgacg |
913 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2911754 |
tgatatatgatgacccacgtagatgtatatgcataccactttgtactctattatccattgagtacgtatacagcttattgtttttataatatttgtgacg |
2911655 |
T |
|
| Q |
914 |
tggcagattatggatataaaaaattttggtaac--gatgagcaaatagtcactttggtctctgcttct |
979 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
2911654 |
tggcagattatggatataaaaaaatttggtaacatgatgagcaaatagtcactttggtctctggttct |
2911587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 38025194 - 38025146
Alignment:
| Q |
43 |
atcaatttggaccccagcagctcaagtacatgacagtcctaagagactc |
91 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38025194 |
atcaattaggaccccagcagctcaagtacatgacagtccttagagactc |
38025146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 38031934 - 38031886
Alignment:
| Q |
43 |
atcaatttggaccccagcagctcaagtacatgacagtcctaagagactc |
91 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
38031934 |
atcaattaggaccccagcagctcaagtacatgacagtcctcaaagactc |
38031886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 38003683 - 38003635
Alignment:
| Q |
43 |
atcaatttggaccccagcagctcaagtacatgacagtcctaagagactc |
91 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||| | |||||| |
|
|
| T |
38003683 |
atcaattgggaccccaacagctcaagtacatgacagtcctcaaagactc |
38003635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University